Wall clock time and date at job start Tue Mar 31 2020 23:15:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86797 * 119.99779 * 2 1 4 4 H 1.48507 * 109.46650 * 239.99893 * 3 2 1 5 5 H 1.48491 * 109.47347 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47359 * 120.00227 * 3 2 1 7 7 C 1.38952 * 119.99946 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99914 * 180.02562 * 7 2 1 9 9 N 1.37097 * 119.99813 * 0.02562 * 7 2 1 10 10 C 1.34779 * 119.99292 * 179.97438 * 9 7 2 11 11 O 1.21292 * 120.00664 * 359.97438 * 10 9 7 12 12 C 1.50700 * 119.99645 * 179.97438 * 10 9 7 13 13 N 1.46898 * 109.47434 * 180.02562 * 12 10 9 14 14 C 1.48188 * 111.07602 * 70.70397 * 13 12 10 15 15 C 1.53936 * 86.21984 * 137.46884 * 14 13 12 16 16 C 1.47959 * 111.00288 * 170.00199 * 13 12 10 17 17 H 1.09000 * 113.75892 * 336.83833 * 16 13 12 18 18 C 1.52997 * 113.76184 * 108.10022 * 16 13 12 19 19 N 1.46500 * 109.46883 * 303.01724 * 18 16 13 20 20 C 1.34774 * 120.00150 * 180.02562 * 19 18 16 21 21 O 1.21287 * 120.00148 * 0.02562 * 20 19 18 22 22 C 1.50699 * 120.00535 * 179.97438 * 20 19 18 23 23 O 1.42900 * 109.47567 * 180.02562 * 22 20 19 24 24 C 1.42899 * 113.99647 * 180.02562 * 23 22 20 25 25 C 1.54894 * 110.75348 * 150.00266 * 24 23 22 26 26 C 1.54266 * 104.31305 * 156.31802 * 25 24 23 27 27 C 1.53869 * 106.60031 * 336.32486 * 26 25 24 28 28 C 1.54266 * 106.59800 * 359.97438 * 27 26 25 29 29 H 0.97000 * 120.00353 * 0.02562 * 1 2 3 30 30 H 0.96995 * 120.00668 * 359.97438 * 9 7 2 31 31 H 1.09006 * 109.47421 * 59.99693 * 12 10 9 32 32 H 1.09001 * 109.47502 * 299.99689 * 12 10 9 33 33 H 1.08996 * 113.65270 * 23.14439 * 14 13 12 34 34 H 1.08994 * 113.92329 * 251.82350 * 14 13 12 35 35 H 1.09013 * 113.73271 * 222.01530 * 15 14 13 36 36 H 1.08996 * 113.83417 * 90.74738 * 15 14 13 37 37 H 1.08998 * 109.47424 * 183.01959 * 18 16 13 38 38 H 1.08996 * 109.47549 * 63.01789 * 18 16 13 39 39 H 0.97000 * 120.00080 * 0.02562 * 19 18 16 40 40 H 1.09006 * 109.46870 * 59.99459 * 22 20 19 41 41 H 1.09005 * 109.46876 * 300.00217 * 22 20 19 42 42 H 1.08993 * 110.82239 * 26.65876 * 24 23 22 43 43 H 1.09002 * 110.48891 * 37.57228 * 25 24 23 44 44 H 1.08998 * 110.48494 * 275.06315 * 25 24 23 45 45 H 1.09001 * 110.03084 * 95.60669 * 26 25 24 46 46 H 1.08996 * 110.03108 * 216.98559 * 26 25 24 47 47 H 1.08999 * 110.04012 * 119.28327 * 27 26 25 48 48 H 1.09003 * 110.03070 * 240.71854 * 27 26 25 49 49 H 1.09005 * 110.48526 * 142.29451 * 28 27 26 50 50 H 1.09007 * 110.48724 * 264.79935 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1018 1.6963 -1.2126 5 1 1.2831 2.7464 -0.0006 6 1 3.1019 1.6965 1.2125 7 6 2.0089 -1.2034 0.0005 8 1 3.0889 -1.2034 0.0010 9 7 1.3234 -2.3906 0.0005 10 6 1.9974 -3.5578 0.0005 11 8 3.2103 -3.5578 0.0001 12 6 1.2439 -4.8629 0.0011 13 7 2.1984 -5.9795 0.0016 14 6 2.8920 -6.0870 1.3067 15 6 2.6837 -7.6067 1.1770 16 6 1.5090 -7.2664 0.2420 17 1 0.5537 -7.1634 0.7566 18 6 1.4268 -8.1623 -0.9955 19 7 0.7552 -7.4390 -2.0781 20 6 0.5684 -8.0351 -3.2724 21 8 0.9559 -9.1705 -3.4507 22 6 -0.1229 -7.2913 -4.3859 23 8 -0.2007 -8.1284 -5.5415 24 6 -0.8419 -7.5148 -6.6614 25 6 -0.2733 -8.0695 -7.9912 26 6 -1.3974 -7.8238 -9.0187 27 6 -2.7098 -7.7315 -8.2207 28 6 -2.3375 -7.9251 -6.7362 29 1 -0.4851 0.8400 -0.0004 30 1 0.3534 -2.3907 0.0005 31 1 0.6168 -4.9209 -0.8886 32 1 0.6176 -4.9206 0.8914 33 1 2.3414 -5.6372 2.1329 34 1 3.9383 -5.7832 1.2776 35 1 2.3793 -8.0888 2.1062 36 1 3.5048 -8.1230 0.6798 37 1 0.8619 -9.0629 -0.7552 38 1 2.4327 -8.4380 -1.3120 39 1 0.4450 -6.5311 -1.9355 40 1 0.4418 -6.3906 -4.6266 41 1 -1.1288 -7.0157 -4.0690 42 1 -0.7400 -6.4305 -6.6201 43 1 -0.0646 -9.1356 -7.9017 44 1 0.6287 -7.5277 -8.2757 45 1 -1.2184 -6.8901 -9.5519 46 1 -1.4461 -8.6531 -9.7243 47 1 -3.1677 -6.7532 -8.3667 48 1 -3.3960 -8.5166 -8.5385 49 1 -2.9426 -7.2757 -6.1034 50 1 -2.4647 -8.9674 -6.4437 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001483633708.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:15:16 Heat of formation + Delta-G solvation = -91.133733 kcal Electronic energy + Delta-G solvation = -29313.874804 eV Core-core repulsion = 25148.846258 eV Total energy + Delta-G solvation = -4165.028546 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.38265 -39.61029 -38.70743 -37.75454 -36.10662 -34.52862 -33.96309 -31.44065 -30.74044 -29.72367 -28.99748 -28.12175 -26.53013 -25.82276 -23.75085 -23.10470 -21.05670 -20.74912 -20.50862 -19.60546 -19.32055 -17.97256 -17.44785 -17.40045 -16.29096 -16.20250 -15.85973 -15.76769 -15.62786 -15.02394 -14.82654 -14.55759 -14.41764 -14.03618 -13.84115 -13.73252 -13.57332 -13.36179 -12.83537 -12.67544 -12.39248 -12.35579 -12.00261 -11.74040 -11.68979 -11.54393 -11.53017 -11.43716 -11.37033 -11.09124 -10.85582 -10.81659 -10.72472 -10.64526 -10.48998 -10.26944 -9.80624 -9.74892 -9.55676 -9.07875 -8.74299 -8.30359 -8.03228 -6.48184 -3.89133 2.58509 2.69725 3.15282 3.21690 3.25852 3.69118 3.80248 3.94351 4.15781 4.25908 4.32732 4.47380 4.62351 4.68496 4.71545 4.88856 4.90735 4.97991 4.99581 5.03007 5.14821 5.16368 5.22141 5.29857 5.35279 5.35749 5.38894 5.45635 5.56614 5.60662 5.61806 5.69815 5.73838 5.76951 5.83526 5.85926 5.91266 6.02009 6.02656 6.16965 6.25161 6.36972 6.56343 6.92274 7.13888 7.44988 7.48949 7.98620 8.18668 8.54140 9.11425 9.46507 9.98144 10.69372 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.008250 B = 0.002560 C = 0.002037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3393.246220 B =10935.098825 C =13741.179175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.023 3.977 3 Si 0.930 3.070 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.300 4.300 8 H 0.102 0.898 9 N -0.563 5.563 10 C 0.442 3.558 11 O -0.576 6.576 12 C 0.010 3.990 13 N -0.446 5.446 14 C 0.022 3.978 15 C -0.136 4.136 16 C 0.006 3.994 17 H 0.084 0.916 18 C 0.146 3.854 19 N -0.720 5.720 20 C 0.515 3.485 21 O -0.526 6.526 22 C 0.042 3.958 23 O -0.352 6.352 24 C 0.078 3.922 25 C -0.121 4.121 26 C -0.123 4.123 27 C -0.123 4.123 28 C -0.147 4.147 29 H 0.272 0.728 30 H 0.391 0.609 31 H 0.082 0.918 32 H 0.056 0.944 33 H 0.067 0.933 34 H 0.096 0.904 35 H 0.073 0.927 36 H 0.093 0.907 37 H 0.070 0.930 38 H 0.075 0.925 39 H 0.401 0.599 40 H 0.083 0.917 41 H 0.079 0.921 42 H 0.073 0.927 43 H 0.078 0.922 44 H 0.071 0.929 45 H 0.066 0.934 46 H 0.067 0.933 47 H 0.065 0.935 48 H 0.066 0.934 49 H 0.066 0.934 50 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.011 -15.248 -8.271 18.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.179 4.179 3 Si 0.757 3.243 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.199 1.199 7 C -0.429 4.429 8 H 0.120 0.880 9 N -0.200 5.200 10 C 0.227 3.773 11 O -0.460 6.460 12 C -0.122 4.122 13 N -0.169 5.169 14 C -0.107 4.107 15 C -0.175 4.175 16 C -0.104 4.104 17 H 0.101 0.899 18 C 0.022 3.978 19 N -0.374 5.374 20 C 0.300 3.700 21 O -0.401 6.401 22 C -0.038 4.038 23 O -0.270 6.270 24 C 0.020 3.980 25 C -0.159 4.159 26 C -0.161 4.161 27 C -0.161 4.161 28 C -0.185 4.185 29 H 0.082 0.918 30 H 0.224 0.776 31 H 0.100 0.900 32 H 0.074 0.926 33 H 0.085 0.915 34 H 0.114 0.886 35 H 0.091 0.909 36 H 0.111 0.889 37 H 0.089 0.911 38 H 0.093 0.907 39 H 0.237 0.763 40 H 0.101 0.899 41 H 0.097 0.903 42 H 0.091 0.909 43 H 0.097 0.903 44 H 0.090 0.910 45 H 0.085 0.915 46 H 0.086 0.914 47 H 0.084 0.916 48 H 0.084 0.916 49 H 0.085 0.915 50 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -5.606 -15.979 -9.028 19.190 hybrid contribution -1.200 1.799 0.817 2.312 sum -6.806 -14.180 -8.210 17.743 Atomic orbital electron populations 1.69596 1.05933 1.28330 1.50481 1.25256 0.95635 0.99726 0.97233 0.85923 0.78790 0.80432 0.79130 1.19855 1.20945 1.19886 1.19643 0.93330 0.82185 1.47757 0.87982 1.41862 1.09121 1.04596 1.64449 1.19624 0.88388 0.84401 0.84840 1.90537 1.13573 1.86905 1.54974 1.22500 0.95258 0.93153 1.01326 1.68495 1.17847 0.99034 1.31558 1.23712 1.02247 0.93882 0.90860 1.23386 0.97588 0.97610 0.98868 1.23851 0.97921 0.93098 0.95539 0.89860 1.21262 0.98084 0.93710 0.84707 1.45811 1.60775 1.18639 1.12165 1.20200 0.79733 0.87011 0.83068 1.90715 1.49711 1.18181 1.81539 1.22267 1.00770 0.93918 0.86862 1.88024 1.79372 1.39471 1.20124 1.23319 0.91776 0.96791 0.86108 1.22401 0.98158 1.02592 0.92742 1.22075 0.94309 1.02012 0.97706 1.22040 0.97502 1.01959 0.94577 1.22902 0.96113 1.02693 0.96750 0.91782 0.77554 0.89964 0.92638 0.91505 0.88580 0.90850 0.88858 0.91135 0.90681 0.76343 0.89893 0.90318 0.90872 0.90342 0.91029 0.91549 0.91393 0.91621 0.91552 0.91505 0.90482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.83 13.05 55.50 0.72 -23.10 16 2 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 3 Si 0.93 20.61 29.55 -169.99 -5.02 15.59 16 4 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 5 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 6 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 7 C -0.30 -8.12 9.68 -14.93 -0.14 -8.26 16 8 H 0.10 2.92 7.16 -52.49 -0.38 2.54 16 9 N -0.56 -13.68 5.29 -10.96 -0.06 -13.74 16 10 C 0.44 9.94 7.59 -10.98 -0.08 9.86 16 11 O -0.58 -15.11 15.14 5.55 0.08 -15.03 16 12 C 0.01 0.16 5.10 -4.98 -0.03 0.13 16 13 N -0.45 -6.77 5.58 -231.16 -1.29 -8.06 16 14 C 0.02 0.31 6.77 -2.64 -0.02 0.29 16 15 C -0.14 -1.46 7.84 -25.79 -0.20 -1.66 16 16 C 0.01 0.07 3.43 -66.65 -0.23 -0.16 16 17 H 0.08 0.83 7.79 -51.93 -0.40 0.43 16 18 C 0.15 1.71 5.83 -4.04 -0.02 1.69 16 19 N -0.72 -8.66 5.48 -60.30 -0.33 -8.99 16 20 C 0.51 7.07 7.91 -10.99 -0.09 6.98 16 21 O -0.53 -9.30 16.50 -14.36 -0.24 -9.53 16 22 C 0.04 0.46 6.26 36.01 0.23 0.69 16 23 O -0.35 -4.48 9.67 -55.14 -0.53 -5.02 16 24 C 0.08 0.75 3.41 -24.53 -0.08 0.67 16 25 C -0.12 -1.07 6.54 -25.07 -0.16 -1.23 16 26 C -0.12 -0.86 6.80 -25.62 -0.17 -1.04 16 27 C -0.12 -0.86 6.80 -25.62 -0.17 -1.03 16 28 C -0.15 -1.23 6.57 -24.87 -0.16 -1.39 16 29 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 30 H 0.39 9.02 7.90 -40.82 -0.32 8.70 16 31 H 0.08 1.15 6.52 -51.93 -0.34 0.81 16 32 H 0.06 0.80 7.69 -51.93 -0.40 0.40 16 33 H 0.07 0.94 7.78 -51.93 -0.40 0.54 16 34 H 0.10 1.56 8.10 -51.93 -0.42 1.14 16 35 H 0.07 0.63 8.14 -51.92 -0.42 0.21 16 36 H 0.09 0.98 7.92 -51.93 -0.41 0.57 16 37 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.07 0.99 7.87 -51.93 -0.41 0.58 16 39 H 0.40 4.39 6.49 -40.82 -0.27 4.12 16 40 H 0.08 0.81 8.12 -51.93 -0.42 0.39 16 41 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 42 H 0.07 0.63 7.83 -51.93 -0.41 0.22 16 43 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 46 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 47 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 48 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 49 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 50 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 406.66 15.07 6.13 6.13 Total: -1.00 -33.74 406.66 -10.34 -44.08 By element: Atomic # 1 Polarization: 20.00 SS G_CDS: -8.36 Total: 11.64 kcal Atomic # 6 Polarization: 7.48 SS G_CDS: -1.44 Total: 6.04 kcal Atomic # 7 Polarization: -52.94 SS G_CDS: -0.95 Total: -53.90 kcal Atomic # 8 Polarization: -28.89 SS G_CDS: -0.69 Total: -29.58 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -33.74 -10.34 -44.08 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483633708.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.052 kcal (2) G-P(sol) polarization free energy of solvation -33.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds