Wall clock time and date at job start Wed Apr 1 2020 00:19:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47372 * 2 1 4 4 N 1.46500 * 109.47286 * 120.00520 * 2 1 3 5 5 C 1.46766 * 124.34988 * 119.99902 * 4 2 1 6 6 C 1.54480 * 105.47089 * 196.74972 * 5 4 2 7 7 C 1.54618 * 101.76574 * 334.58387 * 6 5 4 8 8 H 1.08999 * 110.48908 * 143.60899 * 7 6 5 9 9 N 1.46500 * 110.48846 * 266.11748 * 7 6 5 10 10 C 1.34775 * 120.00504 * 205.00339 * 9 7 6 11 11 O 1.21349 * 119.99827 * 359.97438 * 10 9 7 12 12 C 1.49452 * 120.00284 * 180.02562 * 10 9 7 13 13 O 1.21353 * 119.99562 * 359.97438 * 12 10 9 14 14 N 1.34780 * 120.00099 * 179.97438 * 12 10 9 15 15 C 1.46498 * 119.99779 * 179.97438 * 14 12 10 16 16 C 1.52998 * 109.46738 * 180.02562 * 15 14 12 17 17 C 1.53001 * 109.47369 * 299.99875 * 16 15 14 18 18 C 1.53001 * 109.47406 * 60.00356 * 16 15 14 19 19 C 1.50705 * 109.46864 * 180.02562 * 16 15 14 20 20 H 1.07998 * 119.99948 * 0.02562 * 19 16 15 21 21 C 1.37879 * 119.99678 * 180.02562 * 19 16 15 22 22 N 1.31512 * 120.00095 * 0.02562 * 21 19 16 23 23 Si 1.86802 * 119.99584 * 179.97438 * 21 19 16 24 24 H 1.48497 * 109.47202 * 60.00197 * 23 21 19 25 25 H 1.48502 * 109.46792 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.47149 * 300.00105 * 23 21 19 27 27 C 1.34413 * 124.34722 * 299.69694 * 4 2 1 28 28 O 1.21284 * 124.94565 * 359.83615 * 27 4 2 29 29 H 1.09004 * 109.47116 * 299.99823 * 1 2 3 30 30 H 1.08999 * 109.47795 * 59.99237 * 1 2 3 31 31 H 1.09001 * 109.47654 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.46909 * 240.00564 * 2 1 3 33 33 H 1.08993 * 109.47517 * 300.00395 * 3 2 1 34 34 H 1.09004 * 109.46855 * 60.00017 * 3 2 1 35 35 H 1.09003 * 109.47317 * 179.97438 * 3 2 1 36 36 H 1.09008 * 110.24439 * 315.74963 * 5 4 2 37 37 H 1.08998 * 110.24767 * 77.66036 * 5 4 2 38 38 H 1.09003 * 110.96745 * 92.70719 * 6 5 4 39 39 H 1.09003 * 110.96503 * 216.45930 * 6 5 4 40 40 H 0.96999 * 119.99692 * 25.00251 * 9 7 6 41 41 H 0.96999 * 119.99989 * 0.02562 * 14 12 10 42 42 H 1.09003 * 109.47254 * 300.00116 * 15 14 12 43 43 H 1.09004 * 109.46924 * 60.00322 * 15 14 12 44 44 H 1.09004 * 109.46460 * 60.00460 * 17 16 15 45 45 H 1.08998 * 109.47177 * 179.97438 * 17 16 15 46 46 H 1.08998 * 109.47315 * 300.00070 * 17 16 15 47 47 H 1.09001 * 109.46909 * 59.99239 * 18 16 15 48 48 H 1.08998 * 109.47504 * 179.97438 * 18 16 15 49 49 H 1.08998 * 109.46633 * 300.00272 * 18 16 15 50 50 H 0.97001 * 119.99543 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.8656 -1.8889 1.1725 6 6 2.7663 -2.4917 2.5914 7 6 2.4125 -1.2476 3.4385 8 1 1.7208 -1.5142 4.2376 9 7 3.6261 -0.6429 3.9932 10 6 3.5572 0.0961 5.1182 11 8 2.4899 0.2610 5.6714 12 6 4.7952 0.7135 5.6837 13 8 5.8626 0.5489 5.1302 14 7 4.7263 1.4529 6.8085 15 6 5.9399 2.0576 7.3631 16 6 5.5873 2.8376 8.6312 17 6 4.5798 3.9373 8.2899 18 6 4.9749 1.8865 9.6613 19 6 6.8357 3.4601 9.2014 20 1 7.7855 3.3144 8.7083 21 6 6.7653 4.2158 10.3525 22 7 5.6088 4.3929 10.9531 23 14 8.3128 4.9868 11.0597 24 1 8.9070 5.9104 10.0601 25 1 7.9706 5.7441 12.2904 26 1 9.2910 3.9196 11.3904 27 6 1.7528 -0.3051 2.4561 28 8 1.0823 0.6584 2.7610 29 1 -0.3633 0.5138 0.8900 30 1 -0.3635 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8932 -0.5137 -0.8900 33 1 1.6767 1.9564 -0.8899 34 1 1.6767 1.9563 0.8900 35 1 3.1300 1.4425 0.0005 36 1 2.4938 -2.5993 0.4340 37 1 3.8970 -1.6172 0.9480 38 1 1.9732 -3.2377 2.6436 39 1 3.7207 -2.9168 2.9022 40 1 4.4792 -0.7744 3.5508 41 1 3.8732 1.5841 7.2511 42 1 6.6576 1.2741 7.6066 43 1 6.3765 2.7349 6.6290 44 1 3.6768 3.4873 7.8773 45 1 4.3283 4.4927 9.1934 46 1 5.0161 4.6149 7.5561 47 1 5.6927 1.1031 9.9043 48 1 4.7241 2.4421 10.5649 49 1 4.0719 1.4366 9.2486 50 1 5.5594 4.9242 11.7631 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000422324589.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:19:07 Heat of formation + Delta-G solvation = -105.030021 kcal Electronic energy + Delta-G solvation = -30352.488692 eV Core-core repulsion = 26186.857557 eV Total energy + Delta-G solvation = -4165.631135 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.29301 -40.08319 -38.29005 -36.76836 -36.47920 -35.93845 -33.76521 -33.10546 -30.88200 -29.91036 -27.82221 -27.50582 -26.17564 -25.70211 -25.24825 -23.59454 -22.84300 -22.04072 -20.36274 -19.25395 -19.01864 -18.33984 -17.36975 -16.90885 -16.23450 -15.89618 -15.71330 -15.54488 -15.07694 -14.87546 -14.70495 -14.53333 -14.14028 -13.97019 -13.73147 -13.56789 -13.33478 -13.29598 -12.92217 -12.69109 -12.39626 -12.25729 -12.20660 -12.07441 -11.86833 -11.59821 -11.50241 -11.44002 -11.38154 -11.16193 -10.85206 -10.73154 -10.44706 -10.38074 -10.19020 -9.63518 -9.55481 -9.24096 -9.18919 -9.05369 -8.79701 -8.60396 -8.35769 -6.01140 -4.12149 1.60609 2.00584 2.55252 2.81129 3.30559 3.35309 3.38167 3.43484 3.86199 3.93119 3.96186 4.31045 4.39963 4.47709 4.58310 4.72934 4.77798 4.82613 4.97455 5.17762 5.25278 5.27112 5.30559 5.33282 5.38711 5.45403 5.54640 5.86492 5.95565 5.99723 6.11854 6.24067 6.30286 6.48167 6.62575 6.77773 6.82398 6.87446 6.95251 7.00865 7.02339 7.34784 7.56946 7.64416 7.70743 7.91974 7.94613 8.01820 8.13629 8.31947 8.41306 8.87759 9.53590 11.00227 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.023391 B = 0.002201 C = 0.002163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.732116 B =12717.938720 C =12939.481101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.154 3.846 3 C -0.170 4.170 4 N -0.617 5.617 5 C 0.099 3.901 6 C -0.141 4.141 7 C 0.112 3.888 8 H 0.126 0.874 9 N -0.693 5.693 10 C 0.509 3.491 11 O -0.501 6.501 12 C 0.499 3.501 13 O -0.536 6.536 14 N -0.678 5.678 15 C 0.128 3.872 16 C 0.056 3.944 17 C -0.134 4.134 18 C -0.134 4.134 19 C -0.508 4.508 20 H 0.058 0.942 21 C 0.067 3.933 22 N -0.884 5.884 23 Si 0.895 3.105 24 H -0.277 1.277 25 H -0.288 1.288 26 H -0.277 1.277 27 C 0.507 3.493 28 O -0.502 6.502 29 H 0.072 0.928 30 H 0.067 0.933 31 H 0.056 0.944 32 H 0.088 0.912 33 H 0.067 0.933 34 H 0.072 0.928 35 H 0.057 0.943 36 H 0.083 0.917 37 H 0.074 0.926 38 H 0.100 0.900 39 H 0.103 0.897 40 H 0.415 0.585 41 H 0.411 0.589 42 H 0.062 0.938 43 H 0.062 0.938 44 H 0.009 0.991 45 H 0.087 0.913 46 H 0.027 0.973 47 H 0.027 0.973 48 H 0.087 0.913 49 H 0.009 0.991 50 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.714 -15.068 -21.889 27.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.052 3.948 3 C -0.228 4.228 4 N -0.354 5.354 5 C -0.024 4.024 6 C -0.179 4.179 7 C 0.004 3.996 8 H 0.144 0.856 9 N -0.350 5.350 10 C 0.290 3.710 11 O -0.374 6.374 12 C 0.278 3.722 13 O -0.414 6.414 14 N -0.330 5.330 15 C 0.006 3.994 16 C 0.055 3.945 17 C -0.192 4.192 18 C -0.192 4.192 19 C -0.546 4.546 20 H 0.076 0.924 21 C -0.135 4.135 22 N -0.522 5.522 23 Si 0.723 3.277 24 H -0.203 1.203 25 H -0.213 1.213 26 H -0.203 1.203 27 C 0.292 3.708 28 O -0.374 6.374 29 H 0.091 0.909 30 H 0.086 0.914 31 H 0.075 0.925 32 H 0.106 0.894 33 H 0.086 0.914 34 H 0.091 0.909 35 H 0.076 0.924 36 H 0.101 0.899 37 H 0.093 0.907 38 H 0.119 0.881 39 H 0.121 0.879 40 H 0.252 0.748 41 H 0.249 0.751 42 H 0.081 0.919 43 H 0.080 0.920 44 H 0.028 0.972 45 H 0.106 0.894 46 H 0.047 0.953 47 H 0.047 0.953 48 H 0.106 0.894 49 H 0.028 0.972 50 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -8.211 -14.360 -21.562 27.176 hybrid contribution 0.873 0.374 0.249 0.982 sum -7.338 -13.986 -21.313 26.527 Atomic orbital electron populations 1.22186 0.94609 1.02319 1.03492 1.20951 0.94517 0.93234 0.86127 1.22199 1.01416 0.95705 1.03491 1.48478 1.51397 1.29373 1.06135 1.22155 0.95426 0.86758 0.98041 1.22952 1.05042 0.96363 0.93512 1.21682 0.88915 0.92363 0.96679 0.85640 1.45444 1.10486 1.52442 1.26653 1.20590 0.90014 0.79226 0.81126 1.90797 1.29939 1.57455 1.59171 1.19841 0.88333 0.81239 0.82798 1.90719 1.29629 1.60894 1.60186 1.46228 1.14363 1.48109 1.24263 1.21961 0.84092 0.96358 0.96957 1.18380 0.95589 0.91743 0.88745 1.21863 0.96006 0.99542 1.01788 1.21859 0.96476 0.98199 1.02617 1.20904 0.92998 1.31392 1.09351 0.92409 1.24886 0.96066 0.95977 0.96567 1.69800 1.23575 1.39702 1.19152 0.86612 0.83361 0.79372 0.78370 1.20292 1.21326 1.20279 1.21147 0.80419 0.85575 0.83680 1.90747 1.38124 1.27413 1.81105 0.90906 0.91408 0.92497 0.89427 0.91388 0.90872 0.92391 0.89861 0.90735 0.88130 0.87884 0.74774 0.75101 0.91923 0.91977 0.97226 0.89422 0.95337 0.95336 0.89412 0.97241 0.92871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.29 9.20 37.15 0.34 -0.95 16 2 C 0.15 1.15 3.47 -67.93 -0.24 0.91 16 3 C -0.17 -1.50 9.19 37.16 0.34 -1.16 16 4 N -0.62 -5.13 2.83 -164.84 -0.47 -5.60 16 5 C 0.10 0.46 7.30 -3.12 -0.02 0.44 16 6 C -0.14 -0.66 6.78 -25.10 -0.17 -0.83 16 7 C 0.11 1.10 3.28 -67.95 -0.22 0.88 16 8 H 0.13 1.36 7.55 -51.93 -0.39 0.97 16 9 N -0.69 -8.09 5.09 -54.25 -0.28 -8.36 16 10 C 0.51 8.06 7.89 -11.58 -0.09 7.97 16 11 O -0.50 -9.18 16.13 5.50 0.09 -9.09 16 12 C 0.50 8.87 7.89 -11.58 -0.09 8.78 16 13 O -0.54 -10.15 16.48 5.49 0.09 -10.06 16 14 N -0.68 -12.88 4.95 -60.73 -0.30 -13.18 16 15 C 0.13 2.71 4.50 -4.04 -0.02 2.69 16 16 C 0.06 1.32 0.50 -155.66 -0.08 1.24 16 17 C -0.13 -3.15 8.08 37.16 0.30 -2.85 16 18 C -0.13 -3.09 8.08 37.16 0.30 -2.79 16 19 C -0.51 -13.26 8.01 -34.44 -0.28 -13.53 16 20 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 21 C 0.07 1.76 5.15 -17.82 -0.09 1.67 16 22 N -0.88 -23.79 9.35 55.43 0.52 -23.28 16 23 Si 0.89 20.71 29.54 -169.99 -5.02 15.69 16 24 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 25 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 26 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 27 C 0.51 6.10 7.05 -10.86 -0.08 6.02 16 28 O -0.50 -8.31 15.12 5.55 0.08 -8.23 16 29 H 0.07 0.78 6.81 -51.93 -0.35 0.43 16 30 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.09 0.43 8.07 -51.93 -0.42 0.02 16 33 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.07 0.89 6.76 -51.93 -0.35 0.54 16 35 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.08 0.21 8.14 -51.92 -0.42 -0.21 16 37 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 38 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16 39 H 0.10 0.35 8.07 -51.93 -0.42 -0.07 16 40 H 0.42 4.10 8.10 -40.82 -0.33 3.77 16 41 H 0.41 7.79 5.63 -40.82 -0.23 7.56 16 42 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 43 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16 44 H 0.01 0.19 6.86 -51.93 -0.36 -0.17 16 45 H 0.09 2.25 6.07 -51.93 -0.32 1.94 16 46 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 47 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 48 H 0.09 2.23 6.07 -51.93 -0.32 1.92 16 49 H 0.01 0.18 6.86 -51.93 -0.36 -0.17 16 50 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 LS Contribution 399.66 15.07 6.02 6.02 Total: -1.00 -32.23 399.66 -7.38 -39.62 By element: Atomic # 1 Polarization: 16.00 SS G_CDS: -8.03 Total: 7.97 kcal Atomic # 6 Polarization: 8.58 SS G_CDS: -0.09 Total: 8.49 kcal Atomic # 7 Polarization: -49.89 SS G_CDS: -0.53 Total: -50.42 kcal Atomic # 8 Polarization: -27.64 SS G_CDS: 0.26 Total: -27.38 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -32.23 -7.38 -39.62 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000422324589.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.414 kcal (2) G-P(sol) polarization free energy of solvation -32.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds