Wall clock time and date at job start Tue Mar 31 2020 23:37:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.32997 * 120.00068 * 2 1 4 4 C 1.50695 * 119.99943 * 359.97438 * 3 2 1 5 5 C 1.47098 * 119.99795 * 180.02562 * 3 2 1 6 6 O 1.21609 * 120.00334 * 22.87269 * 5 3 2 7 7 N 1.34786 * 119.99603 * 202.87674 * 5 3 2 8 8 C 1.47506 * 118.75411 * 174.82144 * 7 5 3 9 9 C 1.53204 * 111.23452 * 221.50856 * 8 7 5 10 10 C 1.51533 * 109.42918 * 40.26236 * 9 8 7 11 11 O 1.42152 * 108.76696 * 268.50372 * 10 9 8 12 12 C 1.38021 * 119.43451 * 87.21943 * 11 10 9 13 13 H 1.08998 * 109.47099 * 56.57901 * 12 11 10 14 14 C 1.53005 * 109.46389 * 176.57037 * 12 11 10 15 15 N 1.46897 * 109.47220 * 300.01116 * 14 12 11 16 16 C 1.46899 * 110.99938 * 180.02562 * 15 14 12 17 17 C 1.50698 * 109.46995 * 179.97438 * 16 15 14 18 18 O 1.21288 * 120.00365 * 0.02562 * 17 16 15 19 19 N 1.34777 * 120.00127 * 179.97438 * 17 16 15 20 20 C 1.37099 * 120.00395 * 180.02562 * 19 17 16 21 21 H 1.07993 * 119.99683 * 0.02562 * 20 19 17 22 22 C 1.38945 * 120.00145 * 180.02562 * 20 19 17 23 23 N 1.31412 * 120.00096 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 120.00101 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.46949 * 90.00150 * 24 22 20 26 26 H 1.48497 * 109.47241 * 209.99639 * 24 22 20 27 27 H 1.48504 * 109.47085 * 330.00028 * 24 22 20 28 28 C 1.45122 * 118.75699 * 355.08347 * 7 5 3 29 29 H 1.08999 * 109.46967 * 299.72734 * 1 2 3 30 30 H 1.09001 * 109.46566 * 59.72945 * 1 2 3 31 31 H 1.09004 * 109.46658 * 179.72667 * 1 2 3 32 32 H 1.08000 * 119.99788 * 180.27427 * 2 1 3 33 33 H 1.08995 * 109.47206 * 109.51277 * 4 3 2 34 34 H 1.08999 * 109.47084 * 229.51431 * 4 3 2 35 35 H 1.09005 * 109.47342 * 349.51237 * 4 3 2 36 36 H 1.08999 * 109.16897 * 342.02295 * 8 7 5 37 37 H 1.09001 * 109.16763 * 101.22644 * 8 7 5 38 38 H 1.08999 * 109.60849 * 280.22561 * 9 8 7 39 39 H 1.08998 * 109.44966 * 160.20561 * 9 8 7 40 40 H 1.09004 * 109.58361 * 148.72746 * 10 9 8 41 41 H 1.08994 * 109.71146 * 28.36434 * 10 9 8 42 42 H 1.08995 * 109.47022 * 60.01409 * 14 12 11 43 43 H 1.09003 * 109.46684 * 180.02562 * 14 12 11 44 44 H 1.00905 * 110.99765 * 303.95660 * 15 14 12 45 45 H 1.09000 * 109.47211 * 299.99753 * 16 15 14 46 46 H 1.08999 * 109.47056 * 59.99918 * 16 15 14 47 47 H 0.97002 * 119.99837 * 0.02562 * 19 17 16 48 48 H 0.97004 * 120.00291 * 179.97438 * 23 22 20 49 49 H 1.08999 * 109.46149 * 210.72796 * 28 7 5 50 50 H 1.09003 * 109.45840 * 330.70539 * 28 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1518 0.0000 4 6 1.4186 2.4568 -0.0006 5 6 3.6430 1.1517 -0.0006 6 8 4.2509 0.1815 -0.4104 7 7 4.3171 2.2271 0.4532 8 6 5.7873 2.1546 0.5488 9 6 6.2919 2.8021 1.8423 10 6 5.3631 2.4390 2.9833 11 8 4.3600 3.4403 3.0928 12 6 3.2092 3.3329 2.3384 13 1 2.7254 2.3789 2.5477 14 6 2.2573 4.4765 2.6949 15 7 1.9164 4.4030 4.1219 16 6 1.0013 5.4878 4.5010 17 6 0.6744 5.3796 5.9681 18 8 1.1567 4.4869 6.6326 19 7 -0.1530 6.2753 6.5420 20 6 -0.4501 6.1772 7.8769 21 1 -0.0206 5.3823 8.4685 22 6 -1.3035 7.1003 8.4684 23 7 -1.8257 8.0678 7.7486 24 14 -1.7088 6.9662 10.2870 25 1 -0.7210 7.7481 11.0732 26 1 -3.0718 7.5024 10.5313 27 1 -1.6556 5.5413 10.7022 28 6 3.5686 3.4104 0.8347 29 1 -0.3633 0.5096 0.8924 30 1 -0.3632 0.5181 -0.8876 31 1 -0.3633 -1.0277 -0.0049 32 1 2.0470 -0.9353 -0.0045 33 1 1.5338 2.9433 0.9679 34 1 1.8150 3.1049 -0.7822 35 1 0.3618 2.2662 -0.1880 36 1 6.0962 1.1095 0.5278 37 1 6.2273 2.6740 -0.3025 38 1 6.3154 3.8854 1.7241 39 1 7.2960 2.4394 2.0620 40 1 5.9298 2.3863 3.9130 41 1 4.8964 1.4743 2.7847 42 1 2.7411 5.4305 2.4855 43 1 1.3483 4.3914 2.0995 44 1 1.5251 3.5024 4.3542 45 1 1.4760 6.4491 4.3041 46 1 0.0837 5.4096 3.9179 47 1 -0.5385 6.9895 6.0107 48 1 -2.4218 8.7121 8.1614 49 1 4.1741 4.2980 0.6512 50 1 2.6534 3.4668 0.2453 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001200216621.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:37:30 Heat of formation + Delta-G solvation = -53.261855 kcal Electronic energy + Delta-G solvation = -30466.532890 eV Core-core repulsion = 26303.146591 eV Total energy + Delta-G solvation = -4163.386298 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.20920 -38.95424 -38.20157 -36.50850 -35.73498 -35.30557 -33.91284 -33.25075 -31.20969 -30.12612 -29.80200 -27.51527 -26.56605 -26.25887 -24.78400 -23.38160 -22.44167 -21.54753 -20.26264 -19.23260 -18.83870 -17.88517 -17.35967 -16.97238 -16.90344 -16.36463 -15.91726 -15.35345 -15.21761 -14.98173 -14.50766 -14.41289 -14.24008 -14.11061 -13.80360 -13.70052 -13.48972 -13.42549 -13.22354 -13.15427 -12.95425 -12.71266 -12.48928 -12.22503 -11.84765 -11.70890 -11.61027 -11.50706 -11.46468 -11.16885 -11.02736 -10.93140 -10.58421 -10.38518 -10.20580 -9.98827 -9.66581 -9.49372 -9.39964 -8.76819 -8.42755 -8.01155 -7.93602 -6.40492 -3.81068 1.09343 2.60966 2.90166 3.18916 3.27356 3.33252 3.54573 3.92736 3.99449 4.17347 4.31007 4.50765 4.54241 4.63676 4.65599 4.79976 4.84279 4.89788 4.94669 5.02454 5.06240 5.14057 5.16922 5.22032 5.24525 5.27365 5.28466 5.37495 5.44263 5.47036 5.52164 5.57064 5.62733 5.76084 5.79627 5.87668 5.90228 5.99331 6.05844 6.14274 6.25745 6.27883 7.05160 7.20558 7.56592 7.58428 7.70297 7.86894 8.08106 8.63225 9.19672 9.56155 10.08001 10.77372 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.015917 B = 0.002317 C = 0.002141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1758.656057 B =12083.771515 C =13076.398239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.070 4.070 3 C -0.193 4.193 4 C -0.139 4.139 5 C 0.552 3.448 6 O -0.546 6.546 7 N -0.600 5.600 8 C 0.110 3.890 9 C -0.166 4.166 10 C 0.075 3.925 11 O -0.359 6.359 12 C 0.095 3.905 13 H 0.049 0.951 14 C 0.066 3.934 15 N -0.657 5.657 16 C 0.051 3.949 17 C 0.442 3.558 18 O -0.581 6.581 19 N -0.565 5.565 20 C -0.298 4.298 21 H 0.103 0.897 22 C 0.022 3.978 23 N -0.903 5.903 24 Si 0.929 3.071 25 H -0.278 1.278 26 H -0.284 1.284 27 H -0.270 1.270 28 C 0.009 3.991 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.068 0.932 32 H 0.123 0.877 33 H 0.091 0.909 34 H 0.079 0.921 35 H 0.075 0.925 36 H 0.089 0.911 37 H 0.064 0.936 38 H 0.081 0.919 39 H 0.086 0.914 40 H 0.092 0.908 41 H 0.048 0.952 42 H 0.082 0.918 43 H 0.043 0.957 44 H 0.348 0.652 45 H 0.087 0.913 46 H 0.042 0.958 47 H 0.392 0.608 48 H 0.271 0.729 49 H 0.084 0.916 50 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.876 -9.338 -20.178 23.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.090 4.090 3 C -0.196 4.196 4 C -0.194 4.194 5 C 0.342 3.658 6 O -0.425 6.425 7 N -0.332 5.332 8 C -0.012 4.012 9 C -0.204 4.204 10 C -0.002 4.002 11 O -0.277 6.277 12 C 0.034 3.966 13 H 0.067 0.933 14 C -0.064 4.064 15 N -0.289 5.289 16 C -0.082 4.082 17 C 0.227 3.773 18 O -0.465 6.465 19 N -0.202 5.202 20 C -0.428 4.428 21 H 0.120 0.880 22 C -0.180 4.180 23 N -0.545 5.545 24 Si 0.757 3.243 25 H -0.204 1.204 26 H -0.210 1.210 27 H -0.194 1.194 28 C -0.114 4.114 29 H 0.097 0.903 30 H 0.095 0.905 31 H 0.087 0.913 32 H 0.141 0.859 33 H 0.109 0.891 34 H 0.097 0.903 35 H 0.093 0.907 36 H 0.107 0.893 37 H 0.082 0.918 38 H 0.100 0.900 39 H 0.104 0.896 40 H 0.110 0.890 41 H 0.066 0.934 42 H 0.101 0.899 43 H 0.061 0.939 44 H 0.167 0.833 45 H 0.105 0.895 46 H 0.060 0.940 47 H 0.225 0.775 48 H 0.081 0.919 49 H 0.102 0.898 50 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 9.014 -9.784 -19.558 23.654 hybrid contribution -1.114 0.061 -0.015 1.116 sum 7.900 -9.723 -19.573 23.239 Atomic orbital electron populations 1.21026 0.91838 1.03272 1.02869 1.23542 0.96474 0.97522 0.91431 1.21300 0.92502 0.96821 1.08990 1.21512 1.00303 0.94520 1.03095 1.18570 0.87959 0.82138 0.77116 1.90767 1.70134 1.34375 1.47236 1.47695 1.06888 1.14360 1.64235 1.21757 0.78918 1.02787 0.97726 1.22436 1.00369 1.02566 0.95036 1.22150 0.88927 0.90944 0.98188 1.86453 1.27625 1.48444 1.65174 1.22056 0.86849 0.98430 0.89267 0.93289 1.22012 0.95912 0.98628 0.89830 1.59917 1.47386 1.06707 1.14910 1.21687 0.94574 0.96156 0.95759 1.19804 0.83665 0.85238 0.88587 1.90532 1.55336 1.36254 1.64360 1.41862 1.41378 1.26716 1.10244 1.19699 1.25484 1.12768 0.84803 0.87955 1.25249 0.96798 0.95562 1.00356 1.69612 1.32377 1.15706 1.36758 0.85866 0.77554 0.78736 0.82185 1.20396 1.20967 1.19435 1.24203 1.00895 0.88117 0.98210 0.90341 0.90540 0.91279 0.85874 0.89086 0.90271 0.90656 0.89292 0.91752 0.90047 0.89571 0.88989 0.93407 0.89925 0.93881 0.83299 0.89502 0.93989 0.77486 0.91913 0.89750 0.84126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.80 8.70 36.01 0.31 -0.49 16 2 C -0.07 -0.60 9.82 -36.12 -0.35 -0.96 16 3 C -0.19 -1.79 5.74 -102.85 -0.59 -2.38 16 4 C -0.14 -0.92 7.67 36.00 0.28 -0.64 16 5 C 0.55 6.47 7.47 -12.66 -0.09 6.38 16 6 O -0.55 -8.13 15.78 5.27 0.08 -8.04 16 7 N -0.60 -6.03 2.20 -174.09 -0.38 -6.42 16 8 C 0.11 1.02 6.09 -3.39 -0.02 1.00 16 9 C -0.17 -1.41 5.78 -27.37 -0.16 -1.57 16 10 C 0.07 0.81 6.36 36.42 0.23 1.04 16 11 O -0.36 -4.70 9.32 -26.56 -0.25 -4.94 16 12 C 0.09 1.03 1.91 -25.78 -0.05 0.98 16 13 H 0.05 0.58 7.75 -51.93 -0.40 0.17 16 14 C 0.07 0.74 5.20 -3.82 -0.02 0.73 16 15 N -0.66 -10.44 5.98 -115.06 -0.69 -11.13 16 16 C 0.05 0.87 6.17 -4.98 -0.03 0.84 16 17 C 0.44 10.38 7.82 -10.99 -0.09 10.29 16 18 O -0.58 -15.88 15.78 5.55 0.09 -15.79 16 19 N -0.57 -14.25 5.29 -10.97 -0.06 -14.31 16 20 C -0.30 -8.31 9.68 -14.93 -0.14 -8.46 16 21 H 0.10 3.00 7.16 -52.49 -0.38 2.63 16 22 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 23 N -0.90 -24.47 13.05 55.50 0.72 -23.74 16 24 Si 0.93 21.05 29.55 -169.99 -5.02 16.02 16 25 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 26 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 27 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 28 C 0.01 0.08 4.39 -3.83 -0.02 0.06 16 29 H 0.08 0.46 7.99 -51.93 -0.41 0.05 16 30 H 0.08 0.39 7.57 -51.93 -0.39 -0.01 16 31 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.12 1.16 7.67 -52.49 -0.40 0.76 16 33 H 0.09 0.62 2.91 -51.93 -0.15 0.47 16 34 H 0.08 0.44 6.85 -51.93 -0.36 0.08 16 35 H 0.07 0.40 5.94 -51.93 -0.31 0.10 16 36 H 0.09 0.92 7.06 -51.93 -0.37 0.55 16 37 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.08 0.72 8.01 -51.93 -0.42 0.30 16 39 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.05 0.55 7.41 -51.93 -0.38 0.17 16 42 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.04 0.38 6.72 -51.93 -0.35 0.03 16 44 H 0.35 5.76 8.43 -39.29 -0.33 5.43 16 45 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 46 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 47 H 0.39 9.39 7.90 -40.82 -0.32 9.06 16 48 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 49 H 0.08 0.69 8.12 -51.93 -0.42 0.27 16 50 H 0.14 0.97 2.27 -97.05 -0.22 0.75 16 LS Contribution 391.62 15.07 5.90 5.90 Total: -1.00 -34.62 391.62 -8.15 -42.77 By element: Atomic # 1 Polarization: 20.10 SS G_CDS: -7.71 Total: 12.39 kcal Atomic # 6 Polarization: 8.14 SS G_CDS: -0.84 Total: 7.30 kcal Atomic # 7 Polarization: -55.19 SS G_CDS: -0.41 Total: -55.60 kcal Atomic # 8 Polarization: -28.71 SS G_CDS: -0.08 Total: -28.78 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -34.62 -8.15 -42.77 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200216621.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.488 kcal (2) G-P(sol) polarization free energy of solvation -34.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds