Wall clock time and date at job start Tue Mar 31 2020 22:35:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.47271 * 2 1 4 4 C 1.50698 * 109.47318 * 120.00086 * 2 1 3 5 5 H 1.08009 * 120.00140 * 124.02861 * 4 2 1 6 6 C 1.37874 * 119.99960 * 304.02944 * 4 2 1 7 7 N 1.31511 * 120.00119 * 4.62842 * 6 4 2 8 8 Si 1.86800 * 120.00156 * 184.62434 * 6 4 2 9 9 H 1.48493 * 109.47326 * 265.00242 * 8 6 4 10 10 H 1.48502 * 109.46957 * 25.00365 * 8 6 4 11 11 H 1.48502 * 109.47126 * 145.00146 * 8 6 4 12 12 C 1.53009 * 109.47224 * 240.00271 * 2 1 3 13 13 N 1.46498 * 109.47047 * 59.99986 * 12 2 1 14 14 C 1.34771 * 119.99765 * 180.02562 * 13 12 2 15 15 O 1.21350 * 120.00246 * 0.02562 * 14 13 12 16 16 C 1.49455 * 120.00102 * 179.97438 * 14 13 12 17 17 O 1.21350 * 119.99734 * 6.74914 * 16 14 13 18 18 N 1.34777 * 120.00143 * 186.74064 * 16 14 13 19 19 C 1.47127 * 121.01345 * 6.59700 * 18 16 14 20 20 C 1.53548 * 108.01267 * 128.11825 * 19 18 16 21 21 N 1.47148 * 109.57459 * 54.67501 * 20 19 18 22 22 C 1.47173 * 109.76763 * 173.70892 * 21 20 19 23 23 C 1.52964 * 109.67821 * 181.14598 * 22 21 20 24 24 O 1.43100 * 108.90349 * 302.63677 * 23 22 21 25 25 C 1.42879 * 113.34078 * 59.60406 * 24 23 22 26 26 C 1.46929 * 111.29383 * 297.08110 * 21 20 19 27 27 H 1.08998 * 109.95625 * 301.37903 * 26 21 20 28 28 C 1.46944 * 121.01058 * 186.88335 * 18 16 14 29 29 H 1.08997 * 109.47340 * 295.19887 * 1 2 3 30 30 H 1.09000 * 109.47260 * 55.19767 * 1 2 3 31 31 H 1.09000 * 109.47276 * 175.19340 * 1 2 3 32 32 H 1.08997 * 109.47081 * 179.97438 * 3 2 1 33 33 H 1.09003 * 109.47068 * 300.00457 * 3 2 1 34 34 H 1.09001 * 109.46749 * 59.99725 * 3 2 1 35 35 H 0.96997 * 120.00504 * 179.97438 * 7 6 4 36 36 H 1.09004 * 109.46981 * 179.97438 * 12 2 1 37 37 H 1.08997 * 109.46920 * 299.99734 * 12 2 1 38 38 H 0.96996 * 120.00093 * 0.02562 * 13 12 2 39 39 H 1.08990 * 109.70912 * 247.85717 * 19 18 16 40 40 H 1.08998 * 109.70967 * 8.48860 * 19 18 16 41 41 H 1.08994 * 109.58508 * 294.57364 * 20 19 18 42 42 H 1.09003 * 109.36729 * 174.63982 * 20 19 18 43 43 H 1.09000 * 109.43898 * 61.07941 * 22 21 20 44 44 H 1.08998 * 109.40291 * 301.18539 * 22 21 20 45 45 H 1.08999 * 109.56475 * 182.80743 * 23 22 21 46 46 H 1.08996 * 109.56535 * 62.45723 * 23 22 21 47 47 H 1.08994 * 109.43053 * 180.93271 * 25 24 23 48 48 H 1.08998 * 109.42760 * 61.08304 * 25 24 23 49 49 H 1.09000 * 109.56871 * 351.19135 * 28 18 16 50 50 H 1.08998 * 109.56450 * 111.42627 * 28 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.7059 -1.5491 1.1326 6 6 1.6322 -0.2898 2.4810 7 7 0.7423 0.6715 2.5979 8 14 2.3539 -1.0853 4.0093 9 1 1.4530 -2.1700 4.4751 10 1 3.6879 -1.6534 3.6886 11 1 2.4945 -0.0650 5.0790 12 6 2.0400 -0.7212 -1.2493 13 7 1.5517 -0.0306 -2.4455 14 6 1.8769 -0.4913 -3.6695 15 8 2.5738 -1.4784 -3.7809 16 6 1.3783 0.2129 -4.8898 17 8 0.7849 1.2660 -4.7827 18 7 1.5878 -0.3215 -6.1092 19 6 2.1752 -1.6622 -6.2586 20 6 1.2608 -2.4811 -7.1810 21 7 1.0622 -1.7578 -8.4469 22 6 0.3124 -2.6025 -9.3905 23 6 0.1319 -1.8597 -10.7154 24 8 -0.5375 -0.6200 -10.4645 25 6 0.1734 0.2359 -9.5682 26 6 0.3785 -0.4759 -8.2274 27 1 -0.5876 -0.6461 -7.7524 28 6 1.2423 0.4196 -7.3302 29 1 -0.3634 0.4375 0.9298 30 1 -0.3634 0.5865 -0.8438 31 1 -0.3634 -1.0240 -0.0861 32 1 3.1300 1.4425 0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 0.4605 0.9672 3.4776 36 1 3.1300 -0.7208 -1.2495 37 1 1.6767 -1.7489 -1.2493 38 1 0.9943 0.7583 -2.3564 39 1 3.1689 -1.5811 -6.6990 40 1 2.2428 -2.1445 -5.2835 41 1 0.2969 -2.6357 -6.6963 42 1 1.7235 -3.4470 -7.3838 43 1 -0.6654 -2.8366 -8.9697 44 1 0.8629 -3.5269 -9.5651 45 1 -0.4661 -2.4663 -11.3955 46 1 1.1076 -1.6640 -11.1601 47 1 -0.3984 1.1501 -9.4096 48 1 1.1434 0.4858 -9.9982 49 1 0.6847 1.3182 -7.0663 50 1 2.1542 0.6977 -7.8586 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000332735557.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:31 Heat of formation + Delta-G solvation = -106.609149 kcal Electronic energy + Delta-G solvation = -30714.387431 eV Core-core repulsion = 26548.687820 eV Total energy + Delta-G solvation = -4165.699611 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.16190 -40.91156 -39.68321 -38.38860 -37.94456 -35.68963 -34.94547 -33.39795 -32.76905 -31.30988 -28.58677 -27.59594 -27.49933 -27.14877 -26.87257 -24.64605 -24.22210 -22.67895 -21.55372 -20.97805 -20.55869 -18.94719 -18.26890 -17.81119 -17.39076 -17.29323 -17.19769 -16.68808 -16.64360 -16.24029 -16.06431 -15.80956 -15.67809 -15.54139 -15.13216 -15.04981 -14.78828 -14.61316 -14.19856 -14.07904 -13.54466 -13.29231 -13.08532 -13.07861 -13.03675 -12.72632 -12.68102 -12.60106 -12.39385 -12.30992 -12.26208 -12.08113 -12.07082 -11.63075 -11.51837 -11.27362 -10.87558 -10.74784 -10.43068 -10.32699 -10.10913 -9.98215 -9.52097 -7.99656 -6.18657 0.26444 1.20342 1.44010 1.47728 1.56100 2.03658 2.34519 2.48422 2.67933 2.87929 3.21441 3.25745 3.61743 3.68351 3.83765 3.95781 4.04315 4.16631 4.24604 4.32427 4.33225 4.39575 4.46917 4.50870 4.61008 4.66310 4.66724 4.70338 4.77074 4.84948 4.89784 4.94322 5.01150 5.02606 5.06591 5.12096 5.16779 5.32045 5.48998 5.63085 5.66799 5.71547 5.80230 5.91965 6.06269 6.10986 6.19775 6.23740 6.44805 6.62463 6.84753 6.91586 7.49934 8.96770 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.030154 B = 0.002180 C = 0.002115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.342878 B =12838.698737 C =13237.231953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.049 3.951 3 C -0.120 4.120 4 C -0.523 4.523 5 H 0.053 0.947 6 C 0.025 3.975 7 N -0.901 5.901 8 Si 0.948 3.052 9 H -0.280 1.280 10 H -0.271 1.271 11 H -0.286 1.286 12 C 0.144 3.856 13 N -0.679 5.679 14 C 0.500 3.500 15 O -0.533 6.533 16 C 0.511 3.489 17 O -0.544 6.544 18 N -0.581 5.581 19 C 0.077 3.923 20 C 0.043 3.957 21 N -0.528 5.528 22 C 0.015 3.985 23 C 0.060 3.940 24 O -0.401 6.401 25 C 0.072 3.928 26 C 0.040 3.960 27 H 0.036 0.964 28 C 0.118 3.882 29 H 0.080 0.920 30 H 0.024 0.976 31 H 0.019 0.981 32 H 0.029 0.971 33 H 0.031 0.969 34 H 0.051 0.949 35 H 0.260 0.740 36 H 0.058 0.942 37 H 0.057 0.943 38 H 0.412 0.588 39 H 0.088 0.912 40 H 0.132 0.868 41 H 0.027 0.973 42 H 0.113 0.887 43 H 0.033 0.967 44 H 0.109 0.891 45 H 0.117 0.883 46 H 0.070 0.930 47 H 0.111 0.889 48 H 0.076 0.924 49 H 0.096 0.904 50 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.252 -4.210 -25.999 26.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.049 3.951 3 C -0.178 4.178 4 C -0.562 4.562 5 H 0.071 0.929 6 C -0.175 4.175 7 N -0.540 5.540 8 Si 0.775 3.225 9 H -0.207 1.207 10 H -0.196 1.196 11 H -0.211 1.211 12 C 0.021 3.979 13 N -0.330 5.330 14 C 0.281 3.719 15 O -0.413 6.413 16 C 0.293 3.707 17 O -0.421 6.421 18 N -0.314 5.314 19 C -0.045 4.045 20 C -0.085 4.085 21 N -0.254 5.254 22 C -0.113 4.113 23 C -0.017 4.017 24 O -0.320 6.320 25 C -0.005 4.005 26 C -0.070 4.070 27 H 0.054 0.946 28 C -0.004 4.004 29 H 0.099 0.901 30 H 0.043 0.957 31 H 0.038 0.962 32 H 0.048 0.952 33 H 0.050 0.950 34 H 0.070 0.930 35 H 0.069 0.931 36 H 0.076 0.924 37 H 0.075 0.925 38 H 0.250 0.750 39 H 0.106 0.894 40 H 0.149 0.851 41 H 0.045 0.955 42 H 0.131 0.869 43 H 0.051 0.949 44 H 0.127 0.873 45 H 0.135 0.865 46 H 0.088 0.912 47 H 0.129 0.871 48 H 0.094 0.906 49 H 0.114 0.886 50 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 0.621 -4.084 -26.140 26.465 hybrid contribution -0.610 -0.247 1.783 1.900 sum 0.011 -4.331 -24.358 24.740 Atomic orbital electron populations 1.21865 0.97376 0.98340 1.01566 1.18397 0.93263 0.92854 0.90625 1.21662 0.98519 0.97947 0.99650 1.21240 1.28187 1.15596 0.91135 0.92876 1.25510 0.95052 0.95637 1.01253 1.69875 1.30928 1.29532 1.23646 0.85691 0.78917 0.78103 0.79769 1.20655 1.19610 1.21140 1.21588 0.98052 0.95516 0.82740 1.46110 1.50505 1.31339 1.05011 1.20216 0.81820 0.84764 0.85069 1.90458 1.38881 1.26410 1.85584 1.20094 0.80263 0.85324 0.84973 1.90739 1.41112 1.23812 1.86470 1.48045 1.59971 1.18986 1.04375 1.23091 0.96846 0.80532 1.03994 1.22669 0.98578 0.98272 0.89001 1.62634 1.47586 1.03701 1.11451 1.22909 0.97011 0.97721 0.93674 1.22871 0.98728 0.84578 0.95511 1.88023 1.48716 1.30120 1.65102 1.22684 0.98518 0.92855 0.86475 1.22627 0.95305 0.91596 0.97463 0.94552 1.21901 1.00717 0.94749 0.83077 0.90142 0.95737 0.96173 0.95216 0.94968 0.93022 0.93057 0.92410 0.92476 0.75021 0.89361 0.85095 0.95478 0.86861 0.94873 0.87296 0.86520 0.91179 0.87084 0.90616 0.88614 0.88325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.12 8.03 71.98 0.58 -5.54 16 2 C 0.05 2.25 0.51 -52.93 -0.03 2.22 16 3 C -0.12 -5.35 8.12 71.98 0.58 -4.76 16 4 C -0.52 -26.80 8.01 25.60 0.21 -26.59 16 5 H 0.05 2.72 7.75 -2.91 -0.02 2.69 16 6 C 0.03 1.29 5.14 84.65 0.44 1.73 16 7 N -0.90 -48.01 9.37 21.45 0.20 -47.81 16 8 Si 0.95 41.82 29.54 68.60 2.03 43.84 16 9 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 10 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 11 H -0.29 -12.49 7.11 99.48 0.71 -11.78 16 12 C 0.14 5.79 4.50 86.38 0.39 6.18 16 13 N -0.68 -24.23 4.98 -464.40 -2.31 -26.54 16 14 C 0.50 16.72 7.76 87.27 0.68 17.39 16 15 O -0.53 -18.50 13.17 -3.25 -0.04 -18.54 16 16 C 0.51 15.52 7.76 87.27 0.68 16.20 16 17 O -0.54 -18.53 15.96 -3.25 -0.05 -18.58 16 18 N -0.58 -14.07 3.00 -818.84 -2.46 -16.53 16 19 C 0.08 1.62 6.20 86.44 0.54 2.15 16 20 C 0.04 0.74 5.54 86.44 0.48 1.22 16 21 N -0.53 -8.42 4.71 -867.35 -4.08 -12.51 16 22 C 0.01 0.18 5.56 86.24 0.48 0.66 16 23 C 0.06 0.68 7.01 71.97 0.50 1.19 16 24 O -0.40 -6.76 10.85 -148.98 -1.62 -8.38 16 25 C 0.07 1.03 6.19 72.04 0.45 1.47 16 26 C 0.04 0.70 2.54 45.10 0.11 0.81 16 27 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 28 C 0.12 2.25 5.82 86.43 0.50 2.75 16 29 H 0.08 4.13 5.45 -2.39 -0.01 4.11 16 30 H 0.02 0.98 7.00 -2.39 -0.02 0.97 16 31 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.03 1.26 6.86 -2.39 -0.02 1.25 16 34 H 0.05 2.55 6.58 -2.39 -0.02 2.53 16 35 H 0.26 13.35 8.31 -92.71 -0.77 12.58 16 36 H 0.06 2.37 8.14 -2.38 -0.02 2.35 16 37 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 38 H 0.41 14.61 5.69 -92.71 -0.53 14.08 16 39 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 40 H 0.13 3.35 4.35 -45.61 -0.20 3.15 16 41 H 0.03 0.54 8.14 -2.39 -0.02 0.52 16 42 H 0.11 1.46 8.07 -2.39 -0.02 1.44 16 43 H 0.03 0.50 8.14 -2.39 -0.02 0.48 16 44 H 0.11 0.95 8.10 -2.39 -0.02 0.93 16 45 H 0.12 0.90 8.14 -2.39 -0.02 0.88 16 46 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 47 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 48 H 0.08 0.90 8.12 -2.39 -0.02 0.88 16 49 H 0.10 1.96 7.05 -2.39 -0.02 1.94 16 50 H 0.10 1.57 8.11 -2.39 -0.02 1.55 16 Total: -1.00 -59.53 382.58 -1.52 -61.05 By element: Atomic # 1 Polarization: 26.66 SS G_CDS: 0.23 Total: 26.89 kcal Atomic # 6 Polarization: 10.52 SS G_CDS: 6.58 Total: 17.10 kcal Atomic # 7 Polarization: -94.74 SS G_CDS: -8.65 Total: -103.39 kcal Atomic # 8 Polarization: -43.79 SS G_CDS: -1.71 Total: -45.50 kcal Atomic # 14 Polarization: 41.82 SS G_CDS: 2.03 Total: 43.84 kcal Total: -59.53 -1.52 -61.05 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332735557.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.557 kcal (2) G-P(sol) polarization free energy of solvation -59.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds