Wall clock time and date at job start Tue Mar 31 2020 23:41:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47469 * 2 1 4 4 H 1.08993 * 109.66804 * 178.48900 * 3 2 1 5 5 C 1.50438 * 109.56413 * 58.19150 * 3 2 1 6 6 O 1.21277 * 118.49163 * 47.49665 * 5 3 2 7 7 N 1.33384 * 123.02514 * 227.46960 * 5 3 2 8 8 C 1.46494 * 117.71029 * 184.34001 * 7 5 3 9 9 C 1.53010 * 109.46917 * 90.00272 * 8 7 5 10 10 C 1.45646 * 124.58622 * 4.32325 * 7 5 3 11 11 C 1.53472 * 110.74096 * 337.97762 * 10 7 5 12 12 N 1.47043 * 109.56744 * 298.78689 * 3 2 1 13 13 C 1.34780 * 121.35710 * 342.53622 * 12 3 2 14 14 O 1.21347 * 119.99334 * 4.09360 * 13 12 3 15 15 C 1.49450 * 120.00310 * 184.09454 * 13 12 3 16 16 O 1.21341 * 120.00007 * 353.87521 * 15 13 12 17 17 N 1.34774 * 119.99676 * 173.87393 * 15 13 12 18 18 C 1.46504 * 119.99640 * 180.02562 * 17 15 13 19 19 C 1.53006 * 109.46893 * 179.97438 * 18 17 15 20 20 C 1.52998 * 109.46859 * 179.97438 * 19 18 17 21 21 C 1.50705 * 109.47045 * 179.97438 * 20 19 18 22 22 H 1.07997 * 119.99691 * 0.02562 * 21 20 19 23 23 C 1.37880 * 120.00037 * 179.97438 * 21 20 19 24 24 N 1.31506 * 119.99916 * 179.97438 * 23 21 20 25 25 Si 1.86793 * 119.99846 * 0.02562 * 23 21 20 26 26 H 1.48510 * 109.47402 * 89.99900 * 25 23 21 27 27 H 1.48502 * 109.47253 * 209.99398 * 25 23 21 28 28 H 1.48496 * 109.47591 * 329.99673 * 25 23 21 29 29 H 1.08998 * 109.47127 * 293.73111 * 1 2 3 30 30 H 1.09005 * 109.46877 * 53.73354 * 1 2 3 31 31 H 1.09003 * 109.46967 * 173.72806 * 1 2 3 32 32 H 1.09000 * 109.47652 * 240.00059 * 2 1 3 33 33 H 1.08997 * 109.46990 * 120.00164 * 2 1 3 34 34 H 1.08997 * 109.47457 * 209.99978 * 8 7 5 35 35 H 1.08996 * 109.47169 * 330.00690 * 8 7 5 36 36 H 1.08997 * 109.46817 * 300.00098 * 9 8 7 37 37 H 1.08996 * 109.46860 * 60.00228 * 9 8 7 38 38 H 1.08998 * 109.46870 * 180.02562 * 9 8 7 39 39 H 1.09004 * 109.22453 * 98.42921 * 10 7 5 40 40 H 1.09003 * 109.22286 * 217.81074 * 10 7 5 41 41 H 1.08996 * 109.84865 * 287.31735 * 11 10 7 42 42 H 1.08998 * 109.84134 * 166.50938 * 11 10 7 43 43 H 0.96999 * 120.00342 * 359.72169 * 17 15 13 44 44 H 1.08999 * 109.47191 * 299.99436 * 18 17 15 45 45 H 1.08997 * 109.47328 * 59.99840 * 18 17 15 46 46 H 1.09000 * 109.47264 * 299.99623 * 19 18 17 47 47 H 1.08997 * 109.47256 * 59.99806 * 19 18 17 48 48 H 1.08999 * 109.47676 * 299.99722 * 20 19 18 49 49 H 1.09005 * 109.46775 * 60.00448 * 20 19 18 50 50 H 0.96997 * 120.00443 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1296 1.4463 0.0271 5 6 1.5036 2.1665 1.2046 6 8 1.5808 1.6249 2.2870 7 7 0.9474 3.3770 1.1372 8 6 0.5517 4.0158 2.3948 9 6 1.7193 4.8438 2.9355 10 6 0.7061 4.1083 -0.0990 11 6 1.6249 3.6011 -1.2187 12 7 1.5752 2.1292 -1.2143 13 6 1.1271 1.4396 -2.2821 14 8 1.0314 0.2311 -2.2271 15 6 0.7480 2.1631 -3.5336 16 8 0.7372 3.3763 -3.5534 17 7 0.4183 1.4680 -4.6402 18 6 0.0473 2.1773 -5.8672 19 6 -0.2779 1.1620 -6.9647 20 6 -0.6660 1.9027 -8.2459 21 6 -0.9856 0.9027 -9.3271 22 1 -0.9191 -0.1553 -9.1208 23 6 -1.3641 1.3385 -10.5793 24 7 -1.6425 0.4659 -11.5228 25 14 -1.4799 3.1685 -10.9357 26 1 -0.1697 3.6599 -11.4332 27 1 -2.5218 3.4070 -11.9666 28 1 -1.8402 3.8935 -9.6909 29 1 -0.3633 0.4136 0.9408 30 1 -0.3633 0.6079 -0.8286 31 1 -0.3633 -1.0215 -0.1123 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 -0.3043 4.6670 2.2180 35 1 0.2818 3.2502 3.1221 36 1 2.5753 4.1926 3.1123 37 1 1.9892 5.6095 2.2082 38 1 1.4251 5.3188 3.8714 39 1 -0.3338 3.9752 -0.3976 40 1 0.8985 5.1682 0.0676 41 1 2.6467 3.9351 -1.0388 42 1 1.2783 3.9780 -2.1809 43 1 0.4309 0.4982 -4.6255 44 1 -0.8272 2.7996 -5.6769 45 1 0.8776 2.8060 -6.1887 46 1 0.5968 0.5400 -7.1550 47 1 -1.1081 0.5330 -6.6434 48 1 -1.5408 2.5244 -8.0555 49 1 0.1641 2.5319 -8.5674 50 1 -1.9084 0.7724 -12.4039 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343152884.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:41:57 Heat of formation + Delta-G solvation = -88.445298 kcal Electronic energy + Delta-G solvation = -30522.039413 eV Core-core repulsion = 26357.127446 eV Total energy + Delta-G solvation = -4164.911967 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.71271 -41.23795 -39.86976 -37.97634 -37.16843 -36.65580 -35.15492 -34.08478 -33.29560 -32.13364 -30.20471 -29.40380 -28.47595 -25.92833 -25.48201 -24.18335 -23.73475 -22.70603 -22.28525 -21.30851 -19.86830 -19.01266 -18.88922 -18.22656 -17.87034 -17.41811 -17.15662 -16.80817 -16.65448 -16.40067 -16.24386 -16.03813 -15.51823 -15.26490 -15.17185 -14.76382 -14.71923 -14.56760 -14.22059 -13.88391 -13.82746 -13.78475 -13.59731 -13.37292 -13.01901 -12.86539 -12.72305 -12.67622 -12.64946 -12.50376 -12.08611 -11.99353 -11.84136 -11.73102 -11.57509 -11.41253 -11.30573 -11.22954 -10.73418 -10.28566 -10.07590 -9.92387 -9.75141 -8.26270 -6.30804 0.25260 1.04122 1.40626 1.42017 1.42463 1.53934 1.79960 2.04842 2.36943 2.39580 3.09686 3.13312 3.31804 3.63929 3.77565 3.92546 4.04879 4.09389 4.12288 4.15209 4.22345 4.30879 4.41610 4.48642 4.51438 4.56924 4.62170 4.63176 4.74367 4.84038 4.90937 4.92640 4.95107 4.98827 5.03882 5.05506 5.18477 5.25716 5.31253 5.39262 5.46922 5.52211 5.59150 5.67977 5.82927 6.13162 6.29307 6.30363 6.62190 6.78190 6.88192 6.96047 7.33966 8.90289 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.023376 B = 0.002130 C = 0.001999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.542361 B =13140.280090 C =14003.366128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.119 4.119 3 C 0.135 3.865 4 H 0.124 0.876 5 C 0.513 3.487 6 O -0.574 6.574 7 N -0.599 5.599 8 C 0.095 3.905 9 C -0.158 4.158 10 C 0.100 3.900 11 C 0.035 3.965 12 N -0.579 5.579 13 C 0.515 3.485 14 O -0.513 6.513 15 C 0.510 3.490 16 O -0.523 6.523 17 N -0.683 5.683 18 C 0.125 3.875 19 C -0.106 4.106 20 C -0.011 4.011 21 C -0.532 4.532 22 H 0.033 0.967 23 C 0.000 4.000 24 N -0.953 5.953 25 Si 0.952 3.048 26 H -0.267 1.267 27 H -0.289 1.289 28 H -0.240 1.240 29 H 0.030 0.970 30 H 0.046 0.954 31 H 0.058 0.942 32 H 0.113 0.887 33 H 0.070 0.930 34 H 0.102 0.898 35 H 0.066 0.934 36 H 0.036 0.964 37 H 0.070 0.930 38 H 0.080 0.920 39 H 0.070 0.930 40 H 0.121 0.879 41 H 0.095 0.905 42 H 0.172 0.828 43 H 0.419 0.581 44 H 0.076 0.924 45 H 0.078 0.922 46 H 0.062 0.938 47 H 0.061 0.939 48 H 0.026 0.974 49 H 0.025 0.975 50 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.944 11.475 28.741 31.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.157 4.157 3 C 0.029 3.971 4 H 0.141 0.859 5 C 0.300 3.700 6 O -0.454 6.454 7 N -0.330 5.330 8 C -0.027 4.027 9 C -0.216 4.216 10 C -0.022 4.022 11 C -0.085 4.085 12 N -0.315 5.315 13 C 0.298 3.702 14 O -0.389 6.389 15 C 0.291 3.709 16 O -0.403 6.403 17 N -0.334 5.334 18 C 0.002 3.998 19 C -0.144 4.144 20 C -0.049 4.049 21 C -0.570 4.570 22 H 0.051 0.949 23 C -0.197 4.197 24 N -0.594 5.594 25 Si 0.775 3.225 26 H -0.192 1.192 27 H -0.215 1.215 28 H -0.163 1.163 29 H 0.049 0.951 30 H 0.065 0.935 31 H 0.077 0.923 32 H 0.131 0.869 33 H 0.088 0.912 34 H 0.120 0.880 35 H 0.084 0.916 36 H 0.056 0.944 37 H 0.089 0.911 38 H 0.099 0.901 39 H 0.088 0.912 40 H 0.139 0.861 41 H 0.113 0.887 42 H 0.188 0.812 43 H 0.256 0.744 44 H 0.094 0.906 45 H 0.097 0.903 46 H 0.081 0.919 47 H 0.079 0.921 48 H 0.044 0.956 49 H 0.044 0.956 50 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 7.846 11.384 29.103 32.220 hybrid contribution -0.194 -0.316 -0.550 0.663 sum 7.652 11.068 28.553 31.565 Atomic orbital electron populations 1.21715 0.95696 1.01968 0.99346 1.22034 0.96844 0.92437 1.04337 1.21681 1.00853 0.93984 0.80572 0.85906 1.20331 0.77789 0.81489 0.90368 1.90709 1.58597 1.66246 1.29829 1.47509 1.59497 1.16843 1.09193 1.21671 0.98674 0.96975 0.85345 1.22031 0.97687 0.99677 1.02199 1.22064 1.00086 0.98114 0.81982 1.23913 1.02325 0.76815 1.05469 1.48042 1.61629 1.08801 1.13009 1.19931 0.78744 0.87127 0.84407 1.90759 1.51845 1.13966 1.82321 1.20152 0.78515 0.87348 0.84856 1.90260 1.53656 1.13702 1.82693 1.45912 1.64987 1.12041 1.10473 1.21580 1.01182 0.95021 0.82007 1.21526 1.01405 0.97703 0.93777 1.19458 0.96850 0.95706 0.92836 1.21502 1.45371 0.93858 0.96310 0.94894 1.26070 0.94412 1.03200 0.96014 1.70073 1.48440 1.36655 1.04224 0.85637 0.78350 0.79542 0.78991 1.19198 1.21509 1.16338 0.95101 0.93472 0.92322 0.86905 0.91169 0.87984 0.91581 0.94439 0.91054 0.90119 0.91206 0.86076 0.88703 0.81184 0.74405 0.90558 0.90333 0.91902 0.92054 0.95575 0.95624 0.92615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.94 8.47 71.98 0.61 -2.33 16 2 C -0.12 -2.47 4.91 30.59 0.15 -2.32 16 3 C 0.13 2.46 3.38 44.06 0.15 2.61 16 4 H 0.12 1.87 8.14 -2.39 -0.02 1.85 16 5 C 0.51 10.44 5.89 87.79 0.52 10.95 16 6 O -0.57 -15.46 15.52 -3.02 -0.05 -15.50 16 7 N -0.60 -8.99 2.80 -825.44 -2.32 -11.31 16 8 C 0.10 1.19 5.92 86.38 0.51 1.70 16 9 C -0.16 -1.59 10.23 71.99 0.74 -0.85 16 10 C 0.10 1.04 6.51 86.70 0.56 1.61 16 11 C 0.03 0.44 6.41 86.39 0.55 0.99 16 12 N -0.58 -9.94 2.77 -799.88 -2.22 -12.16 16 13 C 0.51 10.61 6.38 87.27 0.56 11.16 16 14 O -0.51 -12.00 10.90 -3.24 -0.04 -12.03 16 15 C 0.51 11.11 7.82 87.27 0.68 11.79 16 16 O -0.52 -11.94 13.07 -3.22 -0.04 -11.98 16 17 N -0.68 -15.41 5.55 -464.41 -2.58 -17.99 16 18 C 0.12 3.22 5.67 86.38 0.49 3.71 16 19 C -0.11 -3.50 5.27 30.60 0.16 -3.34 16 20 C -0.01 -0.45 4.04 29.85 0.12 -0.32 16 21 C -0.53 -29.35 9.66 25.60 0.25 -29.10 16 22 H 0.03 2.00 7.99 -2.91 -0.02 1.98 16 23 C 0.00 -0.03 5.47 84.66 0.46 0.44 16 24 N -0.95 -58.87 13.96 21.45 0.30 -58.57 16 25 Si 0.95 42.53 27.47 68.60 1.88 44.41 16 26 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 27 H -0.29 -12.89 7.11 99.48 0.71 -12.18 16 28 H -0.24 -9.71 6.54 99.48 0.65 -9.06 16 29 H 0.03 0.74 7.34 -2.39 -0.02 0.72 16 30 H 0.05 1.12 5.35 -2.38 -0.01 1.11 16 31 H 0.06 1.30 8.14 -2.39 -0.02 1.29 16 32 H 0.11 2.47 5.65 -12.18 -0.07 2.40 16 33 H 0.07 1.48 7.93 -2.39 -0.02 1.46 16 34 H 0.10 0.78 8.01 -2.39 -0.02 0.76 16 35 H 0.07 1.14 7.10 -2.39 -0.02 1.13 16 36 H 0.04 0.54 8.14 -2.39 -0.02 0.52 16 37 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 38 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 39 H 0.07 0.80 8.14 -2.38 -0.02 0.78 16 40 H 0.12 0.56 8.07 -2.39 -0.02 0.54 16 41 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 42 H 0.17 2.55 3.79 -78.15 -0.30 2.25 16 43 H 0.42 8.86 7.96 -92.71 -0.74 8.13 16 44 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 45 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 46 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 47 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 48 H 0.03 1.08 7.20 -2.39 -0.02 1.06 16 49 H 0.03 1.04 7.57 -2.38 -0.02 1.02 16 50 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 Total: -1.00 -70.21 390.64 1.28 -68.94 By element: Atomic # 1 Polarization: 19.67 SS G_CDS: -0.19 Total: 19.49 kcal Atomic # 6 Polarization: 0.19 SS G_CDS: 6.51 Total: 6.70 kcal Atomic # 7 Polarization: -93.21 SS G_CDS: -6.81 Total: -100.02 kcal Atomic # 8 Polarization: -39.39 SS G_CDS: -0.12 Total: -39.51 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 1.88 Total: 44.41 kcal Total: -70.21 1.28 -68.94 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343152884.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.508 kcal (2) G-P(sol) polarization free energy of solvation -70.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds