Wall clock time and date at job start Tue Mar 31 2020 23:03:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52997 * 109.47192 * 2 1 4 4 C 1.53001 * 109.47056 * 239.99857 * 2 1 3 5 5 O 1.45197 * 109.46618 * 119.99963 * 2 1 3 6 6 C 1.34637 * 116.99927 * 61.90015 * 5 2 1 7 7 O 1.21507 * 120.00496 * 1.59938 * 6 5 2 8 8 N 1.34781 * 119.99757 * 181.59874 * 6 5 2 9 9 C 1.46499 * 120.00025 * 184.67248 * 8 6 5 10 10 C 1.50700 * 115.54817 * 296.06936 * 9 8 6 11 11 O 1.21285 * 119.99899 * 133.39482 * 10 9 8 12 12 N 1.34777 * 120.00168 * 313.39465 * 10 9 8 13 13 C 1.46965 * 120.59169 * 183.43936 * 12 10 9 14 14 C 1.53370 * 108.63376 * 235.24332 * 13 12 10 15 15 N 1.46964 * 108.63902 * 310.58199 * 14 13 12 16 16 C 1.36933 * 120.59742 * 234.95300 * 15 14 13 17 17 H 1.07995 * 120.00370 * 142.61821 * 16 15 14 18 18 C 1.38820 * 119.99217 * 322.62291 * 16 15 14 19 19 N 1.31621 * 119.99319 * 168.94442 * 18 16 15 20 20 Si 1.86798 * 120.00265 * 348.93866 * 18 16 15 21 21 H 1.48498 * 109.46692 * 90.30945 * 20 18 16 22 22 H 1.48497 * 109.47179 * 210.30700 * 20 18 16 23 23 H 1.48492 * 109.47033 * 330.31132 * 20 18 16 24 24 C 1.46969 * 118.81020 * 55.21918 * 15 14 13 25 25 C 1.46961 * 120.59339 * 3.45761 * 12 10 9 26 26 C 1.53005 * 117.50058 * 81.73713 * 9 8 6 27 27 C 1.53000 * 117.49981 * 150.39791 * 9 8 6 28 28 H 1.08993 * 109.47090 * 302.53108 * 1 2 3 29 29 H 1.09011 * 109.46811 * 62.52180 * 1 2 3 30 30 H 1.08998 * 109.47138 * 182.52051 * 1 2 3 31 31 H 1.09001 * 109.46692 * 184.83518 * 3 2 1 32 32 H 1.09002 * 109.46945 * 304.83227 * 3 2 1 33 33 H 1.08996 * 109.47434 * 64.83332 * 3 2 1 34 34 H 1.09001 * 109.47082 * 306.71672 * 4 2 1 35 35 H 1.09002 * 109.47079 * 66.71920 * 4 2 1 36 36 H 1.08997 * 109.46871 * 186.71810 * 4 2 1 37 37 H 0.97001 * 120.00157 * 4.66958 * 8 6 5 38 38 H 1.08999 * 109.60825 * 115.50410 * 13 12 10 39 39 H 1.08999 * 109.75557 * 355.07251 * 13 12 10 40 40 H 1.08991 * 109.61381 * 190.83356 * 14 13 12 41 41 H 1.09009 * 109.60454 * 70.32161 * 14 13 12 42 42 H 0.97004 * 119.99488 * 179.97438 * 19 18 16 43 43 H 1.08999 * 109.60831 * 64.52316 * 24 15 14 44 44 H 1.09005 * 109.60576 * 185.03122 * 24 15 14 45 45 H 1.08996 * 109.61008 * 244.49773 * 25 12 10 46 46 H 1.09006 * 109.60978 * 4.84105 * 25 12 10 47 47 H 1.08998 * 117.50232 * 215.00707 * 26 9 8 48 48 H 1.08997 * 117.49653 * 0.02562 * 26 9 8 49 49 H 1.08997 * 117.49858 * 359.97438 * 27 9 8 50 50 H 1.09003 * 117.49824 * 144.97291 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 8 2.0139 -0.6845 1.1856 6 6 1.6849 -1.9832 1.3186 7 8 1.0364 -2.5375 0.4533 8 7 2.0748 -2.6686 2.4117 9 6 1.8061 -4.1054 2.5099 10 6 0.3503 -4.4931 2.5487 11 8 -0.0558 -5.3956 1.8475 12 7 -0.5004 -3.8370 3.3626 13 6 -1.9061 -4.2528 3.4669 14 6 -2.7987 -3.0453 3.1547 15 7 -2.3373 -1.9011 3.9532 16 6 -3.2029 -1.2307 4.7756 17 1 -2.8624 -0.8603 5.7312 18 6 -4.5182 -1.0275 4.3809 19 7 -5.4037 -0.5823 5.2470 20 14 -5.0312 -1.3856 2.6208 21 1 -5.4854 -2.7954 2.5148 22 1 -6.1409 -0.4777 2.2342 23 1 -3.8752 -1.1684 1.7144 24 6 -0.9314 -1.4855 3.8488 25 6 -0.0389 -2.6929 4.1612 26 6 2.7713 -5.0550 1.7974 27 6 2.7849 -4.9531 3.3247 28 1 -0.3633 0.5526 0.8664 29 1 -0.3633 0.4742 -0.9118 30 1 -0.3633 -1.0266 0.0452 31 1 3.1266 1.4436 -0.0866 32 1 1.6078 1.9807 -0.8436 33 1 1.7492 1.9307 0.9301 34 1 1.5819 -1.7084 -1.3113 35 1 1.7782 -0.1427 -2.1352 36 1 3.1234 -0.8266 -1.1911 37 1 2.5334 -2.2106 3.1333 38 1 -2.1090 -4.6059 4.4780 39 1 -2.1081 -5.0513 2.7531 40 1 -3.8320 -3.2779 3.4119 41 1 -2.7286 -2.8032 2.0941 42 1 -6.3227 -0.4399 4.9711 43 1 -0.7285 -1.1324 2.8378 44 1 -0.7317 -0.6879 4.5645 45 1 -0.1089 -2.9350 5.2216 46 1 0.9955 -2.4622 3.9061 47 1 2.3534 -5.9601 1.3568 48 1 3.6065 -4.6107 1.2560 49 1 3.6291 -4.4420 3.7874 50 1 2.3759 -5.7911 3.8893 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000127316138.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:39 Heat of formation + Delta-G solvation = -61.004699 kcal Electronic energy + Delta-G solvation = -32926.373029 eV Core-core repulsion = 28762.650975 eV Total energy + Delta-G solvation = -4163.722053 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.24840 -41.19941 -39.21753 -38.43932 -37.30219 -35.80783 -35.27221 -33.74436 -33.48282 -32.32997 -29.17737 -28.42725 -28.30031 -26.17741 -25.37947 -24.46587 -23.76056 -23.38616 -21.97527 -21.16667 -20.32246 -19.34361 -19.03556 -18.18266 -17.54480 -17.41777 -17.12365 -16.90563 -16.49488 -16.09094 -15.95880 -15.73912 -15.59778 -15.31082 -15.25589 -14.75249 -14.60638 -14.29588 -14.23448 -14.00609 -13.61738 -13.36647 -13.31797 -13.01615 -12.92820 -12.85251 -12.70123 -12.55902 -12.53893 -12.41063 -12.36599 -12.19182 -12.06010 -11.92376 -11.86306 -11.71873 -11.41643 -11.17437 -11.13451 -10.92038 -10.07773 -9.92927 -8.80805 -8.25003 -5.70177 0.85965 1.20171 1.30841 1.39428 1.44038 1.67040 1.88737 2.31001 2.67422 2.95614 3.03133 3.18429 3.31688 3.63454 3.71706 3.76545 3.77186 3.91343 3.99892 4.03165 4.20302 4.29151 4.34041 4.44633 4.47909 4.53239 4.55292 4.60891 4.65068 4.72075 4.72488 4.77798 4.81477 4.82898 4.87073 4.89895 5.02242 5.07256 5.12109 5.19351 5.23708 5.32159 5.42375 5.52716 5.84407 6.08700 6.24651 6.39676 6.80649 7.04439 7.30330 7.48250 7.95531 8.93870 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.010246 B = 0.005288 C = 0.004034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2732.088525 B = 5293.868935 C = 6939.546905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.133 3.867 3 C -0.134 4.134 4 C -0.176 4.176 5 O -0.359 6.359 6 C 0.646 3.354 7 O -0.581 6.581 8 N -0.659 5.659 9 C 0.060 3.940 10 C 0.544 3.456 11 O -0.578 6.578 12 N -0.594 5.594 13 C 0.105 3.895 14 C 0.116 3.884 15 N -0.614 5.614 16 C -0.248 4.248 17 H 0.064 0.936 18 C -0.014 4.014 19 N -0.949 5.949 20 Si 0.938 3.062 21 H -0.277 1.277 22 H -0.304 1.304 23 H -0.277 1.277 24 C 0.135 3.865 25 C 0.087 3.913 26 C -0.143 4.143 27 C -0.103 4.103 28 H 0.053 0.947 29 H 0.086 0.914 30 H 0.044 0.956 31 H 0.081 0.919 32 H 0.097 0.903 33 H 0.067 0.933 34 H 0.058 0.942 35 H 0.088 0.912 36 H 0.070 0.930 37 H 0.428 0.572 38 H 0.081 0.919 39 H 0.080 0.920 40 H 0.064 0.936 41 H 0.011 0.989 42 H 0.264 0.736 43 H 0.011 0.989 44 H 0.083 0.917 45 H 0.081 0.919 46 H 0.122 0.878 47 H 0.097 0.903 48 H 0.122 0.878 49 H 0.155 0.845 50 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.125 -1.756 -6.360 25.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.096 3.904 3 C -0.190 4.190 4 C -0.233 4.233 5 O -0.273 6.273 6 C 0.400 3.600 7 O -0.470 6.470 8 N -0.324 5.324 9 C -0.030 4.030 10 C 0.332 3.668 11 O -0.457 6.457 12 N -0.325 5.325 13 C -0.020 4.020 14 C -0.010 4.010 15 N -0.339 5.339 16 C -0.378 4.378 17 H 0.081 0.919 18 C -0.211 4.211 19 N -0.594 5.594 20 Si 0.768 3.232 21 H -0.204 1.204 22 H -0.232 1.232 23 H -0.203 1.203 24 C 0.010 3.990 25 C -0.037 4.037 26 C -0.182 4.182 27 C -0.140 4.140 28 H 0.072 0.928 29 H 0.105 0.895 30 H 0.063 0.937 31 H 0.100 0.900 32 H 0.116 0.884 33 H 0.086 0.914 34 H 0.077 0.923 35 H 0.106 0.894 36 H 0.089 0.911 37 H 0.270 0.730 38 H 0.099 0.901 39 H 0.099 0.901 40 H 0.083 0.917 41 H 0.029 0.971 42 H 0.073 0.927 43 H 0.029 0.971 44 H 0.101 0.899 45 H 0.099 0.901 46 H 0.140 0.860 47 H 0.115 0.885 48 H 0.140 0.860 49 H 0.173 0.827 50 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 23.434 -2.331 -7.171 24.618 hybrid contribution -1.425 0.220 -0.680 1.595 sum 22.009 -2.111 -7.851 23.462 Atomic orbital electron populations 1.22439 0.95640 1.02428 1.03174 1.22332 0.93016 0.93183 0.81849 1.21874 1.02927 0.90086 1.04159 1.22464 1.01866 1.01968 0.97000 1.86293 1.72025 1.21714 1.47296 1.18313 0.78134 0.81056 0.82512 1.90990 1.42732 1.70552 1.42751 1.43965 1.62687 1.06640 1.19087 1.20326 0.88804 0.79176 1.14706 1.20098 0.87497 0.81282 0.77968 1.90636 1.78355 1.33738 1.42967 1.47960 1.09474 1.31893 1.43184 1.21964 0.80905 0.96799 1.02330 1.21613 0.97495 0.88372 0.93474 1.44308 1.07496 1.31708 1.50423 1.18820 0.91470 1.30267 0.97214 0.91887 1.25976 0.97173 0.98218 0.99693 1.69853 1.03409 1.50758 1.35397 0.86041 0.76839 0.77045 0.83257 1.20368 1.23205 1.20267 1.21425 0.83232 0.95875 0.98478 1.22752 1.00146 0.85061 0.95700 1.23420 0.98851 0.99458 0.96447 1.23691 0.97612 0.98861 0.93862 0.92821 0.89471 0.93696 0.89969 0.88393 0.91370 0.92313 0.89352 0.91069 0.72989 0.90062 0.90149 0.91738 0.97102 0.92692 0.97106 0.89873 0.90117 0.86037 0.88482 0.85993 0.82747 0.86333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.18 8.44 71.98 0.61 -4.58 16 2 C 0.13 3.06 1.13 -10.79 -0.01 3.05 16 3 C -0.13 -2.08 8.85 71.98 0.64 -1.44 16 4 C -0.18 -3.81 8.22 71.98 0.59 -3.22 16 5 O -0.36 -8.92 9.94 -55.46 -0.55 -9.47 16 6 C 0.65 18.15 7.92 129.79 1.03 19.18 16 7 O -0.58 -21.22 11.37 19.82 0.23 -20.99 16 8 N -0.66 -13.69 3.24 -553.75 -1.80 -15.49 16 9 C 0.06 1.38 1.50 2.86 0.00 1.38 16 10 C 0.54 18.47 6.50 87.66 0.57 19.04 16 11 O -0.58 -23.98 15.74 -3.05 -0.05 -24.03 16 12 N -0.59 -20.61 2.95 -818.02 -2.41 -23.02 16 13 C 0.10 4.09 6.59 86.41 0.57 4.66 16 14 C 0.12 5.39 4.33 86.42 0.37 5.76 16 15 N -0.61 -29.17 2.63 -698.20 -1.84 -31.01 16 16 C -0.25 -13.77 10.00 84.04 0.84 -12.93 16 17 H 0.06 3.73 8.06 -2.91 -0.02 3.71 16 18 C -0.01 -0.82 5.34 84.86 0.45 -0.37 16 19 N -0.95 -58.73 13.97 21.65 0.30 -58.42 16 20 Si 0.94 48.58 24.37 68.60 1.67 50.25 16 21 H -0.28 -13.79 6.71 99.48 0.67 -13.13 16 22 H -0.30 -15.72 7.11 99.48 0.71 -15.01 16 23 H -0.28 -14.56 6.43 99.48 0.64 -13.92 16 24 C 0.14 5.17 6.67 86.41 0.58 5.74 16 25 C 0.09 2.58 6.30 86.42 0.54 3.12 16 26 C -0.14 -2.71 9.97 30.62 0.31 -2.41 16 27 C -0.10 -1.30 10.16 30.62 0.31 -0.99 16 28 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 29 H 0.09 2.12 8.14 -2.38 -0.02 2.10 16 30 H 0.04 1.66 6.03 -2.39 -0.01 1.65 16 31 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.06 1.69 5.91 -2.39 -0.01 1.68 16 35 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.43 5.59 8.02 -92.71 -0.74 4.84 16 38 H 0.08 2.98 8.14 -2.39 -0.02 2.96 16 39 H 0.08 3.20 7.00 -2.39 -0.02 3.18 16 40 H 0.06 3.16 5.02 -2.39 -0.01 3.15 16 41 H 0.01 0.55 6.86 -2.38 -0.02 0.53 16 42 H 0.26 15.59 8.31 -92.71 -0.77 14.82 16 43 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 44 H 0.08 3.00 7.93 -2.38 -0.02 2.99 16 45 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 46 H 0.12 2.69 3.77 -2.38 -0.01 2.68 16 47 H 0.10 2.24 7.72 -2.39 -0.02 2.22 16 48 H 0.12 1.89 8.14 -2.39 -0.02 1.87 16 49 H 0.15 0.72 8.14 -2.39 -0.02 0.70 16 50 H 0.12 1.48 8.14 -2.39 -0.02 1.46 16 Total: -1.00 -80.43 386.86 3.06 -77.37 By element: Atomic # 1 Polarization: 18.71 SS G_CDS: 0.10 Total: 18.82 kcal Atomic # 6 Polarization: 28.60 SS G_CDS: 7.40 Total: 36.00 kcal Atomic # 7 Polarization: -122.20 SS G_CDS: -5.74 Total: -127.94 kcal Atomic # 8 Polarization: -54.12 SS G_CDS: -0.37 Total: -54.49 kcal Atomic # 14 Polarization: 48.58 SS G_CDS: 1.67 Total: 50.25 kcal Total: -80.43 3.06 -77.37 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127316138.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.366 kcal (2) G-P(sol) polarization free energy of solvation -80.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds