Wall clock time and date at job start Tue Mar 31 2020 22:35:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.47271 * 2 1 4 4 C 1.50698 * 109.47318 * 120.00086 * 2 1 3 5 5 H 1.08009 * 120.00140 * 124.02861 * 4 2 1 6 6 C 1.37874 * 119.99960 * 304.02944 * 4 2 1 7 7 N 1.31511 * 120.00119 * 4.62842 * 6 4 2 8 8 Si 1.86800 * 120.00156 * 184.62434 * 6 4 2 9 9 H 1.48493 * 109.47326 * 265.00242 * 8 6 4 10 10 H 1.48502 * 109.46957 * 25.00365 * 8 6 4 11 11 H 1.48502 * 109.47126 * 145.00146 * 8 6 4 12 12 C 1.53009 * 109.47224 * 240.00271 * 2 1 3 13 13 N 1.46498 * 109.47047 * 59.99986 * 12 2 1 14 14 C 1.34771 * 119.99765 * 180.02562 * 13 12 2 15 15 O 1.21350 * 120.00246 * 0.02562 * 14 13 12 16 16 C 1.49455 * 120.00102 * 179.97438 * 14 13 12 17 17 O 1.21350 * 119.99734 * 6.74914 * 16 14 13 18 18 N 1.34777 * 120.00143 * 186.74064 * 16 14 13 19 19 C 1.47127 * 121.01345 * 6.59700 * 18 16 14 20 20 C 1.53548 * 108.01267 * 128.11825 * 19 18 16 21 21 N 1.47148 * 109.57459 * 54.67501 * 20 19 18 22 22 C 1.47173 * 109.76763 * 173.70892 * 21 20 19 23 23 C 1.52964 * 109.67821 * 181.14598 * 22 21 20 24 24 O 1.43100 * 108.90349 * 302.63677 * 23 22 21 25 25 C 1.42879 * 113.34078 * 59.60406 * 24 23 22 26 26 C 1.46929 * 111.29383 * 297.08110 * 21 20 19 27 27 H 1.08998 * 109.95625 * 301.37903 * 26 21 20 28 28 C 1.46944 * 121.01058 * 186.88335 * 18 16 14 29 29 H 1.08997 * 109.47340 * 295.19887 * 1 2 3 30 30 H 1.09000 * 109.47260 * 55.19767 * 1 2 3 31 31 H 1.09000 * 109.47276 * 175.19340 * 1 2 3 32 32 H 1.08997 * 109.47081 * 179.97438 * 3 2 1 33 33 H 1.09003 * 109.47068 * 300.00457 * 3 2 1 34 34 H 1.09001 * 109.46749 * 59.99725 * 3 2 1 35 35 H 0.96997 * 120.00504 * 179.97438 * 7 6 4 36 36 H 1.09004 * 109.46981 * 179.97438 * 12 2 1 37 37 H 1.08997 * 109.46920 * 299.99734 * 12 2 1 38 38 H 0.96996 * 120.00093 * 0.02562 * 13 12 2 39 39 H 1.08990 * 109.70912 * 247.85717 * 19 18 16 40 40 H 1.08998 * 109.70967 * 8.48860 * 19 18 16 41 41 H 1.08994 * 109.58508 * 294.57364 * 20 19 18 42 42 H 1.09003 * 109.36729 * 174.63982 * 20 19 18 43 43 H 1.09000 * 109.43898 * 61.07941 * 22 21 20 44 44 H 1.08998 * 109.40291 * 301.18539 * 22 21 20 45 45 H 1.08999 * 109.56475 * 182.80743 * 23 22 21 46 46 H 1.08996 * 109.56535 * 62.45723 * 23 22 21 47 47 H 1.08994 * 109.43053 * 180.93271 * 25 24 23 48 48 H 1.08998 * 109.42760 * 61.08304 * 25 24 23 49 49 H 1.09000 * 109.56871 * 351.19135 * 28 18 16 50 50 H 1.08998 * 109.56450 * 111.42627 * 28 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.7059 -1.5491 1.1326 6 6 1.6322 -0.2898 2.4810 7 7 0.7423 0.6715 2.5979 8 14 2.3539 -1.0853 4.0093 9 1 1.4530 -2.1700 4.4751 10 1 3.6879 -1.6534 3.6886 11 1 2.4945 -0.0650 5.0790 12 6 2.0400 -0.7212 -1.2493 13 7 1.5517 -0.0306 -2.4455 14 6 1.8769 -0.4913 -3.6695 15 8 2.5738 -1.4784 -3.7809 16 6 1.3783 0.2129 -4.8898 17 8 0.7849 1.2660 -4.7827 18 7 1.5878 -0.3215 -6.1092 19 6 2.1752 -1.6622 -6.2586 20 6 1.2608 -2.4811 -7.1810 21 7 1.0622 -1.7578 -8.4469 22 6 0.3124 -2.6025 -9.3905 23 6 0.1319 -1.8597 -10.7154 24 8 -0.5375 -0.6200 -10.4645 25 6 0.1734 0.2359 -9.5682 26 6 0.3785 -0.4759 -8.2274 27 1 -0.5876 -0.6461 -7.7524 28 6 1.2423 0.4196 -7.3302 29 1 -0.3634 0.4375 0.9298 30 1 -0.3634 0.5865 -0.8438 31 1 -0.3634 -1.0240 -0.0861 32 1 3.1300 1.4425 0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 0.4605 0.9672 3.4776 36 1 3.1300 -0.7208 -1.2495 37 1 1.6767 -1.7489 -1.2493 38 1 0.9943 0.7583 -2.3564 39 1 3.1689 -1.5811 -6.6990 40 1 2.2428 -2.1445 -5.2835 41 1 0.2969 -2.6357 -6.6963 42 1 1.7235 -3.4470 -7.3838 43 1 -0.6654 -2.8366 -8.9697 44 1 0.8629 -3.5269 -9.5651 45 1 -0.4661 -2.4663 -11.3955 46 1 1.1076 -1.6640 -11.1601 47 1 -0.3984 1.1501 -9.4096 48 1 1.1434 0.4858 -9.9982 49 1 0.6847 1.3182 -7.0663 50 1 2.1542 0.6977 -7.8586 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332735557.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:32 Heat of formation + Delta-G solvation = -86.746200 kcal Electronic energy + Delta-G solvation = -30713.526109 eV Core-core repulsion = 26548.687820 eV Total energy + Delta-G solvation = -4164.838289 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.05763 -39.98136 -38.42781 -37.24753 -36.52888 -34.70699 -33.40963 -32.59246 -30.94987 -30.56436 -27.44870 -26.40879 -25.90082 -25.74791 -25.21310 -23.74618 -23.17926 -21.74692 -20.65572 -19.80619 -18.85460 -17.71787 -17.15305 -16.68314 -16.43970 -16.15124 -15.87544 -15.63825 -15.24895 -15.20220 -15.05134 -14.82843 -14.49886 -14.38687 -14.37394 -13.69792 -13.40504 -12.98277 -12.87243 -12.59784 -12.36972 -12.32557 -12.21330 -11.96196 -11.62892 -11.48690 -11.36007 -11.21310 -11.14690 -10.95453 -10.87536 -10.73545 -10.45527 -10.18869 -10.16087 -9.69867 -9.47794 -9.11873 -9.03380 -8.84894 -8.73411 -8.63416 -8.40569 -6.03911 -4.17312 1.55412 2.37112 3.25251 3.25470 3.33165 3.35042 3.37090 3.47723 3.67401 4.34225 4.34676 4.41006 4.48472 4.64325 4.67944 4.75815 4.82737 4.96197 5.04531 5.11847 5.19917 5.21657 5.23002 5.34458 5.39599 5.41704 5.58576 5.67308 5.89410 6.05212 6.11449 6.18120 6.42558 6.44811 6.52004 6.63037 6.68545 6.80233 6.81380 6.90550 6.97140 7.01279 7.29173 7.49996 7.52799 7.65128 7.88600 7.92865 8.13162 8.28010 8.38756 8.83205 9.49283 10.94655 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.030154 B = 0.002180 C = 0.002115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.342878 B =12838.698737 C =13237.231953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.055 3.945 3 C -0.130 4.130 4 C -0.506 4.506 5 H 0.059 0.941 6 C 0.066 3.934 7 N -0.883 5.883 8 Si 0.894 3.106 9 H -0.282 1.282 10 H -0.273 1.273 11 H -0.286 1.286 12 C 0.127 3.873 13 N -0.676 5.676 14 C 0.499 3.501 15 O -0.527 6.527 16 C 0.510 3.490 17 O -0.521 6.521 18 N -0.589 5.589 19 C 0.076 3.924 20 C 0.037 3.963 21 N -0.528 5.528 22 C 0.014 3.986 23 C 0.062 3.938 24 O -0.382 6.382 25 C 0.070 3.930 26 C 0.035 3.965 27 H 0.058 0.942 28 C 0.119 3.881 29 H 0.104 0.896 30 H 0.005 0.995 31 H 0.024 0.976 32 H 0.030 0.970 33 H 0.011 0.989 34 H 0.075 0.925 35 H 0.261 0.739 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.411 0.589 39 H 0.076 0.924 40 H 0.150 0.850 41 H 0.040 0.960 42 H 0.091 0.909 43 H 0.044 0.956 44 H 0.089 0.911 45 H 0.099 0.901 46 H 0.062 0.938 47 H 0.102 0.898 48 H 0.063 0.937 49 H 0.100 0.900 50 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.387 -3.554 -23.922 24.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.055 3.945 3 C -0.188 4.188 4 C -0.545 4.545 5 H 0.077 0.923 6 C -0.135 4.135 7 N -0.522 5.522 8 Si 0.722 3.278 9 H -0.208 1.208 10 H -0.198 1.198 11 H -0.212 1.212 12 C 0.005 3.995 13 N -0.326 5.326 14 C 0.279 3.721 15 O -0.407 6.407 16 C 0.293 3.707 17 O -0.397 6.397 18 N -0.323 5.323 19 C -0.045 4.045 20 C -0.091 4.091 21 N -0.254 5.254 22 C -0.114 4.114 23 C -0.015 4.015 24 O -0.300 6.300 25 C -0.008 4.008 26 C -0.075 4.075 27 H 0.076 0.924 28 C -0.004 4.004 29 H 0.123 0.877 30 H 0.024 0.976 31 H 0.043 0.957 32 H 0.049 0.951 33 H 0.030 0.970 34 H 0.094 0.906 35 H 0.071 0.929 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.249 0.751 39 H 0.095 0.905 40 H 0.167 0.833 41 H 0.059 0.941 42 H 0.109 0.891 43 H 0.062 0.938 44 H 0.107 0.893 45 H 0.117 0.883 46 H 0.080 0.920 47 H 0.120 0.880 48 H 0.081 0.919 49 H 0.118 0.882 50 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -0.028 -3.401 -24.017 24.256 hybrid contribution -0.419 -0.394 1.235 1.363 sum -0.447 -3.795 -22.781 23.099 Atomic orbital electron populations 1.22018 0.97316 0.98600 1.02096 1.18396 0.93315 0.92588 0.90245 1.21808 0.98713 0.98296 0.99936 1.20945 1.28219 1.15508 0.89820 0.92319 1.24888 0.94657 0.95034 0.98945 1.69747 1.30313 1.28765 1.23348 0.86538 0.79603 0.78980 0.82642 1.20787 1.19826 1.21181 1.21996 0.98582 0.96100 0.82779 1.46263 1.49977 1.31241 1.05128 1.19937 0.82260 0.84989 0.84925 1.90433 1.38814 1.26200 1.85266 1.20436 0.80016 0.85596 0.84672 1.90747 1.39771 1.22951 1.86202 1.47917 1.61303 1.18511 1.04556 1.23115 0.95818 0.81230 1.04381 1.22719 0.99549 0.97674 0.89136 1.62590 1.47441 1.03683 1.11662 1.22821 0.97448 0.97123 0.93974 1.22696 0.98023 0.85240 0.95553 1.88041 1.47767 1.29142 1.65026 1.22640 0.97742 0.92899 0.87503 1.22696 0.96625 0.91192 0.96959 0.92422 1.21721 0.99740 0.94961 0.84011 0.87743 0.97600 0.95716 0.95121 0.96964 0.90579 0.92902 0.91907 0.91820 0.75108 0.90534 0.83306 0.94126 0.89060 0.93803 0.89293 0.88303 0.92018 0.87975 0.91860 0.88153 0.90186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.25 8.03 37.16 0.30 -2.95 16 2 C 0.06 1.26 0.51 -155.66 -0.08 1.18 16 3 C -0.13 -2.90 8.12 37.16 0.30 -2.60 16 4 C -0.51 -12.90 8.01 -34.44 -0.28 -13.18 16 5 H 0.06 1.49 7.75 -52.48 -0.41 1.09 16 6 C 0.07 1.71 5.14 -17.82 -0.09 1.62 16 7 N -0.88 -23.29 9.37 55.43 0.52 -22.77 16 8 Si 0.89 20.34 29.54 -169.99 -5.02 15.31 16 9 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 10 H -0.27 -6.20 7.11 56.52 0.40 -5.79 16 11 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 12 C 0.13 2.57 4.50 -4.04 -0.02 2.56 16 13 N -0.68 -12.20 4.98 -60.73 -0.30 -12.51 16 14 C 0.50 8.46 7.76 -11.59 -0.09 8.37 16 15 O -0.53 -9.30 13.17 5.50 0.07 -9.22 16 16 C 0.51 7.91 7.76 -11.58 -0.09 7.82 16 17 O -0.52 -9.01 15.96 5.50 0.09 -8.93 16 18 N -0.59 -7.48 3.00 -172.76 -0.52 -8.00 16 19 C 0.08 0.86 6.20 -3.42 -0.02 0.84 16 20 C 0.04 0.36 5.54 -3.40 -0.02 0.34 16 21 N -0.53 -4.79 4.71 -225.50 -1.06 -5.85 16 22 C 0.01 0.11 5.56 -3.69 -0.02 0.09 16 23 C 0.06 0.43 7.01 37.14 0.26 0.69 16 24 O -0.38 -3.59 10.85 -35.23 -0.38 -3.97 16 25 C 0.07 0.57 6.19 37.25 0.23 0.80 16 26 C 0.04 0.33 2.54 -67.40 -0.17 0.16 16 27 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 28 C 0.12 1.23 5.82 -3.59 -0.02 1.21 16 29 H 0.10 2.65 5.45 -51.93 -0.28 2.36 16 30 H 0.01 0.11 7.00 -51.93 -0.36 -0.26 16 31 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.01 0.23 6.86 -51.93 -0.36 -0.12 16 34 H 0.08 1.87 6.58 -51.93 -0.34 1.53 16 35 H 0.26 6.64 8.31 -40.82 -0.34 6.30 16 36 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 37 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 38 H 0.41 7.41 5.69 -40.82 -0.23 7.17 16 39 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.15 1.97 4.35 -54.66 -0.24 1.73 16 41 H 0.04 0.43 8.14 -51.93 -0.42 0.00 16 42 H 0.09 0.71 8.07 -51.93 -0.42 0.29 16 43 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 44 H 0.09 0.53 8.10 -51.93 -0.42 0.11 16 45 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16 46 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 47 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 48 H 0.06 0.46 8.12 -51.93 -0.42 0.04 16 49 H 0.10 1.08 7.05 -51.93 -0.37 0.72 16 50 H 0.08 0.74 8.11 -51.93 -0.42 0.32 16 LS Contribution 382.58 15.07 5.77 5.77 Total: -1.00 -28.12 382.58 -8.70 -36.82 By element: Atomic # 1 Polarization: 14.46 SS G_CDS: -8.06 Total: 6.41 kcal Atomic # 6 Polarization: 6.75 SS G_CDS: 0.19 Total: 6.94 kcal Atomic # 7 Polarization: -47.77 SS G_CDS: -1.36 Total: -49.13 kcal Atomic # 8 Polarization: -21.90 SS G_CDS: -0.22 Total: -22.13 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.31 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -28.12 -8.70 -36.82 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332735557.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.927 kcal (2) G-P(sol) polarization free energy of solvation -28.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds