Wall clock time and date at job start Tue Mar 31 2020 22:32:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42898 * 113.99773 * 2 1 4 4 C 1.53001 * 109.47111 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.46768 * 65.00417 * 4 3 2 6 6 C 1.46498 * 120.00052 * 269.99832 * 5 4 3 7 7 C 1.50701 * 109.47543 * 274.20451 * 6 5 4 8 8 H 1.08004 * 119.99496 * 4.92072 * 7 6 5 9 9 C 1.37871 * 120.00420 * 184.92722 * 7 6 5 10 10 N 1.31518 * 120.00179 * 5.08829 * 9 7 6 11 11 Si 1.86803 * 120.00060 * 185.08976 * 9 7 6 12 12 H 1.48500 * 109.46839 * 89.99734 * 11 9 7 13 13 H 1.48500 * 109.47056 * 209.99685 * 11 9 7 14 14 H 1.48501 * 109.47136 * 329.99813 * 11 9 7 15 15 C 1.34775 * 120.00193 * 89.99928 * 5 4 3 16 16 O 1.21658 * 119.99964 * 5.06370 * 15 5 4 17 17 C 1.46737 * 120.00281 * 185.06381 * 15 5 4 18 18 N 1.29689 * 119.54842 * 275.70975 * 17 15 5 19 19 N 1.39862 * 121.13965 * 180.38436 * 18 17 15 20 20 C 1.46504 * 119.79400 * 199.14597 * 19 18 17 21 21 C 1.52998 * 109.47142 * 266.36953 * 20 19 18 22 22 C 1.53000 * 109.46812 * 63.29132 * 21 20 19 23 23 C 1.53000 * 109.47163 * 183.28964 * 21 20 19 24 24 C 1.34745 * 120.40509 * 19.17040 * 19 18 17 25 25 O 1.21256 * 120.12149 * 179.75592 * 24 19 18 26 26 C 1.50773 * 119.75781 * 359.72507 * 24 19 18 27 27 C 1.50541 * 119.54612 * 95.97689 * 17 15 5 28 28 H 1.08996 * 109.46962 * 179.97438 * 1 2 3 29 29 H 1.09008 * 109.47103 * 299.99660 * 1 2 3 30 30 H 1.08994 * 109.47590 * 59.99672 * 1 2 3 31 31 H 1.09008 * 109.47374 * 60.00753 * 3 2 1 32 32 H 1.09003 * 109.47439 * 300.00309 * 3 2 1 33 33 H 1.08997 * 109.47491 * 305.00586 * 4 3 2 34 34 H 1.09001 * 109.47231 * 184.99879 * 4 3 2 35 35 H 1.08998 * 109.47272 * 34.20317 * 6 5 4 36 36 H 1.09001 * 109.47228 * 154.20073 * 6 5 4 37 37 H 0.96990 * 120.00260 * 185.00721 * 10 9 7 38 38 H 1.09000 * 109.47079 * 26.37415 * 20 19 18 39 39 H 1.09001 * 109.46700 * 146.37577 * 20 19 18 40 40 H 1.09002 * 109.47238 * 303.29692 * 21 20 19 41 41 H 1.09002 * 109.47166 * 174.62841 * 22 21 20 42 42 H 1.08993 * 109.47326 * 294.62830 * 22 21 20 43 43 H 1.09004 * 109.47351 * 54.63043 * 22 21 20 44 44 H 1.09005 * 109.46913 * 60.00503 * 23 21 20 45 45 H 1.08997 * 109.47389 * 180.02562 * 23 21 20 46 46 H 1.08997 * 109.46928 * 300.00466 * 23 21 20 47 47 H 1.08994 * 109.51733 * 206.82696 * 26 24 19 48 48 H 1.08994 * 109.51108 * 86.66402 * 26 24 19 49 49 H 1.09001 * 109.44966 * 265.59017 * 27 17 15 50 50 H 1.09005 * 109.45107 * 25.50676 * 27 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9766 0.5641 -1.2509 6 6 4.1062 -0.8924 -1.3405 7 6 5.4672 -1.3071 -0.8435 8 1 6.1356 -0.5709 -0.4221 9 6 5.8590 -2.6263 -0.9270 10 7 5.0879 -3.5045 -1.5301 11 14 7.4854 -3.1664 -0.1835 12 1 7.2722 -3.5776 1.2275 13 1 8.0268 -4.3128 -0.9568 14 1 8.4499 -2.0383 -0.2300 15 6 4.2632 1.3331 -2.3200 16 8 4.2449 2.5454 -2.2198 17 6 4.5973 0.7082 -3.6049 18 7 5.8158 0.3270 -3.8331 19 7 6.1727 -0.2649 -5.0490 20 6 7.4034 -1.0544 -5.1407 21 6 8.5480 -0.1606 -5.6225 22 6 8.8051 0.9393 -4.5905 23 6 9.8137 -1.0024 -5.7968 24 6 5.3919 -0.1132 -6.1366 25 8 5.7086 -0.6249 -7.1893 26 6 4.1226 0.6948 -6.0397 27 6 3.5224 0.5238 -4.6426 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 1.6886 1.8464 0.8901 32 1 1.6885 1.8464 -0.8900 33 1 3.8508 0.5685 0.8426 34 1 3.9784 2.1766 0.0902 35 1 3.3370 -1.3639 -0.7289 36 1 3.9876 -1.2046 -2.3780 37 1 5.3277 -4.4443 -1.5259 38 1 7.6482 -1.4610 -4.1594 39 1 7.2589 -1.8719 -5.8471 40 1 8.2784 0.2923 -6.5766 41 1 9.6805 1.5175 -4.8862 42 1 7.9372 1.5963 -4.5358 43 1 8.9809 0.4876 -3.6141 44 1 9.6304 -1.7860 -6.5321 45 1 10.6292 -0.3656 -6.1396 46 1 10.0831 -1.4552 -4.8427 47 1 3.4105 0.3452 -6.7871 48 1 4.3468 1.7472 -6.2133 49 1 3.0964 -0.4753 -4.5504 50 1 2.7397 1.2671 -4.4904 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000127320288.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:44 Heat of formation + Delta-G solvation = -99.515207 kcal Electronic energy + Delta-G solvation = -31922.795145 eV Core-core repulsion = 27757.403151 eV Total energy + Delta-G solvation = -4165.391994 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.89118 -40.81653 -38.75171 -38.11392 -37.33658 -36.67606 -34.55234 -34.12905 -32.55529 -31.18346 -29.03093 -28.36796 -28.03481 -27.10741 -25.85674 -25.14795 -24.66130 -23.50227 -21.59845 -20.73694 -19.04694 -18.83233 -18.33935 -17.95246 -17.72263 -17.29825 -17.00022 -16.86625 -16.48331 -16.21706 -16.01653 -15.74152 -15.58268 -15.20640 -14.84857 -14.66055 -14.34570 -14.19267 -13.84297 -13.64050 -13.58798 -13.46904 -13.27848 -13.16966 -13.04186 -12.96911 -12.77496 -12.71370 -12.61708 -12.52359 -12.16610 -12.11957 -11.99650 -11.91246 -11.82931 -11.68406 -11.66067 -11.10138 -10.62161 -10.56230 -10.45359 -9.68428 -9.52371 -8.15323 -6.24915 0.33891 0.97788 1.39085 1.42125 1.50288 1.50657 1.64572 2.18899 2.44101 2.97385 3.00150 3.17289 3.45367 3.52286 3.76406 3.85500 3.94280 4.02418 4.11144 4.19843 4.22183 4.30199 4.46236 4.49252 4.51507 4.59747 4.61912 4.62378 4.65937 4.72532 4.74801 4.75932 4.90415 4.91696 4.93446 4.95594 5.01629 5.06318 5.11233 5.22208 5.32991 5.37310 5.39210 5.65624 5.82809 6.11408 6.32637 6.47608 6.59218 6.82789 6.96938 7.09733 7.43909 8.90876 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.009075 B = 0.005127 C = 0.003900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3084.626159 B = 5459.777918 C = 7178.506071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.410 6.410 3 C 0.054 3.946 4 C 0.113 3.887 5 N -0.570 5.570 6 C 0.263 3.737 7 C -0.526 4.526 8 H 0.050 0.950 9 C 0.028 3.972 10 N -0.918 5.918 11 Si 0.940 3.060 12 H -0.274 1.274 13 H -0.286 1.286 14 H -0.271 1.271 15 C 0.582 3.418 16 O -0.571 6.571 17 C 0.086 3.914 18 N -0.209 5.209 19 N -0.454 5.454 20 C 0.139 3.861 21 C -0.101 4.101 22 C -0.132 4.132 23 C -0.138 4.138 24 C 0.485 3.515 25 O -0.557 6.557 26 C -0.129 4.129 27 C -0.103 4.103 28 H 0.085 0.915 29 H 0.056 0.944 30 H 0.046 0.954 31 H 0.085 0.915 32 H 0.050 0.950 33 H 0.085 0.915 34 H 0.100 0.900 35 H 0.033 0.967 36 H 0.019 0.981 37 H 0.263 0.737 38 H 0.075 0.925 39 H 0.083 0.917 40 H 0.065 0.935 41 H 0.070 0.930 42 H 0.037 0.963 43 H 0.046 0.954 44 H 0.061 0.939 45 H 0.076 0.924 46 H 0.057 0.943 47 H 0.142 0.858 48 H 0.123 0.877 49 H 0.099 0.901 50 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.195 8.250 -3.422 9.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.330 6.330 3 C -0.023 4.023 4 C -0.010 4.010 5 N -0.299 5.299 6 C 0.143 3.857 7 C -0.565 4.565 8 H 0.068 0.932 9 C -0.172 4.172 10 N -0.558 5.558 11 Si 0.766 3.234 12 H -0.199 1.199 13 H -0.211 1.211 14 H -0.196 1.196 15 C 0.366 3.634 16 O -0.451 6.451 17 C -0.111 4.111 18 N -0.017 5.017 19 N -0.273 5.273 20 C 0.017 3.983 21 C -0.120 4.120 22 C -0.189 4.189 23 C -0.196 4.196 24 C 0.275 3.725 25 O -0.434 6.434 26 C -0.169 4.169 27 C -0.142 4.142 28 H 0.104 0.896 29 H 0.075 0.925 30 H 0.065 0.935 31 H 0.103 0.897 32 H 0.068 0.932 33 H 0.104 0.896 34 H 0.118 0.882 35 H 0.051 0.949 36 H 0.037 0.963 37 H 0.072 0.928 38 H 0.093 0.907 39 H 0.101 0.899 40 H 0.083 0.917 41 H 0.089 0.911 42 H 0.056 0.944 43 H 0.065 0.935 44 H 0.080 0.920 45 H 0.095 0.905 46 H 0.076 0.924 47 H 0.160 0.840 48 H 0.141 0.859 49 H 0.117 0.883 50 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -2.971 8.110 -3.753 9.417 hybrid contribution -0.008 -0.656 0.150 0.673 sum -2.978 7.453 -3.603 8.798 Atomic orbital electron populations 1.22864 0.79976 1.03224 1.00769 1.88011 1.21133 1.28303 1.95521 1.22959 0.92919 0.84873 1.01531 1.21661 0.93364 0.99838 0.86123 1.48098 1.62075 1.09170 1.10555 1.19044 0.95990 0.73784 0.96918 1.21556 1.00993 0.93704 1.40225 0.93198 1.25437 0.99688 0.96861 0.95171 1.70009 1.40455 1.02479 1.42873 0.85823 0.80969 0.77851 0.78752 1.19934 1.21147 1.19611 1.17421 0.77009 0.85827 0.83116 1.90752 1.55964 1.13718 1.84642 1.24541 0.92656 0.97069 0.96853 1.74978 1.18231 1.06422 1.02057 1.49107 1.23558 1.49478 1.05141 1.21647 0.81499 0.92897 1.02234 1.21397 0.95087 0.96657 0.98896 1.21681 1.01014 0.97913 0.98327 1.21732 0.95855 0.99833 1.02189 1.21889 0.86360 0.81109 0.83147 1.90663 1.74289 1.49503 1.28926 1.21867 0.93862 1.02422 0.98728 1.21044 0.96900 1.06023 0.90280 0.89598 0.92548 0.93526 0.89708 0.93210 0.89614 0.88151 0.94942 0.96254 0.92800 0.90671 0.89914 0.91697 0.91143 0.94425 0.93479 0.92021 0.90526 0.92436 0.84045 0.85870 0.88294 0.85281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.61 11.01 113.37 1.25 1.86 16 2 O -0.41 -12.81 9.46 -148.98 -1.41 -14.22 16 3 C 0.05 1.49 6.28 71.98 0.45 1.94 16 4 C 0.11 3.73 5.87 86.38 0.51 4.24 16 5 N -0.57 -22.70 2.42 -830.84 -2.01 -24.72 16 6 C 0.26 12.37 4.96 85.63 0.42 12.80 16 7 C -0.53 -27.24 9.38 25.60 0.24 -27.00 16 8 H 0.05 2.65 7.82 -2.91 -0.02 2.63 16 9 C 0.03 1.50 5.45 84.65 0.46 1.96 16 10 N -0.92 -50.98 13.28 21.45 0.28 -50.69 16 11 Si 0.94 42.55 29.54 68.60 2.03 44.58 16 12 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 13 H -0.29 -12.83 7.11 99.48 0.71 -12.12 16 14 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 15 C 0.58 22.85 7.23 86.46 0.62 23.47 16 16 O -0.57 -23.31 16.66 -4.22 -0.07 -23.38 16 17 C 0.09 3.16 4.53 45.05 0.20 3.36 16 18 N -0.21 -8.38 10.46 -43.50 -0.46 -8.83 16 19 N -0.45 -16.95 3.07 -463.04 -1.42 -18.37 16 20 C 0.14 4.92 5.05 86.38 0.44 5.35 16 21 C -0.10 -2.97 3.12 -10.79 -0.03 -3.01 16 22 C -0.13 -3.97 8.78 71.98 0.63 -3.33 16 23 C -0.14 -3.30 9.19 71.98 0.66 -2.64 16 24 C 0.49 16.74 7.53 87.68 0.66 17.40 16 25 O -0.56 -21.46 16.73 -2.96 -0.05 -21.51 16 26 C -0.13 -3.25 6.20 29.88 0.19 -3.07 16 27 C -0.10 -2.84 6.01 29.80 0.18 -2.66 16 28 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 29 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 30 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.08 1.77 8.14 -2.38 -0.02 1.75 16 32 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.09 2.94 8.07 -2.39 -0.02 2.92 16 34 H 0.10 3.12 7.36 -2.39 -0.02 3.11 16 35 H 0.03 1.64 7.05 -2.39 -0.02 1.62 16 36 H 0.02 0.98 6.63 -2.39 -0.02 0.96 16 37 H 0.26 14.03 8.32 -92.72 -0.77 13.26 16 38 H 0.07 2.93 8.14 -2.39 -0.02 2.92 16 39 H 0.08 2.93 7.53 -2.39 -0.02 2.92 16 40 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 41 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 42 H 0.04 1.26 7.28 -2.39 -0.02 1.24 16 43 H 0.05 1.52 8.14 -2.38 -0.02 1.51 16 44 H 0.06 1.40 8.14 -2.38 -0.02 1.38 16 45 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 46 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 47 H 0.14 2.79 8.14 -2.39 -0.02 2.77 16 48 H 0.12 2.66 8.14 -2.39 -0.02 2.64 16 49 H 0.10 2.84 8.14 -2.39 -0.02 2.82 16 50 H 0.13 2.83 8.07 -2.38 -0.02 2.81 16 Total: -1.00 -67.31 413.80 4.69 -62.62 By element: Atomic # 1 Polarization: 22.95 SS G_CDS: 0.91 Total: 23.86 kcal Atomic # 6 Polarization: 23.78 SS G_CDS: 6.88 Total: 30.66 kcal Atomic # 7 Polarization: -99.00 SS G_CDS: -3.60 Total: -102.61 kcal Atomic # 8 Polarization: -57.59 SS G_CDS: -1.53 Total: -59.12 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.58 kcal Total: -67.31 4.69 -62.62 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127320288.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.895 kcal (2) G-P(sol) polarization free energy of solvation -67.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds