Wall clock time and date at job start Tue Mar 31 2020 23:44:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.46956 * 2 1 4 4 H 1.09006 * 109.47377 * 55.00330 * 3 2 1 5 5 C 1.53004 * 109.47564 * 295.00226 * 3 2 1 6 6 C 1.50704 * 109.47249 * 175.00187 * 3 2 1 7 7 O 1.21286 * 119.99473 * 23.97295 * 6 3 2 8 8 N 1.34773 * 120.00102 * 203.97039 * 6 3 2 9 9 C 1.46930 * 120.62647 * 175.31417 * 8 6 3 10 10 C 1.53193 * 108.77361 * 233.63120 * 9 8 6 11 11 C 1.53037 * 109.31377 * 305.36869 * 10 9 8 12 12 C 1.53035 * 109.54091 * 61.36787 * 11 10 9 13 13 H 1.08998 * 109.52732 * 58.60196 * 12 11 10 14 14 C 1.50704 * 109.50195 * 178.68446 * 12 11 10 15 15 O 1.21276 * 119.99923 * 119.83290 * 14 12 11 16 16 N 1.34780 * 119.99432 * 299.83791 * 14 12 11 17 17 C 1.46498 * 119.99652 * 180.02562 * 16 14 12 18 18 C 1.50693 * 109.47425 * 179.97438 * 17 16 14 19 19 O 1.21299 * 119.99552 * 0.02562 * 18 17 16 20 20 N 1.34775 * 120.00620 * 179.97438 * 18 17 16 21 21 C 1.37092 * 120.00269 * 180.02562 * 20 18 17 22 22 H 1.08002 * 120.00158 * 359.97438 * 21 20 18 23 23 C 1.38952 * 119.99993 * 180.02562 * 21 20 18 24 24 N 1.31412 * 120.00054 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 120.00064 * 179.97438 * 23 21 20 26 26 H 1.48493 * 109.47133 * 179.97438 * 25 23 21 27 27 H 1.48502 * 109.47179 * 299.99793 * 25 23 21 28 28 H 1.48504 * 109.47053 * 59.99565 * 25 23 21 29 29 C 1.46923 * 120.63487 * 355.34249 * 8 6 3 30 30 H 1.09005 * 109.47043 * 299.99609 * 1 2 3 31 31 H 1.08992 * 109.47170 * 59.99769 * 1 2 3 32 32 H 1.08997 * 109.46720 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.46667 * 240.00120 * 2 1 3 34 34 H 1.09000 * 109.47283 * 120.00506 * 2 1 3 35 35 H 1.09000 * 109.47311 * 186.26519 * 5 3 2 36 36 H 1.08998 * 109.46967 * 306.26970 * 5 3 2 37 37 H 1.09001 * 109.46797 * 66.26581 * 5 3 2 38 38 H 1.08990 * 109.58717 * 353.42022 * 9 8 6 39 39 H 1.08997 * 109.58464 * 113.70752 * 9 8 6 40 40 H 1.08999 * 109.49826 * 65.32318 * 10 9 8 41 41 H 1.09001 * 109.49504 * 185.38363 * 10 9 8 42 42 H 1.09006 * 109.46260 * 301.34341 * 11 10 9 43 43 H 1.09005 * 109.46309 * 181.39010 * 11 10 9 44 44 H 0.96991 * 120.00070 * 359.97438 * 16 14 12 45 45 H 1.09002 * 109.47444 * 59.99622 * 17 16 14 46 46 H 1.09008 * 109.47029 * 300.00103 * 17 16 14 47 47 H 0.97006 * 119.99503 * 0.02562 * 20 18 17 48 48 H 0.97001 * 119.99510 * 0.02562 * 24 23 21 49 49 H 1.09003 * 109.58473 * 6.57612 * 29 8 6 50 50 H 1.08998 * 109.70150 * 246.22874 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 1.6352 2.1266 -1.3073 6 6 3.5419 1.4443 0.1238 7 8 4.1802 0.4733 -0.2237 8 7 4.1758 2.5250 0.6205 9 6 5.6280 2.5044 0.8430 10 6 5.9104 2.9083 2.2935 11 6 5.2495 4.2584 2.5808 12 6 3.7348 4.1357 2.3998 13 1 3.3484 3.3699 3.0722 14 6 3.0819 5.4571 2.7142 15 8 2.4348 6.0312 1.8642 16 7 3.2172 6.0007 3.9400 17 6 2.5821 7.2849 4.2459 18 6 2.8840 7.6677 5.6718 19 8 3.5635 6.9396 6.3643 20 7 2.4001 8.8196 6.1773 21 6 2.6753 9.1680 7.4744 22 1 3.2795 8.5194 8.0912 23 6 2.1759 10.3553 7.9957 24 7 1.4402 11.1443 7.2453 25 14 2.5502 10.8298 9.7632 26 1 1.9069 12.1318 10.0730 27 1 2.0224 9.7861 10.6783 28 1 4.0195 10.9488 9.9432 29 6 3.4278 3.7458 0.9505 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 2.0916 3.1153 -1.3565 36 1 1.9752 1.5270 -2.1516 37 1 0.5503 2.2250 -1.3451 38 1 6.0112 1.5003 0.6621 39 1 6.1115 3.2077 0.1650 40 1 5.5040 2.1537 2.9670 41 1 6.9866 2.9898 2.4455 42 1 5.6382 5.0072 1.8907 43 1 5.4695 4.5599 3.6050 44 1 3.7345 5.5413 4.6199 45 1 1.5036 7.1974 4.1142 46 1 2.9692 8.0509 3.5739 47 1 1.8570 9.4020 5.6234 48 1 1.2455 10.8977 6.3276 49 1 2.3593 3.5606 0.8404 50 1 3.7293 4.5531 0.2831 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343519364.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:44:17 Heat of formation + Delta-G solvation = -132.594903 kcal Electronic energy + Delta-G solvation = -29871.125639 eV Core-core repulsion = 25704.299201 eV Total energy + Delta-G solvation = -4166.826438 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.95152 -39.80643 -38.47492 -37.39799 -35.75444 -34.85833 -34.03323 -33.21023 -31.79937 -31.29180 -29.93150 -27.86159 -26.32536 -25.04861 -24.74665 -23.73208 -22.44868 -20.81622 -20.11164 -20.01107 -19.11533 -18.16556 -17.82941 -17.18483 -16.52597 -15.87715 -15.78141 -15.64135 -15.39736 -15.01277 -14.75495 -14.65971 -14.62272 -14.18562 -13.94098 -13.78651 -13.61543 -13.38608 -13.29721 -12.97150 -12.71888 -12.53380 -12.45749 -12.12369 -12.03949 -11.96605 -11.79532 -11.44533 -11.38502 -11.27786 -11.10726 -11.06972 -11.06308 -10.92646 -10.29133 -10.03880 -9.86647 -9.84571 -9.73713 -9.02064 -8.94399 -8.76058 -8.22913 -6.90895 -4.05834 2.34939 2.58045 2.59330 3.18756 3.19781 3.28172 3.47531 3.61815 4.10105 4.15897 4.30052 4.41204 4.42820 4.51006 4.61640 4.63159 4.71073 4.86395 4.89170 5.00068 5.05663 5.10586 5.13138 5.15694 5.23009 5.29060 5.42428 5.46753 5.48253 5.55093 5.56329 5.62059 5.66015 5.67473 5.73041 5.75226 5.75491 5.77689 5.93332 5.93933 6.01603 6.19124 6.45079 7.07108 7.57284 7.61724 7.89375 7.90879 8.20384 8.40085 8.56950 9.27328 9.60657 10.51751 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.019470 B = 0.002038 C = 0.001942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.798501 B =13734.074204 C =14411.413977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.105 4.105 3 C -0.114 4.114 4 H 0.095 0.905 5 C -0.144 4.144 6 C 0.523 3.477 7 O -0.542 6.542 8 N -0.612 5.612 9 C 0.108 3.892 10 C -0.132 4.132 11 C -0.114 4.114 12 C -0.122 4.122 13 H 0.103 0.897 14 C 0.519 3.481 15 O -0.548 6.548 16 N -0.703 5.703 17 C 0.108 3.892 18 C 0.429 3.571 19 O -0.591 6.591 20 N -0.560 5.560 21 C -0.387 4.387 22 H 0.102 0.898 23 C -0.005 4.005 24 N -0.892 5.892 25 Si 1.092 2.908 26 H -0.278 1.278 27 H -0.282 1.282 28 H -0.282 1.282 29 C 0.126 3.874 30 H 0.055 0.945 31 H 0.058 0.942 32 H 0.057 0.943 33 H 0.072 0.928 34 H 0.064 0.936 35 H 0.061 0.939 36 H 0.062 0.938 37 H 0.071 0.929 38 H 0.093 0.907 39 H 0.068 0.932 40 H 0.070 0.930 41 H 0.082 0.918 42 H 0.073 0.927 43 H 0.078 0.922 44 H 0.412 0.588 45 H 0.084 0.916 46 H 0.084 0.916 47 H 0.379 0.621 48 H 0.263 0.737 49 H 0.096 0.904 50 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.250 -16.857 -14.823 22.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.143 4.143 3 C -0.135 4.135 4 H 0.113 0.887 5 C -0.202 4.202 6 C 0.311 3.689 7 O -0.419 6.419 8 N -0.345 5.345 9 C -0.015 4.015 10 C -0.170 4.170 11 C -0.152 4.152 12 C -0.144 4.144 13 H 0.121 0.879 14 C 0.304 3.696 15 O -0.426 6.426 16 N -0.357 5.357 17 C -0.019 4.019 18 C 0.215 3.785 19 O -0.477 6.477 20 N -0.196 5.196 21 C -0.516 4.516 22 H 0.120 0.880 23 C -0.209 4.209 24 N -0.530 5.530 25 Si 0.918 3.082 26 H -0.203 1.203 27 H -0.209 1.209 28 H -0.209 1.209 29 C 0.003 3.997 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.091 0.909 34 H 0.083 0.917 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.090 0.910 38 H 0.111 0.889 39 H 0.087 0.913 40 H 0.089 0.911 41 H 0.100 0.900 42 H 0.092 0.908 43 H 0.097 0.903 44 H 0.250 0.750 45 H 0.102 0.898 46 H 0.102 0.898 47 H 0.213 0.787 48 H 0.075 0.925 49 H 0.114 0.886 50 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 2.325 -16.240 -13.958 21.540 hybrid contribution 0.151 -0.828 -1.025 1.326 sum 2.476 -17.068 -14.983 22.846 Atomic orbital electron populations 1.21836 0.95249 1.01949 1.02108 1.21366 0.95666 0.93977 1.03269 1.21417 0.91688 0.99468 1.00965 0.88742 1.21808 1.02413 1.00468 0.95467 1.20734 0.90291 0.81660 0.76171 1.90674 1.68245 1.34016 1.49000 1.48156 1.08402 1.13992 1.63981 1.21645 0.80208 1.03405 0.96195 1.21912 1.01473 0.97118 0.96481 1.21558 0.92152 0.98122 1.03382 1.21668 0.97679 0.95957 0.99132 0.87901 1.20302 0.80690 0.86592 0.81981 1.90698 1.41657 1.63365 1.46915 1.45704 1.53630 1.22505 1.13867 1.20959 0.98746 0.86180 0.96065 1.19646 0.86318 0.84137 0.88424 1.90506 1.43508 1.52760 1.60968 1.41868 1.45817 1.18642 1.13293 1.20567 1.34587 1.08364 0.88102 0.88040 1.26614 0.94626 0.92105 1.07567 1.70907 1.35111 1.37943 1.09001 0.83118 0.76564 0.76597 0.71954 1.20261 1.20854 1.20860 1.21580 0.97497 0.86616 0.94048 0.92578 0.92305 0.92431 0.90933 0.91704 0.91963 0.91873 0.90981 0.88878 0.91338 0.91118 0.89969 0.90845 0.90334 0.74990 0.89835 0.89821 0.78714 0.92519 0.88597 0.89884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.67 37.16 0.36 -0.66 16 2 C -0.10 -0.87 4.83 -26.73 -0.13 -1.00 16 3 C -0.11 -0.97 1.86 -91.77 -0.17 -1.14 16 4 H 0.09 0.73 6.53 -51.93 -0.34 0.39 16 5 C -0.14 -1.07 8.52 37.16 0.32 -0.75 16 6 C 0.52 5.68 6.81 -10.98 -0.07 5.61 16 7 O -0.54 -7.60 15.61 5.55 0.09 -7.51 16 8 N -0.61 -5.86 2.97 -172.77 -0.51 -6.37 16 9 C 0.11 0.93 6.42 -3.71 -0.02 0.91 16 10 C -0.13 -1.00 6.08 -26.61 -0.16 -1.17 16 11 C -0.11 -1.00 5.08 -26.69 -0.14 -1.14 16 12 C -0.12 -1.20 2.68 -91.65 -0.25 -1.45 16 13 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 14 C 0.52 6.95 7.16 -10.98 -0.08 6.87 16 15 O -0.55 -8.79 15.92 5.56 0.09 -8.71 16 16 N -0.70 -10.44 5.42 -61.47 -0.33 -10.77 16 17 C 0.11 1.84 6.15 -5.20 -0.03 1.81 16 18 C 0.43 9.40 7.85 -10.99 -0.09 9.31 16 19 O -0.59 -14.63 15.24 5.54 0.08 -14.54 16 20 N -0.56 -13.34 5.28 -10.96 -0.06 -13.39 16 21 C -0.39 -10.35 9.68 -14.93 -0.14 -10.50 16 22 H 0.10 2.86 7.16 -52.49 -0.38 2.48 16 23 C -0.01 -0.14 5.50 -17.47 -0.10 -0.24 16 24 N -0.89 -24.06 13.68 55.50 0.76 -23.30 16 25 Si 1.09 23.17 29.92 -169.99 -5.09 18.09 16 26 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 27 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 28 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 29 C 0.13 1.18 4.38 -3.71 -0.02 1.16 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.35 6.71 -51.93 -0.35 0.00 16 32 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.07 0.66 8.04 -51.93 -0.42 0.24 16 34 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.06 0.47 7.34 -51.93 -0.38 0.09 16 36 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 37 H 0.07 0.45 6.88 -51.93 -0.36 0.09 16 38 H 0.09 0.90 7.03 -51.93 -0.37 0.53 16 39 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 41 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.08 0.71 7.54 -51.93 -0.39 0.32 16 44 H 0.41 6.08 6.85 -40.82 -0.28 5.80 16 45 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 46 H 0.08 1.36 8.14 -51.92 -0.42 0.93 16 47 H 0.38 8.36 6.73 -40.82 -0.27 8.08 16 48 H 0.26 6.81 6.77 -40.82 -0.28 6.54 16 49 H 0.10 0.86 5.14 -51.93 -0.27 0.59 16 50 H 0.08 0.82 7.95 -51.93 -0.41 0.41 16 LS Contribution 398.27 15.07 6.00 6.00 Total: -1.00 -32.82 398.27 -7.62 -40.44 By element: Atomic # 1 Polarization: 20.36 SS G_CDS: -7.93 Total: 12.43 kcal Atomic # 6 Polarization: 8.36 SS G_CDS: -0.72 Total: 7.64 kcal Atomic # 7 Polarization: -53.69 SS G_CDS: -0.14 Total: -53.84 kcal Atomic # 8 Polarization: -31.02 SS G_CDS: 0.26 Total: -30.76 kcal Atomic # 14 Polarization: 23.17 SS G_CDS: -5.09 Total: 18.09 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -32.82 -7.62 -40.44 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343519364.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.155 kcal (2) G-P(sol) polarization free energy of solvation -32.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds