Wall clock time and date at job start Tue Mar 31 2020 23:17:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46902 * 111.00289 * 2 1 4 4 C 1.53003 * 109.46843 * 66.04935 * 3 2 1 5 5 C 1.52999 * 109.47019 * 179.97438 * 4 3 2 6 6 N 1.46502 * 109.46684 * 179.97438 * 5 4 3 7 7 C 1.46499 * 120.00156 * 269.99835 * 6 5 4 8 8 C 1.34779 * 119.99686 * 90.00595 * 6 5 4 9 9 O 1.21536 * 119.99892 * 3.73164 * 8 6 5 10 10 C 1.48007 * 119.99719 * 183.73218 * 8 6 5 11 11 N 1.34182 * 126.70040 * 352.56097 * 10 8 6 12 12 N 1.28981 * 107.25171 * 180.02562 * 11 10 8 13 13 N 1.28722 * 108.98893 * 359.97438 * 12 11 10 14 14 C 1.46499 * 125.31935 * 180.02562 * 13 12 11 15 15 N 1.28870 * 109.35605 * 0.02562 * 13 12 11 16 16 C 1.46904 * 110.99384 * 236.04978 * 2 1 3 17 17 C 1.50700 * 109.47162 * 293.95400 * 16 2 1 18 18 O 1.21289 * 119.99985 * 359.97438 * 17 16 2 19 19 N 1.34783 * 119.99962 * 180.02562 * 17 16 2 20 20 C 1.37085 * 119.99934 * 180.02562 * 19 17 16 21 21 H 1.08004 * 120.00238 * 359.97438 * 20 19 17 22 22 C 1.38949 * 120.00041 * 179.97438 * 20 19 17 23 23 N 1.31411 * 119.99840 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 120.00208 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.46788 * 60.00047 * 24 22 20 26 26 H 1.48499 * 109.46990 * 179.97438 * 24 22 20 27 27 H 1.48493 * 109.47269 * 299.99974 * 24 22 20 28 28 H 1.08999 * 109.47018 * 59.99268 * 1 2 3 29 29 H 1.08993 * 109.47128 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46499 * 299.99478 * 1 2 3 31 31 H 1.08998 * 109.47225 * 306.05078 * 3 2 1 32 32 H 1.08998 * 109.47215 * 186.04979 * 3 2 1 33 33 H 1.09000 * 109.46916 * 59.99557 * 4 3 2 34 34 H 1.09003 * 109.47028 * 300.00445 * 4 3 2 35 35 H 1.08998 * 109.46998 * 60.00174 * 5 4 3 36 36 H 1.08998 * 109.47266 * 300.00183 * 5 4 3 37 37 H 1.09002 * 109.47079 * 263.99841 * 7 6 5 38 38 H 1.08999 * 109.46872 * 24.00015 * 7 6 5 39 39 H 1.09003 * 109.47220 * 143.99653 * 7 6 5 40 40 H 1.09004 * 109.46696 * 269.97733 * 14 13 12 41 41 H 1.09001 * 109.47585 * 29.97037 * 14 13 12 42 42 H 1.08992 * 109.47134 * 149.97740 * 14 13 12 43 43 H 1.08994 * 109.47525 * 53.95868 * 16 2 1 44 44 H 1.09004 * 109.47026 * 173.95464 * 16 2 1 45 45 H 0.97003 * 119.99858 * 359.97438 * 19 17 16 46 46 H 0.97007 * 120.00001 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9956 1.3714 0.0000 4 6 1.6316 2.0574 1.3183 5 6 2.1806 3.4855 1.3186 6 7 1.8315 4.1424 2.5807 7 6 0.5751 4.8869 2.6961 8 6 2.6665 4.0620 3.6357 9 8 3.7393 3.5027 3.5203 10 6 2.2768 4.6548 4.9347 11 7 1.1993 5.4167 5.1774 12 7 1.2253 5.7284 6.4288 13 7 2.2645 5.1967 6.9714 14 6 2.6413 5.3218 8.3815 15 7 2.9215 4.5373 6.0802 16 6 1.9954 -0.7660 -1.1377 17 6 1.6368 -2.2204 -0.9730 18 8 1.0054 -2.5833 -0.0031 19 7 2.0186 -3.1181 -1.9031 20 6 1.6920 -4.4410 -1.7536 21 1 1.1290 -4.7641 -0.8903 22 6 2.0852 -5.3664 -2.7126 23 7 2.7697 -4.9733 -3.7632 24 14 1.6407 -7.1693 -2.5085 25 1 0.1635 -7.3120 -2.4566 26 1 2.1722 -7.9434 -3.6589 27 1 2.2325 -7.6854 -1.2482 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3632 0.5138 0.8901 31 1 1.5612 1.9274 -0.8308 32 1 3.0798 1.3444 -0.1083 33 1 2.0660 1.5013 2.1492 34 1 0.5473 2.0843 1.4266 35 1 1.7465 4.0417 0.4878 36 1 3.2648 3.4581 1.2105 37 1 0.7621 5.9455 2.5157 38 1 -0.1374 4.5133 1.9606 39 1 0.1657 4.7558 3.6978 40 1 3.2811 6.1948 8.5105 41 1 1.7434 5.4366 8.9888 42 1 3.1797 4.4273 8.6944 43 1 1.5611 -0.3872 -2.0628 44 1 3.0797 -0.6611 -1.1758 45 1 2.5239 -2.8279 -2.6786 46 1 3.0445 -5.6194 -4.4326 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733776284.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:17:14 Heat of formation + Delta-G solvation = 59.432284 kcal Electronic energy + Delta-G solvation = -28504.332247 eV Core-core repulsion = 24274.585141 eV Total energy + Delta-G solvation = -4229.747106 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.181 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -45.58317 -41.05647 -40.34599 -38.25690 -37.03109 -36.27277 -35.85090 -34.40236 -33.32335 -33.09025 -30.00347 -29.33459 -28.12156 -27.72890 -26.82688 -25.72099 -24.38867 -23.71880 -21.90504 -21.23941 -20.92379 -19.83521 -19.00945 -18.76755 -17.89765 -17.86132 -17.46389 -16.75607 -16.66739 -16.51387 -16.20845 -15.79461 -15.59879 -15.32015 -15.10472 -14.80812 -14.64136 -14.38255 -14.17974 -14.06250 -13.72913 -13.54073 -13.46964 -13.15428 -13.01021 -12.92529 -12.83122 -12.68550 -12.49625 -12.40030 -12.33168 -12.28867 -12.11531 -12.02951 -11.56573 -11.49953 -11.45429 -11.43355 -10.27141 -9.98548 -9.85137 -9.13716 -8.44925 -5.93517 -0.20095 0.22601 0.78517 1.40193 1.41594 1.52646 1.59673 1.83241 2.07684 2.29596 2.64790 2.84122 3.00299 3.21845 3.45569 3.78241 3.98525 4.04099 4.09379 4.17115 4.22035 4.31910 4.40448 4.42815 4.46581 4.47940 4.56043 4.58616 4.63121 4.64160 4.72877 4.76176 4.84956 4.94972 5.08064 5.14290 5.17559 5.30023 5.41982 5.46028 5.91726 6.02260 6.11249 6.28900 6.63066 6.69482 7.00377 7.14771 7.58623 8.15134 8.72225 Molecular weight = 339.18amu Principal moments of inertia in cm(-1) A = 0.022912 B = 0.001683 C = 0.001634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.792248 B =16635.117605 C =17132.508485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.546 5.546 3 C 0.061 3.939 4 C -0.121 4.121 5 C 0.121 3.879 6 N -0.585 5.585 7 C 0.067 3.933 8 C 0.606 3.394 9 O -0.547 6.547 10 C 0.116 3.884 11 N -0.256 5.256 12 N -0.064 5.064 13 N -0.115 5.115 14 C 0.072 3.928 15 N -0.269 5.269 16 C 0.059 3.941 17 C 0.440 3.560 18 O -0.616 6.616 19 N -0.575 5.575 20 C -0.334 4.334 21 H 0.078 0.922 22 C -0.013 4.013 23 N -0.920 5.920 24 Si 0.993 3.007 25 H -0.272 1.272 26 H -0.269 1.269 27 H -0.274 1.274 28 H 0.035 0.965 29 H 0.050 0.950 30 H 0.077 0.923 31 H 0.061 0.939 32 H 0.079 0.921 33 H 0.041 0.959 34 H 0.075 0.925 35 H 0.123 0.877 36 H 0.080 0.920 37 H 0.075 0.925 38 H 0.099 0.901 39 H 0.085 0.915 40 H 0.131 0.869 41 H 0.144 0.856 42 H 0.128 0.872 43 H 0.071 0.929 44 H 0.107 0.893 45 H 0.396 0.604 46 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.290 28.036 16.927 32.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.271 5.271 3 C -0.066 4.066 4 C -0.160 4.160 5 C -0.001 4.001 6 N -0.317 5.317 7 C -0.075 4.075 8 C 0.389 3.611 9 O -0.421 6.421 10 C -0.167 4.167 11 N -0.130 5.130 12 N -0.057 5.057 13 N -0.030 5.030 14 C -0.065 4.065 15 N -0.125 5.125 16 C -0.072 4.072 17 C 0.227 3.773 18 O -0.502 6.502 19 N -0.212 5.212 20 C -0.463 4.463 21 H 0.096 0.904 22 C -0.213 4.213 23 N -0.561 5.561 24 Si 0.816 3.184 25 H -0.197 1.197 26 H -0.194 1.194 27 H -0.199 1.199 28 H 0.053 0.947 29 H 0.069 0.931 30 H 0.095 0.905 31 H 0.079 0.921 32 H 0.098 0.902 33 H 0.060 0.940 34 H 0.093 0.907 35 H 0.141 0.859 36 H 0.098 0.902 37 H 0.094 0.906 38 H 0.118 0.882 39 H 0.104 0.896 40 H 0.149 0.851 41 H 0.162 0.838 42 H 0.146 0.854 43 H 0.089 0.911 44 H 0.125 0.875 45 H 0.230 0.770 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -2.243 27.515 18.218 33.076 hybrid contribution 0.209 -0.940 -1.180 1.524 sum -2.034 26.575 17.038 31.633 Atomic orbital electron populations 1.22417 0.86833 1.02038 1.00689 1.61456 1.09015 1.14066 1.42574 1.22083 1.00699 0.86714 0.97134 1.21832 1.01752 0.95045 0.97409 1.21671 1.02098 0.92180 0.84130 1.47698 1.21416 1.51415 1.11146 1.22417 0.83641 0.96444 1.05026 1.16439 0.84097 0.79269 0.81330 1.90847 1.23559 1.44522 1.83195 1.25153 0.93078 1.02779 0.95696 1.76229 1.17875 1.13245 1.05664 1.78865 1.07752 1.16405 1.02665 1.50773 1.12377 1.26669 1.13174 1.23260 1.06615 1.08328 0.68260 1.75079 1.22535 1.16236 0.98618 1.21726 1.01994 0.90071 0.93440 1.20850 0.83661 0.88924 0.83839 1.90458 1.45260 1.81507 1.33008 1.41930 1.50082 1.07020 1.22205 1.19615 1.34486 0.84163 1.08074 0.90447 1.26026 0.96281 1.04288 0.94679 1.69669 1.38062 1.37211 1.11165 0.84995 0.78616 0.76796 0.77947 1.19679 1.19392 1.19913 0.94653 0.93082 0.90469 0.92083 0.90242 0.93962 0.90688 0.85930 0.90155 0.90601 0.88214 0.89635 0.85096 0.83800 0.85378 0.91071 0.87510 0.77006 0.91325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.90 8.96 127.69 1.14 2.05 16 2 N -0.55 -18.26 4.50 -927.03 -4.17 -22.44 16 3 C 0.06 1.44 4.96 86.30 0.43 1.87 16 4 C -0.12 -2.67 5.46 30.60 0.17 -2.50 16 5 C 0.12 2.08 5.41 86.38 0.47 2.55 16 6 N -0.59 -11.26 2.87 -850.00 -2.44 -13.70 16 7 C 0.07 0.87 9.62 127.77 1.23 2.09 16 8 C 0.61 15.74 7.69 86.83 0.67 16.40 16 9 O -0.55 -18.15 16.66 -3.83 -0.06 -18.21 16 10 C 0.12 2.76 7.80 137.15 1.07 3.83 16 11 N -0.26 -5.19 9.11 -52.37 -0.48 -5.67 16 12 N -0.06 -1.11 13.23 37.02 0.49 -0.62 16 13 N -0.11 -1.67 4.39 -206.59 -0.91 -2.58 16 14 C 0.07 0.08 11.62 127.77 1.49 1.57 16 15 N -0.27 -6.00 12.17 -52.32 -0.64 -6.64 16 16 C 0.06 2.10 5.45 85.56 0.47 2.57 16 17 C 0.44 21.64 7.47 87.66 0.66 22.30 16 18 O -0.62 -35.14 13.91 -3.06 -0.04 -35.18 16 19 N -0.57 -30.28 5.29 -306.99 -1.62 -31.90 16 20 C -0.33 -19.39 9.68 84.04 0.81 -18.58 16 21 H 0.08 4.79 7.16 -2.91 -0.02 4.77 16 22 C -0.01 -0.71 5.50 84.93 0.47 -0.24 16 23 N -0.92 -50.39 13.05 21.66 0.28 -50.11 16 24 Si 0.99 43.78 29.55 68.60 2.03 45.81 16 25 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 26 H -0.27 -11.14 7.11 99.48 0.71 -10.44 16 27 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 28 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.05 2.11 5.82 -2.39 -0.01 2.09 16 30 H 0.08 2.16 6.47 -2.39 -0.02 2.15 16 31 H 0.06 1.12 8.12 -2.39 -0.02 1.10 16 32 H 0.08 1.82 7.93 -2.39 -0.02 1.80 16 33 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.07 1.52 6.55 -2.39 -0.02 1.50 16 35 H 0.12 1.23 8.07 -2.39 -0.02 1.21 16 36 H 0.08 1.61 7.37 -2.39 -0.02 1.59 16 37 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 38 H 0.10 0.85 8.03 -2.39 -0.02 0.83 16 39 H 0.09 1.33 5.36 -2.39 -0.01 1.32 16 40 H 0.13 -0.42 8.14 -2.39 -0.02 -0.44 16 41 H 0.14 -0.58 8.14 -2.39 -0.02 -0.60 16 42 H 0.13 -0.11 8.14 -2.39 -0.02 -0.13 16 43 H 0.07 2.22 8.12 -2.39 -0.02 2.20 16 44 H 0.11 3.42 7.93 -2.38 -0.02 3.40 16 45 H 0.40 19.75 7.90 -92.71 -0.73 19.01 16 46 H 0.28 14.24 8.31 -92.70 -0.77 13.47 16 Total: -1.00 -83.72 387.67 1.79 -81.94 By element: Atomic # 1 Polarization: 25.11 SS G_CDS: 0.29 Total: 25.40 kcal Atomic # 6 Polarization: 24.85 SS G_CDS: 9.06 Total: 33.91 kcal Atomic # 7 Polarization: -124.17 SS G_CDS: -9.49 Total: -133.66 kcal Atomic # 8 Polarization: -53.29 SS G_CDS: -0.11 Total: -53.40 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.81 kcal Total: -83.72 1.79 -81.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733776284.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.369 kcal (2) G-P(sol) polarization free energy of solvation -83.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.937 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds