Wall clock time and date at job start Tue Mar 31 2020 22:52:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47049 * 2 1 4 4 C 1.53003 * 109.46880 * 240.00096 * 2 1 3 5 5 O 1.45199 * 109.47000 * 119.99986 * 2 1 3 6 6 C 1.34636 * 117.00242 * 60.00256 * 5 2 1 7 7 O 1.21507 * 119.99635 * 359.97438 * 6 5 2 8 8 N 1.34771 * 120.00046 * 179.97438 * 6 5 2 9 9 C 1.50540 * 126.96187 * 359.09896 * 8 6 5 10 10 C 1.54390 * 103.47311 * 218.74961 * 9 8 6 11 11 H 1.09000 * 117.61625 * 197.19021 * 10 9 8 12 12 C 1.54278 * 106.22109 * 337.71896 * 10 9 8 13 13 H 1.09002 * 121.81813 * 221.51872 * 12 10 9 14 14 C 1.48146 * 127.83696 * 180.02562 * 8 6 5 15 15 C 1.53002 * 59.72492 * 113.48880 * 12 10 9 16 16 H 1.09000 * 117.40440 * 252.33666 * 15 12 10 17 17 N 1.46490 * 117.44572 * 107.64741 * 15 12 10 18 18 C 1.34773 * 120.00326 * 135.76145 * 17 15 12 19 19 O 1.21591 * 120.00000 * 359.97438 * 18 17 15 20 20 N 1.34777 * 120.00462 * 179.97438 * 18 17 15 21 21 C 1.46500 * 120.00376 * 180.02562 * 20 18 17 22 22 C 1.52997 * 109.47473 * 180.02562 * 21 20 18 23 23 C 1.50701 * 109.47212 * 179.97438 * 22 21 20 24 24 H 1.07998 * 120.00129 * 0.02562 * 23 22 21 25 25 C 1.37880 * 119.99861 * 179.97438 * 23 22 21 26 26 N 1.31510 * 119.99913 * 0.02562 * 25 23 22 27 27 Si 1.86797 * 119.99734 * 180.02562 * 25 23 22 28 28 H 1.48499 * 109.47094 * 90.00289 * 27 25 23 29 29 H 1.48505 * 109.47195 * 210.00171 * 27 25 23 30 30 H 1.48493 * 109.47449 * 330.00136 * 27 25 23 31 31 H 1.08995 * 109.47552 * 299.99811 * 1 2 3 32 32 H 1.08997 * 109.47394 * 60.00380 * 1 2 3 33 33 H 1.09001 * 109.47297 * 180.02562 * 1 2 3 34 34 H 1.09005 * 109.47261 * 180.02562 * 3 2 1 35 35 H 1.09003 * 109.47111 * 299.99891 * 3 2 1 36 36 H 1.08994 * 109.47309 * 59.99645 * 3 2 1 37 37 H 1.09003 * 109.47308 * 299.99566 * 4 2 1 38 38 H 1.08995 * 109.47161 * 60.00287 * 4 2 1 39 39 H 1.09002 * 109.46981 * 180.02562 * 4 2 1 40 40 H 1.08998 * 109.09695 * 101.20926 * 9 8 6 41 41 H 1.08993 * 112.79785 * 338.06912 * 9 8 6 42 42 H 1.08999 * 110.41054 * 21.62354 * 14 8 6 43 43 H 1.09003 * 110.40605 * 259.19546 * 14 8 6 44 44 H 0.97004 * 120.00364 * 315.76138 * 17 15 12 45 45 H 0.97004 * 120.00228 * 0.02562 * 20 18 17 46 46 H 1.09002 * 109.47129 * 59.99747 * 21 20 18 47 47 H 1.08998 * 109.46845 * 300.00553 * 21 20 18 48 48 H 1.09002 * 109.47153 * 59.99757 * 22 21 20 49 49 H 1.09001 * 109.46832 * 299.99948 * 22 21 20 50 50 H 0.97002 * 119.99768 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2493 5 8 2.0139 -0.6845 1.1856 6 6 1.6522 -1.9723 1.3383 7 8 0.9509 -2.5094 0.5040 8 7 2.0680 -2.6656 2.4166 9 6 2.9501 -2.1656 3.5294 10 6 3.8565 -3.3759 3.8414 11 1 4.3895 -3.3761 4.7922 12 6 3.1030 -4.6216 3.3309 13 1 3.0747 -5.5500 3.9013 14 6 1.7774 -4.0781 2.7563 15 6 4.4099 -4.1843 2.6662 16 1 4.3433 -3.7382 1.6739 17 7 5.5991 -5.0040 2.9111 18 6 6.4193 -5.3234 1.8905 19 8 6.1719 -4.9316 0.7663 20 7 7.5137 -6.0770 2.1158 21 6 8.4055 -6.4237 1.0065 22 6 9.5612 -7.2793 1.5294 23 6 10.4782 -7.6364 0.3881 24 1 10.2590 -7.2877 -0.6103 25 6 11.5977 -8.4075 0.6187 26 7 11.8650 -8.8317 1.8345 27 14 12.7348 -8.8496 -0.7959 28 1 13.7848 -7.8082 -0.9310 29 1 13.3725 -10.1634 -0.5264 30 1 11.9512 -8.9287 -2.0548 31 1 -0.3634 0.5138 0.8899 32 1 -0.3634 0.5137 -0.8900 33 1 -0.3634 -1.0277 0.0005 34 1 3.1300 1.4425 -0.0005 35 1 1.6766 1.9563 -0.8900 36 1 1.6766 1.9563 0.8899 37 1 1.6766 -1.7490 -1.2493 38 1 1.6766 -0.2074 -2.1392 39 1 3.1299 -0.7217 -1.2491 40 1 2.3311 -1.9217 4.3928 41 1 3.5520 -1.3053 3.2370 42 1 1.4946 -4.6336 1.8622 43 1 0.9875 -4.1341 3.5053 44 1 5.7963 -5.3168 3.8078 45 1 7.7109 -6.3899 3.0126 46 1 8.8013 -5.5116 0.5598 47 1 7.8497 -6.9846 0.2552 48 1 9.1650 -8.1914 1.9758 49 1 10.1171 -6.7187 2.2809 50 1 12.6524 -9.3745 1.9966 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000366255648.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:52:39 Heat of formation + Delta-G solvation = -99.897903 kcal Electronic energy + Delta-G solvation = -29417.682387 eV Core-core repulsion = 25252.273798 eV Total energy + Delta-G solvation = -4165.408589 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.02505 -41.23442 -40.24832 -37.91508 -36.66899 -35.78774 -35.01840 -34.78973 -33.11077 -31.21295 -29.63703 -28.39604 -28.30619 -27.51029 -26.45181 -23.55088 -22.93043 -22.11654 -21.90103 -21.17774 -20.45897 -19.37056 -19.04249 -18.46449 -17.93316 -17.61734 -17.14398 -16.65795 -16.50764 -16.19144 -15.97368 -15.42576 -15.33013 -15.19811 -14.94310 -14.70382 -14.41393 -14.30736 -14.24633 -13.86613 -13.41951 -13.33583 -13.21893 -13.13926 -12.97592 -12.91808 -12.87839 -12.66405 -12.53228 -12.52329 -12.34586 -12.28460 -12.07900 -11.71504 -11.53305 -11.42104 -11.27240 -11.14918 -10.86064 -10.60497 -10.22083 -9.98000 -9.59266 -8.24223 -6.34097 0.98129 1.41579 1.42243 1.52104 1.57221 1.72602 1.99401 2.40785 2.64945 2.77549 3.10585 3.12832 3.60142 3.67580 3.72536 3.76423 3.78812 3.92442 3.97334 4.32265 4.40689 4.48110 4.50396 4.53156 4.56901 4.59172 4.67172 4.73901 4.76664 4.77744 4.81666 4.83989 4.85947 4.87616 4.91905 5.09541 5.23423 5.25192 5.29181 5.32326 5.42327 5.49084 5.51127 5.59273 5.78374 6.00957 6.17109 6.35214 6.78597 7.09414 7.20590 7.34948 7.54862 8.87524 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.016631 B = 0.001904 C = 0.001774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1683.224227 B =14702.632582 C =15779.530609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.125 3.875 3 C -0.134 4.134 4 C -0.182 4.182 5 O -0.365 6.365 6 C 0.665 3.335 7 O -0.597 6.597 8 N -0.623 5.623 9 C 0.134 3.866 10 C -0.156 4.156 11 H 0.164 0.836 12 C -0.173 4.173 13 H 0.159 0.841 14 C 0.155 3.845 15 C 0.106 3.894 16 H 0.088 0.912 17 N -0.697 5.697 18 C 0.700 3.300 19 O -0.642 6.642 20 N -0.729 5.729 21 C 0.160 3.840 22 C 0.025 3.975 23 C -0.547 4.547 24 H 0.057 0.943 25 C 0.008 3.992 26 N -0.924 5.924 27 Si 0.964 3.036 28 H -0.272 1.272 29 H -0.279 1.279 30 H -0.268 1.268 31 H 0.068 0.932 32 H 0.090 0.910 33 H 0.060 0.940 34 H 0.063 0.937 35 H 0.102 0.898 36 H 0.076 0.924 37 H 0.057 0.943 38 H 0.093 0.907 39 H 0.051 0.949 40 H 0.120 0.880 41 H 0.091 0.909 42 H 0.067 0.933 43 H 0.119 0.881 44 H 0.417 0.583 45 H 0.409 0.591 46 H 0.042 0.958 47 H 0.041 0.959 48 H 0.011 0.989 49 H 0.011 0.989 50 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.272 18.729 8.905 31.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.089 3.911 3 C -0.191 4.191 4 C -0.239 4.239 5 O -0.280 6.280 6 C 0.421 3.579 7 O -0.489 6.489 8 N -0.365 5.365 9 C 0.013 3.987 10 C -0.176 4.176 11 H 0.182 0.818 12 C -0.193 4.193 13 H 0.176 0.824 14 C 0.034 3.966 15 C -0.001 4.001 16 H 0.107 0.893 17 N -0.351 5.351 18 C 0.400 3.600 19 O -0.524 6.524 20 N -0.383 5.383 21 C 0.036 3.964 22 C -0.013 4.013 23 C -0.586 4.586 24 H 0.075 0.925 25 C -0.191 4.191 26 N -0.564 5.564 27 Si 0.789 3.211 28 H -0.197 1.197 29 H -0.204 1.204 30 H -0.193 1.193 31 H 0.087 0.913 32 H 0.109 0.891 33 H 0.078 0.922 34 H 0.082 0.918 35 H 0.121 0.879 36 H 0.095 0.905 37 H 0.076 0.924 38 H 0.111 0.889 39 H 0.070 0.930 40 H 0.137 0.863 41 H 0.110 0.890 42 H 0.086 0.914 43 H 0.136 0.864 44 H 0.255 0.745 45 H 0.245 0.755 46 H 0.061 0.939 47 H 0.060 0.940 48 H 0.029 0.971 49 H 0.030 0.970 50 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -24.604 18.936 7.589 31.961 hybrid contribution 1.033 -0.937 -0.216 1.411 sum -23.571 17.999 7.373 30.560 Atomic orbital electron populations 1.22438 0.93381 1.03617 1.03832 1.22420 0.94963 0.92637 0.81117 1.21875 1.02174 0.90483 1.04600 1.22490 1.01158 1.02174 0.98118 1.86297 1.71601 1.22854 1.47205 1.17648 0.78584 0.80871 0.80813 1.90895 1.43138 1.71163 1.43697 1.48260 1.52793 1.13776 1.21696 1.22600 0.90982 0.95984 0.89130 1.24172 1.01070 0.92584 0.99752 0.81813 1.24246 0.90257 1.00366 1.04457 0.82353 1.21893 0.96241 0.77585 1.00895 1.21086 0.84237 0.97022 0.97758 0.89348 1.44031 1.24853 1.56011 1.10206 1.16108 0.80283 0.79058 0.84511 1.90882 1.76470 1.61029 1.24022 1.45160 1.24994 1.55109 1.13063 1.21087 0.89829 0.97705 0.87821 1.19125 0.91780 0.94113 0.96261 1.21455 1.08979 1.32861 0.95263 0.92480 1.25849 0.99287 0.95522 0.98466 1.70048 1.28012 1.36565 1.21771 0.85455 0.78685 0.77747 0.79223 1.19738 1.20424 1.19267 0.91348 0.89107 0.92151 0.91781 0.87940 0.90525 0.92413 0.88873 0.92980 0.86260 0.89030 0.91429 0.86357 0.74493 0.75468 0.93929 0.94040 0.97092 0.97047 0.92524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.99 8.37 71.98 0.60 -2.38 16 2 C 0.12 2.36 1.13 -10.79 -0.01 2.34 16 3 C -0.13 -1.64 8.85 71.98 0.64 -1.00 16 4 C -0.18 -3.92 8.37 71.98 0.60 -3.32 16 5 O -0.37 -8.35 9.47 -55.45 -0.52 -8.87 16 6 C 0.67 17.07 8.01 129.79 1.04 18.11 16 7 O -0.60 -18.61 12.15 19.82 0.24 -18.37 16 8 N -0.62 -12.15 2.95 -931.89 -2.75 -14.90 16 9 C 0.13 1.63 7.10 86.06 0.61 2.24 16 10 C -0.16 -1.82 7.03 -9.89 -0.07 -1.89 16 11 H 0.16 0.93 8.14 -2.39 -0.02 0.91 16 12 C -0.17 -2.38 7.10 -9.90 -0.07 -2.45 16 13 H 0.16 1.45 8.14 -2.39 -0.02 1.43 16 14 C 0.15 2.45 7.00 86.52 0.61 3.05 16 15 C 0.11 2.34 5.77 45.00 0.26 2.60 16 16 H 0.09 2.83 7.26 -2.39 -0.02 2.81 16 17 N -0.70 -16.31 5.57 -457.82 -2.55 -18.86 16 18 C 0.70 24.69 8.57 179.06 1.53 26.22 16 19 O -0.64 -29.34 15.91 -4.00 -0.06 -29.41 16 20 N -0.73 -25.50 5.56 -478.54 -2.66 -28.16 16 21 C 0.16 7.05 5.61 86.38 0.48 7.54 16 22 C 0.02 1.25 5.09 29.85 0.15 1.40 16 23 C -0.55 -30.77 9.11 25.60 0.23 -30.53 16 24 H 0.06 3.16 7.74 -2.91 -0.02 3.14 16 25 C 0.01 0.43 5.46 84.66 0.46 0.89 16 26 N -0.92 -53.90 13.29 21.45 0.28 -53.61 16 27 Si 0.96 43.83 29.54 68.60 2.03 45.85 16 28 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 29 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 30 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 31 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.06 1.39 5.88 -2.39 -0.01 1.37 16 34 H 0.06 0.85 8.14 -2.38 -0.02 0.83 16 35 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 36 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.06 1.61 5.88 -2.39 -0.01 1.60 16 38 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 39 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 40 H 0.12 0.74 8.14 -2.39 -0.02 0.72 16 41 H 0.09 1.21 7.99 -2.39 -0.02 1.19 16 42 H 0.07 1.42 7.88 -2.39 -0.02 1.40 16 43 H 0.12 1.14 8.14 -2.39 -0.02 1.13 16 44 H 0.42 6.35 8.84 -92.71 -0.82 5.53 16 45 H 0.41 11.68 8.49 -92.71 -0.79 10.89 16 46 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 47 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 48 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 49 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 50 H 0.27 14.56 8.31 -92.71 -0.77 13.78 16 Total: -1.00 -79.94 408.72 0.43 -79.52 By element: Atomic # 1 Polarization: 24.64 SS G_CDS: -0.65 Total: 23.99 kcal Atomic # 6 Polarization: 15.75 SS G_CDS: 7.07 Total: 22.82 kcal Atomic # 7 Polarization: -107.85 SS G_CDS: -7.67 Total: -115.52 kcal Atomic # 8 Polarization: -56.31 SS G_CDS: -0.35 Total: -56.66 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.85 kcal Total: -79.94 0.43 -79.52 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000366255648.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.381 kcal (2) G-P(sol) polarization free energy of solvation -79.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds