Wall clock time and date at job start Tue Mar 31 2020 22:32:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 109.47037 * 2 1 4 4 C 1.53000 * 109.46825 * 119.99628 * 2 1 3 5 5 N 1.46499 * 109.46937 * 172.39802 * 4 2 1 6 6 C 1.45652 * 117.70720 * 277.17095 * 5 4 2 7 7 C 1.52988 * 110.73725 * 158.07614 * 6 5 4 8 8 N 1.47270 * 108.18835 * 46.74980 * 7 6 5 9 9 C 1.34773 * 121.35123 * 118.47521 * 8 7 6 10 10 O 1.21349 * 120.00336 * 353.26043 * 9 8 7 11 11 C 1.49457 * 119.99492 * 173.26546 * 9 8 7 12 12 O 1.21350 * 120.00129 * 354.37932 * 11 9 8 13 13 N 1.34781 * 119.99734 * 174.38258 * 11 9 8 14 14 C 1.46496 * 120.00058 * 179.97438 * 13 11 9 15 15 C 1.52996 * 109.47277 * 179.97438 * 14 13 11 16 16 C 1.52993 * 109.47389 * 179.97438 * 15 14 13 17 17 C 1.50704 * 109.47524 * 180.02562 * 16 15 14 18 18 H 1.07999 * 119.99829 * 359.97438 * 17 16 15 19 19 C 1.37870 * 119.99993 * 180.02562 * 17 16 15 20 20 N 1.31516 * 120.00243 * 359.97438 * 19 17 16 21 21 Si 1.86808 * 119.99778 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47054 * 59.99780 * 21 19 17 23 23 H 1.48500 * 109.47011 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.47013 * 299.99878 * 21 19 17 25 25 C 1.47046 * 117.29294 * 298.49556 * 8 7 6 26 26 C 1.33335 * 117.66575 * 97.21694 * 5 4 2 27 27 O 1.21278 * 118.50015 * 4.29436 * 26 5 4 28 28 H 1.09003 * 109.47063 * 300.00132 * 1 2 3 29 29 H 1.08996 * 109.46833 * 60.00065 * 1 2 3 30 30 H 1.08998 * 109.47421 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.46713 * 239.99391 * 2 1 3 32 32 H 1.08996 * 109.47008 * 307.18710 * 3 2 1 33 33 H 1.09000 * 109.47378 * 67.18896 * 3 2 1 34 34 H 1.09001 * 109.46948 * 187.18966 * 3 2 1 35 35 H 1.09010 * 109.47012 * 52.40618 * 4 2 1 36 36 H 1.08996 * 109.47621 * 292.40173 * 4 2 1 37 37 H 1.09005 * 109.21508 * 37.76895 * 6 5 4 38 38 H 1.09000 * 109.21920 * 278.38742 * 6 5 4 39 39 H 1.08997 * 109.71898 * 166.41983 * 7 6 5 40 40 H 1.09005 * 109.72105 * 287.07409 * 7 6 5 41 41 H 0.97003 * 119.99539 * 359.97438 * 13 11 9 42 42 H 1.09000 * 109.47104 * 299.99974 * 14 13 11 43 43 H 1.09007 * 109.47180 * 59.99615 * 14 13 11 44 44 H 1.09000 * 109.47391 * 300.00238 * 15 14 13 45 45 H 1.09007 * 109.46970 * 59.99927 * 15 14 13 46 46 H 1.09000 * 109.47133 * 300.00500 * 16 15 14 47 47 H 1.08997 * 109.47140 * 60.00234 * 16 15 14 48 48 H 0.97000 * 120.00104 * 180.02562 * 20 19 17 49 49 H 1.08994 * 109.56814 * 162.55898 * 25 8 7 50 50 H 1.09006 * 109.57169 * 282.91818 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.4935 -0.8815 1.1615 6 6 4.0054 -2.0078 0.3929 7 6 5.4452 -1.7485 -0.0548 8 7 6.2032 -1.2454 1.1034 9 6 7.2632 -1.9181 1.5934 10 8 7.5371 -3.0180 1.1602 11 6 8.1015 -1.3092 2.6706 12 8 7.8909 -0.1703 3.0326 13 7 9.0914 -2.0252 3.2400 14 6 9.9134 -1.4283 4.2954 15 6 10.9551 -2.4449 4.7669 16 6 11.8141 -1.8213 5.8687 17 6 12.8406 -2.8224 6.3327 18 1 12.8765 -3.8052 5.8865 19 6 13.7332 -2.4838 7.3274 20 7 13.6892 -1.2871 7.8710 21 14 15.0052 -3.7250 7.9029 22 1 15.8711 -4.1124 6.7604 23 1 15.8389 -3.1196 8.9723 24 1 14.3170 -4.9294 8.4332 25 6 5.7561 0.0203 1.7035 26 6 4.2543 0.0139 1.7918 27 8 3.7108 0.8626 2.4664 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.5755 1.9920 -0.8187 33 1 1.7855 1.9179 0.9473 34 1 3.1224 1.4451 -0.1286 35 1 1.5699 -1.7022 1.3198 36 1 1.7919 -0.1349 2.1341 37 1 3.3779 -2.1573 -0.4858 38 1 3.9779 -2.9057 1.0104 39 1 5.8921 -2.6763 -0.4118 40 1 5.4543 -1.0047 -0.8516 41 1 9.2594 -2.9358 2.9508 42 1 10.4182 -0.5440 3.9065 43 1 9.2778 -1.1443 5.1342 44 1 10.4500 -3.3289 5.1559 45 1 11.5908 -2.7292 3.9282 46 1 12.3192 -0.9374 5.4793 47 1 11.1787 -1.5367 6.7074 48 1 14.3175 -1.0488 8.5706 49 1 6.1800 0.1204 2.7026 50 1 6.0815 0.8544 1.0817 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000286351377.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:40 Heat of formation + Delta-G solvation = -125.965685 kcal Electronic energy + Delta-G solvation = -29560.815581 eV Core-core repulsion = 25394.276608 eV Total energy + Delta-G solvation = -4166.538973 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.37141 -41.26150 -39.73073 -37.80384 -37.61224 -36.90490 -35.30630 -34.73239 -33.06223 -31.35833 -29.63943 -28.88425 -28.05140 -26.71918 -26.20464 -25.02498 -23.46593 -22.39313 -21.48372 -21.14941 -20.04627 -19.09180 -18.62856 -18.36465 -17.68013 -17.55116 -17.28410 -16.90969 -16.58663 -16.35241 -16.20697 -15.98689 -15.61145 -15.25992 -15.21070 -14.75009 -14.61036 -14.27548 -14.15211 -13.86083 -13.78008 -13.74970 -13.54021 -13.21536 -13.13190 -12.73622 -12.72020 -12.63362 -12.54342 -12.47894 -12.41588 -12.14084 -11.89071 -11.69650 -11.68581 -11.54787 -11.37916 -11.22733 -10.54827 -10.53662 -10.31146 -10.03265 -9.74517 -8.18829 -6.30000 0.18498 1.03926 1.42455 1.42985 1.45024 1.52931 1.82062 1.99174 2.23780 2.42966 3.14611 3.15064 3.31022 3.67768 3.86537 3.94651 4.07145 4.09704 4.12377 4.14407 4.18323 4.30844 4.43534 4.52484 4.55339 4.63174 4.68883 4.77541 4.79468 4.85965 4.90031 4.91654 4.95671 4.96795 5.05752 5.15403 5.21418 5.25359 5.29266 5.39832 5.51553 5.51962 5.64015 5.71062 5.84783 6.04020 6.23575 6.29250 6.51967 6.81635 6.86951 6.97785 7.39478 8.92694 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.029421 B = 0.001756 C = 0.001704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.474750 B =15945.712813 C =16429.004395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.103 4.103 3 C -0.138 4.138 4 C 0.103 3.897 5 N -0.597 5.597 6 C 0.099 3.901 7 C 0.091 3.909 8 N -0.586 5.586 9 C 0.524 3.476 10 O -0.524 6.524 11 C 0.497 3.503 12 O -0.537 6.537 13 N -0.682 5.682 14 C 0.127 3.873 15 C -0.106 4.106 16 C 0.024 3.976 17 C -0.544 4.544 18 H 0.065 0.935 19 C -0.001 4.001 20 N -0.933 5.933 21 Si 0.965 3.035 22 H -0.266 1.266 23 H -0.286 1.286 24 H -0.267 1.267 25 C 0.082 3.918 26 C 0.508 3.492 27 O -0.576 6.576 28 H 0.047 0.953 29 H 0.064 0.936 30 H 0.070 0.930 31 H 0.089 0.911 32 H 0.061 0.939 33 H 0.037 0.963 34 H 0.036 0.964 35 H 0.099 0.901 36 H 0.067 0.933 37 H 0.130 0.870 38 H 0.074 0.926 39 H 0.123 0.877 40 H 0.108 0.892 41 H 0.420 0.580 42 H 0.066 0.934 43 H 0.064 0.936 44 H 0.067 0.933 45 H 0.068 0.932 46 H -0.004 1.004 47 H -0.005 1.005 48 H 0.263 0.737 49 H 0.138 0.862 50 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.755 -1.996 -22.963 35.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.122 4.122 3 C -0.196 4.196 4 C -0.019 4.019 5 N -0.328 5.328 6 C -0.023 4.023 7 C -0.030 4.030 8 N -0.321 5.321 9 C 0.306 3.694 10 O -0.400 6.400 11 C 0.278 3.722 12 O -0.416 6.416 13 N -0.334 5.334 14 C 0.004 3.996 15 C -0.144 4.144 16 C -0.014 4.014 17 C -0.582 4.582 18 H 0.083 0.917 19 C -0.199 4.199 20 N -0.573 5.573 21 Si 0.790 3.210 22 H -0.191 1.191 23 H -0.211 1.211 24 H -0.192 1.192 25 C -0.043 4.043 26 C 0.295 3.705 27 O -0.455 6.455 28 H 0.066 0.934 29 H 0.083 0.917 30 H 0.089 0.911 31 H 0.107 0.893 32 H 0.080 0.920 33 H 0.056 0.944 34 H 0.055 0.945 35 H 0.117 0.883 36 H 0.086 0.914 37 H 0.148 0.852 38 H 0.093 0.907 39 H 0.141 0.859 40 H 0.126 0.874 41 H 0.258 0.742 42 H 0.084 0.916 43 H 0.083 0.917 44 H 0.086 0.914 45 H 0.087 0.913 46 H 0.015 0.985 47 H 0.014 0.986 48 H 0.072 0.928 49 H 0.155 0.845 50 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -26.914 -1.276 -22.461 35.079 hybrid contribution 1.061 -0.344 0.757 1.348 sum -25.853 -1.620 -21.704 33.795 Atomic orbital electron populations 1.21756 0.93443 1.02735 1.02080 1.21438 0.96788 0.95831 0.98132 1.21751 0.99920 0.96776 1.01126 1.21837 0.78774 1.02111 0.99205 1.47344 1.07580 1.27343 1.50528 1.21999 0.94679 0.87836 0.97835 1.22431 0.89998 1.03770 0.86793 1.48016 1.28750 1.23339 1.32009 1.19826 0.81583 0.84955 0.82990 1.90767 1.70196 1.18883 1.60163 1.20354 0.82178 0.86195 0.83424 1.90629 1.68565 1.18629 1.63823 1.45888 1.31731 1.18419 1.37333 1.21494 0.92240 0.96921 0.88965 1.21637 0.96018 0.97652 0.99050 1.18936 0.93882 0.95422 0.93120 1.21660 1.16186 1.00370 1.19978 0.91691 1.25979 0.99998 0.97287 0.96632 1.70094 1.38407 1.21495 1.27285 0.85500 0.78627 0.78882 0.78021 1.19115 1.21139 1.19172 1.22631 0.89951 0.86895 1.04798 1.20412 0.89994 0.81247 0.78804 1.90742 1.73583 1.39289 1.41914 0.93378 0.91740 0.91108 0.89256 0.91988 0.94370 0.94525 0.88286 0.91449 0.85249 0.90732 0.85910 0.87378 0.74210 0.91562 0.91732 0.91423 0.91329 0.98523 0.98616 0.92826 0.84490 0.86316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.02 9.19 71.98 0.66 -0.36 16 2 C -0.10 -0.95 3.06 -10.79 -0.03 -0.99 16 3 C -0.14 -1.97 8.12 71.98 0.58 -1.38 16 4 C 0.10 1.25 4.78 86.38 0.41 1.66 16 5 N -0.60 -8.31 2.68 -826.43 -2.21 -10.52 16 6 C 0.10 0.72 6.49 86.53 0.56 1.28 16 7 C 0.09 0.86 6.52 86.23 0.56 1.42 16 8 N -0.59 -10.40 2.98 -824.86 -2.46 -12.86 16 9 C 0.52 12.00 7.77 87.27 0.68 12.68 16 10 O -0.52 -12.96 16.00 -3.24 -0.05 -13.01 16 11 C 0.50 13.68 7.75 87.27 0.68 14.36 16 12 O -0.54 -17.03 13.27 -3.25 -0.04 -17.07 16 13 N -0.68 -18.78 5.55 -464.40 -2.58 -21.35 16 14 C 0.13 4.19 5.67 86.38 0.49 4.68 16 15 C -0.11 -3.96 5.27 30.59 0.16 -3.80 16 16 C 0.02 1.23 4.97 29.85 0.15 1.37 16 17 C -0.54 -30.10 9.11 25.60 0.23 -29.87 16 18 H 0.06 3.39 7.74 -2.91 -0.02 3.37 16 19 C 0.00 -0.06 5.46 84.65 0.46 0.40 16 20 N -0.93 -56.41 13.29 21.44 0.28 -56.12 16 21 Si 0.97 43.64 29.54 68.60 2.03 45.66 16 22 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 23 H -0.29 -12.76 7.11 99.48 0.71 -12.06 16 24 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 25 C 0.08 1.68 5.86 85.45 0.50 2.18 16 26 C 0.51 10.76 6.40 87.80 0.56 11.32 16 27 O -0.58 -16.66 15.28 -3.02 -0.05 -16.71 16 28 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 29 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 30 H 0.07 0.32 8.14 -2.39 -0.02 0.30 16 31 H 0.09 0.52 7.58 -2.39 -0.02 0.50 16 32 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.04 0.72 7.97 -2.39 -0.02 0.70 16 34 H 0.04 0.60 7.22 -2.39 -0.02 0.58 16 35 H 0.10 0.73 8.07 -2.38 -0.02 0.71 16 36 H 0.07 1.24 6.84 -2.39 -0.02 1.23 16 37 H 0.13 0.06 7.51 -2.38 -0.02 0.04 16 38 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 39 H 0.12 1.10 7.09 -2.39 -0.02 1.08 16 40 H 0.11 0.61 8.14 -2.38 -0.02 0.59 16 41 H 0.42 10.16 7.96 -92.71 -0.74 9.42 16 42 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 43 H 0.06 2.25 8.14 -2.38 -0.02 2.23 16 44 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 45 H 0.07 2.43 8.14 -2.38 -0.02 2.41 16 46 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 47 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 48 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 49 H 0.14 3.61 4.89 -9.10 -0.04 3.57 16 50 H 0.12 2.12 8.14 -2.38 -0.02 2.10 16 Total: -1.00 -73.13 403.31 1.75 -71.38 By element: Atomic # 1 Polarization: 15.49 SS G_CDS: 0.17 Total: 15.66 kcal Atomic # 6 Polarization: 8.29 SS G_CDS: 6.66 Total: 14.95 kcal Atomic # 7 Polarization: -93.89 SS G_CDS: -6.96 Total: -100.85 kcal Atomic # 8 Polarization: -46.65 SS G_CDS: -0.14 Total: -46.80 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.66 kcal Total: -73.13 1.75 -71.38 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286351377.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.585 kcal (2) G-P(sol) polarization free energy of solvation -73.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds