Wall clock time and date at job start Tue Mar 31 2020 23:44:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.46956 * 2 1 4 4 H 1.09006 * 109.47377 * 55.00330 * 3 2 1 5 5 C 1.53004 * 109.47564 * 295.00226 * 3 2 1 6 6 C 1.50704 * 109.47249 * 175.00187 * 3 2 1 7 7 O 1.21286 * 119.99473 * 23.97295 * 6 3 2 8 8 N 1.34773 * 120.00102 * 203.97039 * 6 3 2 9 9 C 1.46930 * 120.62647 * 175.31417 * 8 6 3 10 10 C 1.53193 * 108.77361 * 233.63120 * 9 8 6 11 11 C 1.53037 * 109.31377 * 305.36869 * 10 9 8 12 12 C 1.53035 * 109.54091 * 61.36787 * 11 10 9 13 13 H 1.08998 * 109.52732 * 58.60196 * 12 11 10 14 14 C 1.50704 * 109.50195 * 178.68446 * 12 11 10 15 15 O 1.21276 * 119.99923 * 119.83290 * 14 12 11 16 16 N 1.34780 * 119.99432 * 299.83791 * 14 12 11 17 17 C 1.46498 * 119.99652 * 180.02562 * 16 14 12 18 18 C 1.50693 * 109.47425 * 179.97438 * 17 16 14 19 19 O 1.21299 * 119.99552 * 0.02562 * 18 17 16 20 20 N 1.34775 * 120.00620 * 179.97438 * 18 17 16 21 21 C 1.37092 * 120.00269 * 180.02562 * 20 18 17 22 22 H 1.08002 * 120.00158 * 359.97438 * 21 20 18 23 23 C 1.38952 * 119.99993 * 180.02562 * 21 20 18 24 24 N 1.31412 * 120.00054 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 120.00064 * 179.97438 * 23 21 20 26 26 H 1.48493 * 109.47133 * 179.97438 * 25 23 21 27 27 H 1.48502 * 109.47179 * 299.99793 * 25 23 21 28 28 H 1.48504 * 109.47053 * 59.99565 * 25 23 21 29 29 C 1.46923 * 120.63487 * 355.34249 * 8 6 3 30 30 H 1.09005 * 109.47043 * 299.99609 * 1 2 3 31 31 H 1.08992 * 109.47170 * 59.99769 * 1 2 3 32 32 H 1.08997 * 109.46720 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.46667 * 240.00120 * 2 1 3 34 34 H 1.09000 * 109.47283 * 120.00506 * 2 1 3 35 35 H 1.09000 * 109.47311 * 186.26519 * 5 3 2 36 36 H 1.08998 * 109.46967 * 306.26970 * 5 3 2 37 37 H 1.09001 * 109.46797 * 66.26581 * 5 3 2 38 38 H 1.08990 * 109.58717 * 353.42022 * 9 8 6 39 39 H 1.08997 * 109.58464 * 113.70752 * 9 8 6 40 40 H 1.08999 * 109.49826 * 65.32318 * 10 9 8 41 41 H 1.09001 * 109.49504 * 185.38363 * 10 9 8 42 42 H 1.09006 * 109.46260 * 301.34341 * 11 10 9 43 43 H 1.09005 * 109.46309 * 181.39010 * 11 10 9 44 44 H 0.96991 * 120.00070 * 359.97438 * 16 14 12 45 45 H 1.09002 * 109.47444 * 59.99622 * 17 16 14 46 46 H 1.09008 * 109.47029 * 300.00103 * 17 16 14 47 47 H 0.97006 * 119.99503 * 0.02562 * 20 18 17 48 48 H 0.97001 * 119.99510 * 0.02562 * 24 23 21 49 49 H 1.09003 * 109.58473 * 6.57612 * 29 8 6 50 50 H 1.08998 * 109.70150 * 246.22874 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 1.6352 2.1266 -1.3073 6 6 3.5419 1.4443 0.1238 7 8 4.1802 0.4733 -0.2237 8 7 4.1758 2.5250 0.6205 9 6 5.6280 2.5044 0.8430 10 6 5.9104 2.9083 2.2935 11 6 5.2495 4.2584 2.5808 12 6 3.7348 4.1357 2.3998 13 1 3.3484 3.3699 3.0722 14 6 3.0819 5.4571 2.7142 15 8 2.4348 6.0312 1.8642 16 7 3.2172 6.0007 3.9400 17 6 2.5821 7.2849 4.2459 18 6 2.8840 7.6677 5.6718 19 8 3.5635 6.9396 6.3643 20 7 2.4001 8.8196 6.1773 21 6 2.6753 9.1680 7.4744 22 1 3.2795 8.5194 8.0912 23 6 2.1759 10.3553 7.9957 24 7 1.4402 11.1443 7.2453 25 14 2.5502 10.8298 9.7632 26 1 1.9069 12.1318 10.0730 27 1 2.0224 9.7861 10.6783 28 1 4.0195 10.9488 9.9432 29 6 3.4278 3.7458 0.9505 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 2.0916 3.1153 -1.3565 36 1 1.9752 1.5270 -2.1516 37 1 0.5503 2.2250 -1.3451 38 1 6.0112 1.5003 0.6621 39 1 6.1115 3.2077 0.1650 40 1 5.5040 2.1537 2.9670 41 1 6.9866 2.9898 2.4455 42 1 5.6382 5.0072 1.8907 43 1 5.4695 4.5599 3.6050 44 1 3.7345 5.5413 4.6199 45 1 1.5036 7.1974 4.1142 46 1 2.9692 8.0509 3.5739 47 1 1.8570 9.4020 5.6234 48 1 1.2455 10.8977 6.3276 49 1 2.3593 3.5606 0.8404 50 1 3.7293 4.5531 0.2831 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343519364.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:44:16 Heat of formation + Delta-G solvation = -154.814816 kcal Electronic energy + Delta-G solvation = -29872.089166 eV Core-core repulsion = 25704.299201 eV Total energy + Delta-G solvation = -4167.789965 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.83868 -40.97014 -40.11336 -38.29427 -36.63143 -36.47558 -35.45174 -34.06925 -33.24820 -32.55345 -30.54057 -29.30298 -27.04808 -26.44235 -25.69224 -24.85566 -23.18851 -21.79304 -21.59469 -21.07597 -20.08069 -19.88595 -18.92019 -18.25547 -17.56448 -17.16232 -17.00920 -16.82351 -16.48749 -16.25495 -15.89881 -15.65551 -15.50026 -15.45650 -15.11402 -14.98272 -14.57546 -14.25999 -14.17530 -14.05250 -13.72066 -13.53131 -13.43543 -13.39089 -13.04521 -12.79950 -12.70034 -12.62867 -12.53228 -12.18744 -12.01518 -11.94760 -11.91804 -11.80693 -11.69662 -11.59371 -11.58045 -10.94474 -10.69478 -10.61645 -10.26811 -10.16341 -9.76888 -8.96195 -6.12292 1.46067 1.50793 1.51498 1.56099 1.73562 1.83723 1.89508 2.10773 2.43920 2.96037 3.13126 3.32951 3.52645 3.64589 3.70168 3.77861 3.93716 3.96533 4.01716 4.10078 4.17267 4.25910 4.34657 4.35844 4.43739 4.47906 4.54154 4.57670 4.68320 4.73353 4.77850 4.80012 4.92723 4.95020 4.96310 5.04686 5.09594 5.16307 5.18281 5.26848 5.32462 5.41796 5.48312 5.57774 5.90087 6.26851 6.42644 6.46491 6.62858 7.05756 7.09033 7.34718 7.75011 8.50587 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.019470 B = 0.002038 C = 0.001942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.798501 B =13734.074204 C =14411.413977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.103 4.103 3 C -0.112 4.112 4 H 0.106 0.894 5 C -0.141 4.141 6 C 0.518 3.482 7 O -0.579 6.579 8 N -0.608 5.608 9 C 0.104 3.896 10 C -0.122 4.122 11 C -0.112 4.112 12 C -0.113 4.113 13 H 0.116 0.884 14 C 0.525 3.475 15 O -0.572 6.572 16 N -0.706 5.706 17 C 0.121 3.879 18 C 0.436 3.564 19 O -0.618 6.618 20 N -0.574 5.574 21 C -0.411 4.411 22 H 0.081 0.919 23 C -0.040 4.040 24 N -0.912 5.912 25 Si 1.134 2.866 26 H -0.275 1.275 27 H -0.271 1.271 28 H -0.271 1.271 29 C 0.130 3.870 30 H 0.059 0.941 31 H 0.066 0.934 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.053 0.947 35 H 0.060 0.940 36 H 0.056 0.944 37 H 0.088 0.912 38 H 0.082 0.918 39 H 0.078 0.922 40 H 0.068 0.932 41 H 0.099 0.901 42 H 0.073 0.927 43 H 0.077 0.923 44 H 0.414 0.586 45 H 0.097 0.903 46 H 0.096 0.904 47 H 0.387 0.613 48 H 0.261 0.739 49 H 0.103 0.897 50 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.076 -17.069 -15.021 22.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.141 4.141 3 C -0.133 4.133 4 H 0.124 0.876 5 C -0.198 4.198 6 C 0.308 3.692 7 O -0.459 6.459 8 N -0.340 5.340 9 C -0.018 4.018 10 C -0.160 4.160 11 C -0.150 4.150 12 C -0.135 4.135 13 H 0.134 0.866 14 C 0.312 3.688 15 O -0.451 6.451 16 N -0.360 5.360 17 C -0.007 4.007 18 C 0.224 3.776 19 O -0.506 6.506 20 N -0.211 5.211 21 C -0.540 4.540 22 H 0.099 0.901 23 C -0.239 4.239 24 N -0.551 5.551 25 Si 0.953 3.047 26 H -0.200 1.200 27 H -0.196 1.196 28 H -0.196 1.196 29 C 0.007 3.993 30 H 0.078 0.922 31 H 0.085 0.915 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.072 0.928 35 H 0.079 0.921 36 H 0.076 0.924 37 H 0.107 0.893 38 H 0.100 0.900 39 H 0.096 0.904 40 H 0.087 0.913 41 H 0.117 0.883 42 H 0.092 0.908 43 H 0.096 0.904 44 H 0.252 0.748 45 H 0.115 0.885 46 H 0.114 0.886 47 H 0.222 0.778 48 H 0.072 0.928 49 H 0.121 0.879 50 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 2.153 -16.457 -14.181 21.830 hybrid contribution 0.246 -0.834 -1.043 1.358 sum 2.399 -17.291 -15.223 23.162 Atomic orbital electron populations 1.21812 0.93714 1.02504 1.02698 1.21331 0.96920 0.93667 1.02153 1.21467 0.90026 0.99849 1.01986 0.87606 1.21804 1.03437 1.00048 0.94555 1.21182 0.91239 0.81266 0.75522 1.90656 1.69172 1.35355 1.50731 1.48197 1.08825 1.13736 1.63251 1.21739 0.79763 1.03097 0.97214 1.21848 1.02438 0.96216 0.95495 1.21556 0.91253 0.98776 1.03379 1.21647 0.98188 0.94031 0.99637 0.86625 1.20795 0.79947 0.87214 0.80868 1.90694 1.42734 1.64286 1.47406 1.45733 1.53819 1.21834 1.14584 1.20785 0.99793 0.87654 0.92458 1.20467 0.84328 0.82814 0.90006 1.90488 1.44248 1.53372 1.62447 1.41910 1.46776 1.19646 1.12817 1.20562 1.35316 1.08721 0.89420 0.90132 1.27873 0.93779 0.91750 1.10469 1.70975 1.36248 1.38549 1.09295 0.82625 0.77113 0.76615 0.68321 1.20012 1.19622 1.19624 1.21556 0.97877 0.86293 0.93587 0.92168 0.91453 0.91981 0.92163 0.92777 0.92050 0.92441 0.89349 0.89985 0.90376 0.91299 0.88270 0.90787 0.90404 0.74811 0.88527 0.88563 0.77848 0.92800 0.87936 0.90142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 9.67 71.98 0.70 -1.05 16 2 C -0.10 -1.63 4.83 30.59 0.15 -1.49 16 3 C -0.11 -1.77 1.86 -11.54 -0.02 -1.79 16 4 H 0.11 1.42 6.53 -2.38 -0.02 1.41 16 5 C -0.14 -1.88 8.52 71.98 0.61 -1.27 16 6 C 0.52 10.91 6.81 87.66 0.60 11.51 16 7 O -0.58 -16.32 15.61 -3.05 -0.05 -16.37 16 8 N -0.61 -10.87 2.97 -818.91 -2.43 -13.30 16 9 C 0.10 1.67 6.42 86.36 0.55 2.22 16 10 C -0.12 -1.62 6.08 30.67 0.19 -1.43 16 11 C -0.11 -1.72 5.08 30.62 0.16 -1.57 16 12 C -0.11 -1.99 2.68 -11.46 -0.03 -2.02 16 13 H 0.12 1.81 8.14 -2.39 -0.02 1.79 16 14 C 0.52 12.99 7.16 87.66 0.63 13.62 16 15 O -0.57 -17.19 15.92 -3.02 -0.05 -17.24 16 16 N -0.71 -19.70 5.42 -466.79 -2.53 -22.23 16 17 C 0.12 3.92 6.15 85.63 0.53 4.45 16 18 C 0.44 18.87 7.85 87.66 0.69 19.55 16 19 O -0.62 -30.40 15.24 -3.09 -0.05 -30.44 16 20 N -0.57 -27.33 5.28 -306.99 -1.62 -28.95 16 21 C -0.41 -22.13 9.68 84.04 0.81 -21.32 16 22 H 0.08 4.61 7.16 -2.91 -0.02 4.59 16 23 C -0.04 -2.05 5.50 84.93 0.47 -1.58 16 24 N -0.91 -49.08 13.68 21.66 0.30 -48.78 16 25 Si 1.13 46.09 29.92 68.60 2.05 48.14 16 26 H -0.28 -11.01 7.11 99.48 0.71 -10.30 16 27 H -0.27 -10.42 7.11 99.48 0.71 -9.72 16 28 H -0.27 -10.42 7.11 99.48 0.71 -9.72 16 29 C 0.13 2.19 4.38 86.36 0.38 2.57 16 30 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 31 H 0.07 0.67 6.71 -2.39 -0.02 0.65 16 32 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.06 1.10 8.04 -2.39 -0.02 1.08 16 34 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.06 0.83 7.34 -2.39 -0.02 0.81 16 36 H 0.06 0.83 8.14 -2.39 -0.02 0.82 16 37 H 0.09 0.89 6.88 -2.39 -0.02 0.88 16 38 H 0.08 1.54 7.03 -2.39 -0.02 1.53 16 39 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 41 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 42 H 0.07 1.16 8.14 -2.38 -0.02 1.14 16 43 H 0.08 1.25 7.54 -2.38 -0.02 1.24 16 44 H 0.41 11.57 6.85 -92.71 -0.63 10.93 16 45 H 0.10 2.94 8.14 -2.39 -0.02 2.92 16 46 H 0.10 2.94 8.14 -2.38 -0.02 2.92 16 47 H 0.39 17.05 6.73 -92.70 -0.62 16.43 16 48 H 0.26 13.55 6.77 -92.71 -0.63 12.93 16 49 H 0.10 1.61 5.14 -2.39 -0.01 1.60 16 50 H 0.08 1.45 7.95 -2.39 -0.02 1.43 16 Total: -1.00 -70.03 398.27 1.87 -68.16 By element: Atomic # 1 Polarization: 40.77 SS G_CDS: -0.15 Total: 40.62 kcal Atomic # 6 Polarization: 14.00 SS G_CDS: 6.40 Total: 20.40 kcal Atomic # 7 Polarization: -106.97 SS G_CDS: -6.29 Total: -113.26 kcal Atomic # 8 Polarization: -63.91 SS G_CDS: -0.14 Total: -64.05 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 2.05 Total: 48.14 kcal Total: -70.03 1.87 -68.16 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343519364.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.659 kcal (2) G-P(sol) polarization free energy of solvation -70.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds