Wall clock time and date at job start Tue Mar 31 2020 23:17:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46902 * 111.00289 * 2 1 4 4 C 1.53003 * 109.46843 * 66.04935 * 3 2 1 5 5 C 1.52999 * 109.47019 * 179.97438 * 4 3 2 6 6 N 1.46502 * 109.46684 * 179.97438 * 5 4 3 7 7 C 1.46499 * 120.00156 * 269.99835 * 6 5 4 8 8 C 1.34779 * 119.99686 * 90.00595 * 6 5 4 9 9 O 1.21536 * 119.99892 * 3.73164 * 8 6 5 10 10 C 1.48007 * 119.99719 * 183.73218 * 8 6 5 11 11 N 1.34182 * 126.70040 * 352.56097 * 10 8 6 12 12 N 1.28981 * 107.25171 * 180.02562 * 11 10 8 13 13 N 1.28722 * 108.98893 * 359.97438 * 12 11 10 14 14 C 1.46499 * 125.31935 * 180.02562 * 13 12 11 15 15 N 1.28870 * 109.35605 * 0.02562 * 13 12 11 16 16 C 1.46904 * 110.99384 * 236.04978 * 2 1 3 17 17 C 1.50700 * 109.47162 * 293.95400 * 16 2 1 18 18 O 1.21289 * 119.99985 * 359.97438 * 17 16 2 19 19 N 1.34783 * 119.99962 * 180.02562 * 17 16 2 20 20 C 1.37085 * 119.99934 * 180.02562 * 19 17 16 21 21 H 1.08004 * 120.00238 * 359.97438 * 20 19 17 22 22 C 1.38949 * 120.00041 * 179.97438 * 20 19 17 23 23 N 1.31411 * 119.99840 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 120.00208 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.46788 * 60.00047 * 24 22 20 26 26 H 1.48499 * 109.46990 * 179.97438 * 24 22 20 27 27 H 1.48493 * 109.47269 * 299.99974 * 24 22 20 28 28 H 1.08999 * 109.47018 * 59.99268 * 1 2 3 29 29 H 1.08993 * 109.47128 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46499 * 299.99478 * 1 2 3 31 31 H 1.08998 * 109.47225 * 306.05078 * 3 2 1 32 32 H 1.08998 * 109.47215 * 186.04979 * 3 2 1 33 33 H 1.09000 * 109.46916 * 59.99557 * 4 3 2 34 34 H 1.09003 * 109.47028 * 300.00445 * 4 3 2 35 35 H 1.08998 * 109.46998 * 60.00174 * 5 4 3 36 36 H 1.08998 * 109.47266 * 300.00183 * 5 4 3 37 37 H 1.09002 * 109.47079 * 263.99841 * 7 6 5 38 38 H 1.08999 * 109.46872 * 24.00015 * 7 6 5 39 39 H 1.09003 * 109.47220 * 143.99653 * 7 6 5 40 40 H 1.09004 * 109.46696 * 269.97733 * 14 13 12 41 41 H 1.09001 * 109.47585 * 29.97037 * 14 13 12 42 42 H 1.08992 * 109.47134 * 149.97740 * 14 13 12 43 43 H 1.08994 * 109.47525 * 53.95868 * 16 2 1 44 44 H 1.09004 * 109.47026 * 173.95464 * 16 2 1 45 45 H 0.97003 * 119.99858 * 359.97438 * 19 17 16 46 46 H 0.97007 * 120.00001 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9956 1.3714 0.0000 4 6 1.6316 2.0574 1.3183 5 6 2.1806 3.4855 1.3186 6 7 1.8315 4.1424 2.5807 7 6 0.5751 4.8869 2.6961 8 6 2.6665 4.0620 3.6357 9 8 3.7393 3.5027 3.5203 10 6 2.2768 4.6548 4.9347 11 7 1.1993 5.4167 5.1774 12 7 1.2253 5.7284 6.4288 13 7 2.2645 5.1967 6.9714 14 6 2.6413 5.3218 8.3815 15 7 2.9215 4.5373 6.0802 16 6 1.9954 -0.7660 -1.1377 17 6 1.6368 -2.2204 -0.9730 18 8 1.0054 -2.5833 -0.0031 19 7 2.0186 -3.1181 -1.9031 20 6 1.6920 -4.4410 -1.7536 21 1 1.1290 -4.7641 -0.8903 22 6 2.0852 -5.3664 -2.7126 23 7 2.7697 -4.9733 -3.7632 24 14 1.6407 -7.1693 -2.5085 25 1 0.1635 -7.3120 -2.4566 26 1 2.1722 -7.9434 -3.6589 27 1 2.2325 -7.6854 -1.2482 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3632 0.5138 0.8901 31 1 1.5612 1.9274 -0.8308 32 1 3.0798 1.3444 -0.1083 33 1 2.0660 1.5013 2.1492 34 1 0.5473 2.0843 1.4266 35 1 1.7465 4.0417 0.4878 36 1 3.2648 3.4581 1.2105 37 1 0.7621 5.9455 2.5157 38 1 -0.1374 4.5133 1.9606 39 1 0.1657 4.7558 3.6978 40 1 3.2811 6.1948 8.5105 41 1 1.7434 5.4366 8.9888 42 1 3.1797 4.4273 8.6944 43 1 1.5611 -0.3872 -2.0628 44 1 3.0797 -0.6611 -1.1758 45 1 2.5239 -2.8279 -2.6786 46 1 3.0445 -5.6194 -4.4326 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733776284.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:17:15 Heat of formation + Delta-G solvation = 89.203871 kcal Electronic energy + Delta-G solvation = -28503.041254 eV Core-core repulsion = 24274.585141 eV Total energy + Delta-G solvation = -4228.456113 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.181 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -44.87392 -40.15340 -38.59721 -36.91860 -36.06851 -35.57591 -33.84592 -33.64263 -32.16706 -31.18075 -29.45363 -27.92038 -27.29470 -26.82956 -25.29525 -24.47200 -23.58744 -22.73188 -20.79122 -20.40073 -19.08228 -18.31248 -18.10235 -17.78449 -17.21911 -16.74118 -15.94745 -15.80881 -15.48323 -14.93231 -14.69393 -14.56104 -14.46586 -14.21089 -14.07446 -13.80152 -13.60677 -13.33839 -13.29179 -13.25707 -12.93475 -12.37725 -12.20562 -11.98774 -11.89721 -11.60850 -11.57882 -11.44193 -11.29852 -11.18273 -11.16261 -10.86143 -10.83499 -10.58944 -10.50812 -10.40549 -10.16869 -9.42173 -9.04159 -8.38156 -7.92369 -7.77500 -6.37028 -3.77591 0.54163 1.01324 1.27351 2.33240 2.72442 3.23434 3.28632 3.33223 3.43485 3.61412 3.96434 4.06177 4.25017 4.29096 4.31722 4.56860 4.64978 4.84505 4.89808 5.02723 5.08335 5.12280 5.19753 5.28621 5.35017 5.37964 5.47172 5.49747 5.65778 5.68846 5.78352 5.79296 5.99554 6.03292 6.08151 6.12211 6.31559 6.36012 6.62609 6.83910 7.35341 7.47780 7.53913 7.59508 7.77168 8.11381 8.67451 9.23062 9.59937 10.12356 10.80727 Molecular weight = 339.18amu Principal moments of inertia in cm(-1) A = 0.022912 B = 0.001683 C = 0.001634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.792248 B =16635.117605 C =17132.508485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.519 5.519 3 C 0.059 3.941 4 C -0.132 4.132 5 C 0.118 3.882 6 N -0.593 5.593 7 C 0.068 3.932 8 C 0.613 3.387 9 O -0.502 6.502 10 C 0.134 3.866 11 N -0.253 5.253 12 N -0.059 5.059 13 N -0.132 5.132 14 C 0.091 3.909 15 N -0.246 5.246 16 C 0.046 3.954 17 C 0.445 3.555 18 O -0.577 6.577 19 N -0.565 5.565 20 C -0.298 4.298 21 H 0.102 0.898 22 C 0.022 3.978 23 N -0.903 5.903 24 Si 0.931 3.069 25 H -0.274 1.274 26 H -0.285 1.285 27 H -0.274 1.274 28 H 0.013 0.987 29 H 0.094 0.906 30 H 0.060 0.940 31 H 0.031 0.969 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.067 0.933 35 H 0.085 0.915 36 H 0.091 0.909 37 H 0.062 0.938 38 H 0.076 0.924 39 H 0.094 0.906 40 H 0.106 0.894 41 H 0.117 0.883 42 H 0.116 0.884 43 H 0.047 0.953 44 H 0.088 0.912 45 H 0.392 0.608 46 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.773 26.323 17.045 31.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.243 5.243 3 C -0.070 4.070 4 C -0.171 4.171 5 C -0.004 4.004 6 N -0.326 5.326 7 C -0.074 4.074 8 C 0.394 3.606 9 O -0.372 6.372 10 C -0.150 4.150 11 N -0.128 5.128 12 N -0.053 5.053 13 N -0.046 5.046 14 C -0.049 4.049 15 N -0.100 5.100 16 C -0.085 4.085 17 C 0.230 3.770 18 O -0.462 6.462 19 N -0.202 5.202 20 C -0.428 4.428 21 H 0.120 0.880 22 C -0.180 4.180 23 N -0.544 5.544 24 Si 0.758 3.242 25 H -0.200 1.200 26 H -0.210 1.210 27 H -0.199 1.199 28 H 0.031 0.969 29 H 0.113 0.887 30 H 0.078 0.922 31 H 0.049 0.951 32 H 0.094 0.906 33 H 0.096 0.904 34 H 0.086 0.914 35 H 0.103 0.897 36 H 0.109 0.891 37 H 0.081 0.919 38 H 0.095 0.905 39 H 0.113 0.887 40 H 0.125 0.875 41 H 0.136 0.864 42 H 0.134 0.866 43 H 0.065 0.935 44 H 0.106 0.894 45 H 0.225 0.775 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.699 25.751 18.347 31.664 hybrid contribution 0.075 -0.496 -1.364 1.453 sum -1.624 25.256 16.982 30.478 Atomic orbital electron populations 1.22560 0.86937 1.04344 0.98783 1.61523 1.08605 1.11422 1.42749 1.22023 1.00417 0.88869 0.95693 1.21954 1.01565 0.94303 0.99261 1.21632 1.02448 0.93017 0.83323 1.47558 1.21159 1.52201 1.11658 1.22252 0.84557 0.95896 1.04740 1.16168 0.84282 0.79660 0.80495 1.90886 1.21687 1.42299 1.82358 1.25282 0.92243 1.01735 0.95719 1.76251 1.18246 1.13287 1.05013 1.78945 1.07238 1.16173 1.02919 1.50258 1.13582 1.28665 1.12049 1.22599 1.04595 1.06614 0.71066 1.75124 1.21614 1.15160 0.98083 1.21860 1.00716 0.94106 0.91827 1.19764 0.85351 0.86707 0.85178 1.90480 1.43913 1.80170 1.31590 1.41860 1.49506 1.07333 1.21510 1.19646 1.32911 0.82370 1.07874 0.88006 1.25249 0.96876 1.00508 0.95331 1.69608 1.38108 1.35792 1.10908 0.85923 0.78844 0.81787 0.77677 1.19979 1.21016 1.19919 0.96869 0.88733 0.92170 0.95067 0.90613 0.90387 0.91442 0.89697 0.89080 0.91907 0.90516 0.88749 0.87522 0.86442 0.86583 0.93520 0.89371 0.77497 0.91885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 8.96 60.07 0.54 0.90 16 2 N -0.52 -8.98 4.50 -244.36 -1.10 -10.08 16 3 C 0.06 0.76 4.96 -3.82 -0.02 0.74 16 4 C -0.13 -1.55 5.46 -26.73 -0.15 -1.69 16 5 C 0.12 1.13 5.41 -4.04 -0.02 1.11 16 6 N -0.59 -6.02 2.87 -182.63 -0.52 -6.55 16 7 C 0.07 0.51 9.62 59.85 0.58 1.09 16 8 C 0.61 7.83 7.69 -12.25 -0.09 7.74 16 9 O -0.50 -7.99 16.66 5.33 0.09 -7.90 16 10 C 0.13 1.58 7.80 -156.25 -1.22 0.36 16 11 N -0.25 -2.64 9.11 32.10 0.29 -2.35 16 12 N -0.06 -0.55 13.23 60.35 0.80 0.25 16 13 N -0.13 -1.03 4.39 -16.65 -0.07 -1.10 16 14 C 0.09 0.14 11.62 59.85 0.70 0.84 16 15 N -0.25 -2.74 12.17 32.11 0.39 -2.35 16 16 C 0.05 0.85 5.45 -4.97 -0.03 0.83 16 17 C 0.44 10.76 7.47 -10.98 -0.08 10.68 16 18 O -0.58 -15.91 13.91 5.55 0.08 -15.83 16 19 N -0.57 -14.61 5.29 -10.96 -0.06 -14.67 16 20 C -0.30 -8.45 9.68 -14.94 -0.14 -8.60 16 21 H 0.10 3.02 7.16 -52.48 -0.38 2.64 16 22 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 23 N -0.90 -24.87 13.05 55.50 0.72 -24.14 16 24 Si 0.93 21.38 29.55 -169.99 -5.02 16.35 16 25 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 26 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 27 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 28 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 29 H 0.09 1.92 5.82 -51.93 -0.30 1.62 16 30 H 0.06 0.88 6.47 -51.93 -0.34 0.54 16 31 H 0.03 0.35 8.12 -51.93 -0.42 -0.07 16 32 H 0.08 0.95 7.93 -51.93 -0.41 0.53 16 33 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.07 0.76 6.55 -51.93 -0.34 0.42 16 35 H 0.08 0.60 8.07 -51.93 -0.42 0.18 16 36 H 0.09 0.95 7.37 -51.93 -0.38 0.57 16 37 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.08 0.45 8.03 -51.93 -0.42 0.04 16 39 H 0.09 0.79 5.36 -51.93 -0.28 0.51 16 40 H 0.11 -0.04 8.14 -51.93 -0.42 -0.46 16 41 H 0.12 -0.08 8.14 -51.93 -0.42 -0.51 16 42 H 0.12 0.05 8.14 -51.93 -0.42 -0.37 16 43 H 0.05 0.78 8.12 -51.93 -0.42 0.36 16 44 H 0.09 1.49 7.93 -51.93 -0.41 1.07 16 45 H 0.39 9.67 7.90 -40.82 -0.32 9.35 16 46 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 387.67 15.07 5.84 5.84 Total: -1.00 -36.96 387.67 -5.12 -42.08 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: -6.51 Total: 5.97 kcal Atomic # 6 Polarization: 14.53 SS G_CDS: -0.04 Total: 14.49 kcal Atomic # 7 Polarization: -61.44 SS G_CDS: 0.45 Total: -60.99 kcal Atomic # 8 Polarization: -23.90 SS G_CDS: 0.17 Total: -23.74 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -36.96 -5.12 -42.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733776284.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.283 kcal (2) G-P(sol) polarization free energy of solvation -36.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.079 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds