Wall clock time and date at job start Tue Mar 31 2020 23:03:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52997 * 109.47192 * 2 1 4 4 C 1.53001 * 109.47056 * 239.99857 * 2 1 3 5 5 O 1.45197 * 109.46618 * 119.99963 * 2 1 3 6 6 C 1.34637 * 116.99927 * 61.90015 * 5 2 1 7 7 O 1.21507 * 120.00496 * 1.59938 * 6 5 2 8 8 N 1.34781 * 119.99757 * 181.59874 * 6 5 2 9 9 C 1.46499 * 120.00025 * 184.67248 * 8 6 5 10 10 C 1.50700 * 115.54817 * 296.06936 * 9 8 6 11 11 O 1.21285 * 119.99899 * 133.39482 * 10 9 8 12 12 N 1.34777 * 120.00168 * 313.39465 * 10 9 8 13 13 C 1.46965 * 120.59169 * 183.43936 * 12 10 9 14 14 C 1.53370 * 108.63376 * 235.24332 * 13 12 10 15 15 N 1.46964 * 108.63902 * 310.58199 * 14 13 12 16 16 C 1.36933 * 120.59742 * 234.95300 * 15 14 13 17 17 H 1.07995 * 120.00370 * 142.61821 * 16 15 14 18 18 C 1.38820 * 119.99217 * 322.62291 * 16 15 14 19 19 N 1.31621 * 119.99319 * 168.94442 * 18 16 15 20 20 Si 1.86798 * 120.00265 * 348.93866 * 18 16 15 21 21 H 1.48498 * 109.46692 * 90.30945 * 20 18 16 22 22 H 1.48497 * 109.47179 * 210.30700 * 20 18 16 23 23 H 1.48492 * 109.47033 * 330.31132 * 20 18 16 24 24 C 1.46969 * 118.81020 * 55.21918 * 15 14 13 25 25 C 1.46961 * 120.59339 * 3.45761 * 12 10 9 26 26 C 1.53005 * 117.50058 * 81.73713 * 9 8 6 27 27 C 1.53000 * 117.49981 * 150.39791 * 9 8 6 28 28 H 1.08993 * 109.47090 * 302.53108 * 1 2 3 29 29 H 1.09011 * 109.46811 * 62.52180 * 1 2 3 30 30 H 1.08998 * 109.47138 * 182.52051 * 1 2 3 31 31 H 1.09001 * 109.46692 * 184.83518 * 3 2 1 32 32 H 1.09002 * 109.46945 * 304.83227 * 3 2 1 33 33 H 1.08996 * 109.47434 * 64.83332 * 3 2 1 34 34 H 1.09001 * 109.47082 * 306.71672 * 4 2 1 35 35 H 1.09002 * 109.47079 * 66.71920 * 4 2 1 36 36 H 1.08997 * 109.46871 * 186.71810 * 4 2 1 37 37 H 0.97001 * 120.00157 * 4.66958 * 8 6 5 38 38 H 1.08999 * 109.60825 * 115.50410 * 13 12 10 39 39 H 1.08999 * 109.75557 * 355.07251 * 13 12 10 40 40 H 1.08991 * 109.61381 * 190.83356 * 14 13 12 41 41 H 1.09009 * 109.60454 * 70.32161 * 14 13 12 42 42 H 0.97004 * 119.99488 * 179.97438 * 19 18 16 43 43 H 1.08999 * 109.60831 * 64.52316 * 24 15 14 44 44 H 1.09005 * 109.60576 * 185.03122 * 24 15 14 45 45 H 1.08996 * 109.61008 * 244.49773 * 25 12 10 46 46 H 1.09006 * 109.60978 * 4.84105 * 25 12 10 47 47 H 1.08998 * 117.50232 * 215.00707 * 26 9 8 48 48 H 1.08997 * 117.49653 * 0.02562 * 26 9 8 49 49 H 1.08997 * 117.49858 * 359.97438 * 27 9 8 50 50 H 1.09003 * 117.49824 * 144.97291 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 8 2.0139 -0.6845 1.1856 6 6 1.6849 -1.9832 1.3186 7 8 1.0364 -2.5375 0.4533 8 7 2.0748 -2.6686 2.4117 9 6 1.8061 -4.1054 2.5099 10 6 0.3503 -4.4931 2.5487 11 8 -0.0558 -5.3956 1.8475 12 7 -0.5004 -3.8370 3.3626 13 6 -1.9061 -4.2528 3.4669 14 6 -2.7987 -3.0453 3.1547 15 7 -2.3373 -1.9011 3.9532 16 6 -3.2029 -1.2307 4.7756 17 1 -2.8624 -0.8603 5.7312 18 6 -4.5182 -1.0275 4.3809 19 7 -5.4037 -0.5823 5.2470 20 14 -5.0312 -1.3856 2.6208 21 1 -5.4854 -2.7954 2.5148 22 1 -6.1409 -0.4777 2.2342 23 1 -3.8752 -1.1684 1.7144 24 6 -0.9314 -1.4855 3.8488 25 6 -0.0389 -2.6929 4.1612 26 6 2.7713 -5.0550 1.7974 27 6 2.7849 -4.9531 3.3247 28 1 -0.3633 0.5526 0.8664 29 1 -0.3633 0.4742 -0.9118 30 1 -0.3633 -1.0266 0.0452 31 1 3.1266 1.4436 -0.0866 32 1 1.6078 1.9807 -0.8436 33 1 1.7492 1.9307 0.9301 34 1 1.5819 -1.7084 -1.3113 35 1 1.7782 -0.1427 -2.1352 36 1 3.1234 -0.8266 -1.1911 37 1 2.5334 -2.2106 3.1333 38 1 -2.1090 -4.6059 4.4780 39 1 -2.1081 -5.0513 2.7531 40 1 -3.8320 -3.2779 3.4119 41 1 -2.7286 -2.8032 2.0941 42 1 -6.3227 -0.4399 4.9711 43 1 -0.7285 -1.1324 2.8378 44 1 -0.7317 -0.6879 4.5645 45 1 -0.1089 -2.9350 5.2216 46 1 0.9955 -2.4622 3.9061 47 1 2.3534 -5.9601 1.3568 48 1 3.6065 -4.6107 1.2560 49 1 3.6291 -4.4420 3.7874 50 1 2.3759 -5.7911 3.8893 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000127316138.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:40 Heat of formation + Delta-G solvation = -36.213763 kcal Electronic energy + Delta-G solvation = -32925.298013 eV Core-core repulsion = 28762.650975 eV Total energy + Delta-G solvation = -4162.647038 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.12630 -39.98118 -37.89769 -37.04239 -36.17170 -34.33282 -33.98004 -32.66702 -31.47781 -30.73113 -27.50188 -27.45118 -27.35231 -24.75210 -23.69970 -23.12677 -22.85314 -22.05705 -20.46062 -20.13267 -18.94465 -18.28963 -17.51226 -16.52280 -16.42471 -16.07337 -15.74110 -15.62748 -14.93452 -14.67076 -14.55903 -14.39487 -14.24580 -14.17189 -13.72578 -13.56096 -13.18712 -12.86054 -12.58726 -12.44339 -12.42540 -12.16524 -11.97660 -11.95222 -11.89739 -11.81890 -11.62125 -11.39122 -11.26328 -11.11126 -10.96373 -10.78994 -10.44506 -10.38193 -10.25322 -10.05957 -10.02257 -9.97554 -9.61987 -8.98372 -8.73819 -8.32371 -6.84816 -6.00832 -3.50398 1.87959 2.63128 2.79679 3.18181 3.30218 3.45326 3.50376 3.60810 3.91379 4.42243 4.47843 4.55073 4.58748 4.65338 4.70433 4.84675 4.89666 5.13697 5.27299 5.27906 5.37452 5.47556 5.54917 5.56324 5.59123 5.59657 5.64279 5.72884 5.76576 5.84863 5.85562 5.86755 5.93845 6.00122 6.09142 6.15102 6.22859 6.27098 6.40695 6.42620 6.44519 6.54342 6.71506 6.91094 7.23274 7.74117 7.97895 8.29829 8.34078 8.41894 8.86230 9.63677 10.05188 11.14429 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.010246 B = 0.005288 C = 0.004034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2732.088525 B = 5293.868935 C = 6939.546905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.139 3.861 3 C -0.140 4.140 4 C -0.183 4.183 5 O -0.363 6.363 6 C 0.651 3.349 7 O -0.543 6.543 8 N -0.677 5.677 9 C 0.089 3.911 10 C 0.550 3.450 11 O -0.538 6.538 12 N -0.587 5.587 13 C 0.096 3.904 14 C 0.114 3.886 15 N -0.604 5.604 16 C -0.266 4.266 17 H 0.083 0.917 18 C 0.033 3.967 19 N -0.909 5.909 20 Si 0.888 3.112 21 H -0.286 1.286 22 H -0.302 1.302 23 H -0.269 1.269 24 C 0.138 3.862 25 C 0.076 3.924 26 C -0.141 4.141 27 C -0.148 4.148 28 H 0.066 0.934 29 H 0.069 0.931 30 H 0.084 0.916 31 H 0.064 0.936 32 H 0.080 0.920 33 H 0.070 0.930 34 H 0.090 0.910 35 H 0.068 0.932 36 H 0.057 0.943 37 H 0.410 0.590 38 H 0.070 0.930 39 H 0.084 0.916 40 H 0.080 0.920 41 H 0.031 0.969 42 H 0.264 0.736 43 H 0.023 0.977 44 H 0.074 0.926 45 H 0.067 0.933 46 H 0.087 0.913 47 H 0.116 0.884 48 H 0.105 0.895 49 H 0.112 0.888 50 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.552 -1.929 -6.525 21.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.102 3.898 3 C -0.197 4.197 4 C -0.240 4.240 5 O -0.278 6.278 6 C 0.405 3.595 7 O -0.430 6.430 8 N -0.340 5.340 9 C -0.001 4.001 10 C 0.335 3.665 11 O -0.415 6.415 12 N -0.318 5.318 13 C -0.028 4.028 14 C -0.012 4.012 15 N -0.328 5.328 16 C -0.395 4.395 17 H 0.101 0.899 18 C -0.168 4.168 19 N -0.551 5.551 20 Si 0.718 3.282 21 H -0.213 1.213 22 H -0.230 1.230 23 H -0.194 1.194 24 C 0.011 3.989 25 C -0.049 4.049 26 C -0.180 4.180 27 C -0.186 4.186 28 H 0.085 0.915 29 H 0.088 0.912 30 H 0.103 0.897 31 H 0.083 0.917 32 H 0.098 0.902 33 H 0.089 0.911 34 H 0.109 0.891 35 H 0.087 0.913 36 H 0.076 0.924 37 H 0.249 0.751 38 H 0.088 0.912 39 H 0.102 0.898 40 H 0.098 0.902 41 H 0.049 0.951 42 H 0.074 0.926 43 H 0.041 0.959 44 H 0.092 0.908 45 H 0.085 0.915 46 H 0.104 0.896 47 H 0.134 0.866 48 H 0.123 0.877 49 H 0.130 0.870 50 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 19.797 -2.512 -7.358 21.269 hybrid contribution -0.357 0.282 -0.599 0.752 sum 19.440 -2.230 -7.957 21.123 Atomic orbital electron populations 1.22487 0.93499 1.05166 1.02885 1.22087 0.94588 0.91323 0.81769 1.21856 1.01788 0.92581 1.03454 1.22545 1.01418 1.03504 0.96504 1.86275 1.72326 1.22424 1.46760 1.18003 0.78493 0.80740 0.82261 1.90987 1.41059 1.69756 1.41151 1.44120 1.63459 1.06957 1.19488 1.20423 0.91090 0.78368 1.10195 1.19266 0.85621 0.82169 0.79428 1.90663 1.77113 1.31928 1.41794 1.47841 1.10182 1.31237 1.42590 1.22240 0.79928 0.98679 1.01924 1.21750 0.97378 0.87201 0.94880 1.44198 1.06253 1.31429 1.50920 1.18852 0.91175 1.31750 0.97697 0.89908 1.25501 0.96756 0.97269 0.97229 1.69761 1.03046 1.48330 1.34004 0.86857 0.77719 0.76892 0.86731 1.21294 1.22954 1.19364 1.21268 0.85020 0.93738 0.98851 1.22750 0.99420 0.87497 0.95216 1.23364 0.99487 1.00936 0.94192 1.23433 0.99054 1.00668 0.95409 0.91538 0.91179 0.89744 0.91717 0.90168 0.91140 0.89137 0.91326 0.92401 0.75138 0.91161 0.89798 0.90170 0.95103 0.92617 0.95922 0.90779 0.91480 0.89558 0.86580 0.87666 0.87007 0.86873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.63 8.44 37.16 0.31 -2.31 16 2 C 0.14 1.70 1.13 -90.62 -0.10 1.60 16 3 C -0.14 -1.28 8.85 37.16 0.33 -0.95 16 4 C -0.18 -2.10 8.22 37.16 0.31 -1.80 16 5 O -0.36 -4.81 9.94 -40.32 -0.40 -5.22 16 6 C 0.65 9.55 7.92 54.06 0.43 9.98 16 7 O -0.54 -9.81 11.37 -19.28 -0.22 -10.03 16 8 N -0.68 -7.98 3.24 -53.55 -0.17 -8.15 16 9 C 0.09 1.14 1.50 -132.97 -0.20 0.94 16 10 C 0.55 9.60 6.50 -10.99 -0.07 9.53 16 11 O -0.54 -11.08 15.74 5.55 0.09 -10.99 16 12 N -0.59 -10.48 2.95 -172.49 -0.51 -10.99 16 13 C 0.10 1.88 6.59 -3.60 -0.02 1.86 16 14 C 0.11 2.60 4.33 -3.60 -0.02 2.58 16 15 N -0.60 -14.27 2.63 -172.04 -0.45 -14.72 16 16 C -0.27 -7.30 10.00 -15.06 -0.15 -7.45 16 17 H 0.08 2.41 8.06 -52.49 -0.42 1.99 16 18 C 0.03 0.93 5.34 -17.43 -0.09 0.84 16 19 N -0.91 -27.57 13.97 55.49 0.78 -26.80 16 20 Si 0.89 22.85 24.37 -169.99 -4.14 18.71 16 21 H -0.29 -7.14 6.71 56.52 0.38 -6.76 16 22 H -0.30 -7.85 7.11 56.52 0.40 -7.45 16 23 H -0.27 -6.96 6.43 56.52 0.36 -6.60 16 24 C 0.14 2.69 6.67 -3.60 -0.02 2.66 16 25 C 0.08 1.21 6.30 -3.60 -0.02 1.18 16 26 C -0.14 -1.52 9.97 -26.69 -0.27 -1.79 16 27 C -0.15 -1.28 10.16 -26.69 -0.27 -1.55 16 28 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 29 H 0.07 0.86 8.14 -51.92 -0.42 0.44 16 30 H 0.08 1.50 6.03 -51.93 -0.31 1.19 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.09 1.29 5.91 -51.93 -0.31 0.99 16 35 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 37 H 0.41 3.55 8.02 -40.82 -0.33 3.22 16 38 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 39 H 0.08 1.64 7.00 -51.93 -0.36 1.28 16 40 H 0.08 1.93 5.02 -51.93 -0.26 1.67 16 41 H 0.03 0.75 6.86 -51.92 -0.36 0.39 16 42 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 43 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.07 1.38 7.93 -51.93 -0.41 0.97 16 45 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 46 H 0.09 1.10 3.77 -51.93 -0.20 0.90 16 47 H 0.12 1.39 7.72 -51.93 -0.40 0.99 16 48 H 0.10 0.99 8.14 -51.93 -0.42 0.56 16 49 H 0.11 0.65 8.14 -51.93 -0.42 0.22 16 50 H 0.11 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 386.86 15.07 5.83 5.83 Total: -1.00 -35.01 386.86 -7.12 -42.13 By element: Atomic # 1 Polarization: 12.95 SS G_CDS: -8.05 Total: 4.90 kcal Atomic # 6 Polarization: 15.19 SS G_CDS: 0.14 Total: 15.32 kcal Atomic # 7 Polarization: -60.30 SS G_CDS: -0.36 Total: -60.66 kcal Atomic # 8 Polarization: -25.70 SS G_CDS: -0.53 Total: -26.23 kcal Atomic # 14 Polarization: 22.85 SS G_CDS: -4.14 Total: 18.71 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -35.01 -7.12 -42.13 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127316138.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.912 kcal (2) G-P(sol) polarization free energy of solvation -35.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds