Wall clock time and date at job start Wed Apr 1 2020 00:19:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47372 * 2 1 4 4 N 1.46500 * 109.47286 * 120.00520 * 2 1 3 5 5 C 1.46766 * 124.34988 * 119.99902 * 4 2 1 6 6 C 1.54480 * 105.47089 * 196.74972 * 5 4 2 7 7 C 1.54618 * 101.76574 * 334.58387 * 6 5 4 8 8 H 1.08999 * 110.48908 * 143.60899 * 7 6 5 9 9 N 1.46500 * 110.48846 * 266.11748 * 7 6 5 10 10 C 1.34775 * 120.00504 * 205.00339 * 9 7 6 11 11 O 1.21349 * 119.99827 * 359.97438 * 10 9 7 12 12 C 1.49452 * 120.00284 * 180.02562 * 10 9 7 13 13 O 1.21353 * 119.99562 * 359.97438 * 12 10 9 14 14 N 1.34780 * 120.00099 * 179.97438 * 12 10 9 15 15 C 1.46498 * 119.99779 * 179.97438 * 14 12 10 16 16 C 1.52998 * 109.46738 * 180.02562 * 15 14 12 17 17 C 1.53001 * 109.47369 * 299.99875 * 16 15 14 18 18 C 1.53001 * 109.47406 * 60.00356 * 16 15 14 19 19 C 1.50705 * 109.46864 * 180.02562 * 16 15 14 20 20 H 1.07998 * 119.99948 * 0.02562 * 19 16 15 21 21 C 1.37879 * 119.99678 * 180.02562 * 19 16 15 22 22 N 1.31512 * 120.00095 * 0.02562 * 21 19 16 23 23 Si 1.86802 * 119.99584 * 179.97438 * 21 19 16 24 24 H 1.48497 * 109.47202 * 60.00197 * 23 21 19 25 25 H 1.48502 * 109.46792 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.47149 * 300.00105 * 23 21 19 27 27 C 1.34413 * 124.34722 * 299.69694 * 4 2 1 28 28 O 1.21284 * 124.94565 * 359.83615 * 27 4 2 29 29 H 1.09004 * 109.47116 * 299.99823 * 1 2 3 30 30 H 1.08999 * 109.47795 * 59.99237 * 1 2 3 31 31 H 1.09001 * 109.47654 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.46909 * 240.00564 * 2 1 3 33 33 H 1.08993 * 109.47517 * 300.00395 * 3 2 1 34 34 H 1.09004 * 109.46855 * 60.00017 * 3 2 1 35 35 H 1.09003 * 109.47317 * 179.97438 * 3 2 1 36 36 H 1.09008 * 110.24439 * 315.74963 * 5 4 2 37 37 H 1.08998 * 110.24767 * 77.66036 * 5 4 2 38 38 H 1.09003 * 110.96745 * 92.70719 * 6 5 4 39 39 H 1.09003 * 110.96503 * 216.45930 * 6 5 4 40 40 H 0.96999 * 119.99692 * 25.00251 * 9 7 6 41 41 H 0.96999 * 119.99989 * 0.02562 * 14 12 10 42 42 H 1.09003 * 109.47254 * 300.00116 * 15 14 12 43 43 H 1.09004 * 109.46924 * 60.00322 * 15 14 12 44 44 H 1.09004 * 109.46460 * 60.00460 * 17 16 15 45 45 H 1.08998 * 109.47177 * 179.97438 * 17 16 15 46 46 H 1.08998 * 109.47315 * 300.00070 * 17 16 15 47 47 H 1.09001 * 109.46909 * 59.99239 * 18 16 15 48 48 H 1.08998 * 109.47504 * 179.97438 * 18 16 15 49 49 H 1.08998 * 109.46633 * 300.00272 * 18 16 15 50 50 H 0.97001 * 119.99543 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.8656 -1.8889 1.1725 6 6 2.7663 -2.4917 2.5914 7 6 2.4125 -1.2476 3.4385 8 1 1.7208 -1.5142 4.2376 9 7 3.6261 -0.6429 3.9932 10 6 3.5572 0.0961 5.1182 11 8 2.4899 0.2610 5.6714 12 6 4.7952 0.7135 5.6837 13 8 5.8626 0.5489 5.1302 14 7 4.7263 1.4529 6.8085 15 6 5.9399 2.0576 7.3631 16 6 5.5873 2.8376 8.6312 17 6 4.5798 3.9373 8.2899 18 6 4.9749 1.8865 9.6613 19 6 6.8357 3.4601 9.2014 20 1 7.7855 3.3144 8.7083 21 6 6.7653 4.2158 10.3525 22 7 5.6088 4.3929 10.9531 23 14 8.3128 4.9868 11.0597 24 1 8.9070 5.9104 10.0601 25 1 7.9706 5.7441 12.2904 26 1 9.2910 3.9196 11.3904 27 6 1.7528 -0.3051 2.4561 28 8 1.0823 0.6584 2.7610 29 1 -0.3633 0.5138 0.8900 30 1 -0.3635 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8932 -0.5137 -0.8900 33 1 1.6767 1.9564 -0.8899 34 1 1.6767 1.9563 0.8900 35 1 3.1300 1.4425 0.0005 36 1 2.4938 -2.5993 0.4340 37 1 3.8970 -1.6172 0.9480 38 1 1.9732 -3.2377 2.6436 39 1 3.7207 -2.9168 2.9022 40 1 4.4792 -0.7744 3.5508 41 1 3.8732 1.5841 7.2511 42 1 6.6576 1.2741 7.6066 43 1 6.3765 2.7349 6.6290 44 1 3.6768 3.4873 7.8773 45 1 4.3283 4.4927 9.1934 46 1 5.0161 4.6149 7.5561 47 1 5.6927 1.1031 9.9043 48 1 4.7241 2.4421 10.5649 49 1 4.0719 1.4366 9.2486 50 1 5.5594 4.9242 11.7631 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000422324589.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:19:06 Heat of formation + Delta-G solvation = -128.140448 kcal Electronic energy + Delta-G solvation = -30353.490835 eV Core-core repulsion = 26186.857557 eV Total energy + Delta-G solvation = -4166.633278 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.21892 -41.30046 -39.66214 -38.22024 -37.64412 -36.79547 -35.17734 -34.28888 -32.76259 -30.59929 -28.65793 -28.16414 -27.71147 -27.61027 -27.15484 -24.94280 -23.43965 -22.79213 -21.69573 -20.74089 -20.08744 -19.72459 -18.34965 -17.97152 -17.65260 -17.19764 -17.05673 -16.67100 -16.41628 -16.19312 -15.78678 -15.73406 -15.08936 -15.00495 -14.79668 -14.75326 -14.57763 -14.30853 -14.14846 -14.06217 -13.90010 -13.22745 -13.14398 -13.04863 -12.90243 -12.83349 -12.69214 -12.62608 -12.57084 -12.43902 -12.29053 -12.16566 -12.12989 -12.12168 -11.52457 -11.40771 -11.31881 -10.80899 -10.68219 -10.41587 -10.19012 -10.11668 -9.72816 -8.01590 -6.18579 0.26662 0.97106 1.46283 1.46982 1.53708 1.67876 1.92035 2.11761 2.45553 2.70942 3.22165 3.27022 3.34044 3.42336 3.80841 3.95678 4.06268 4.13947 4.27712 4.32244 4.45551 4.48654 4.64660 4.65633 4.67170 4.80336 4.82978 4.84996 4.88629 4.90182 4.99157 5.01727 5.03423 5.14780 5.15118 5.18456 5.20392 5.26933 5.45657 5.62609 5.66378 5.66885 5.83339 6.08665 6.09283 6.17136 6.32560 6.39830 6.66411 6.84523 6.90766 7.10465 7.49423 8.97657 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.023391 B = 0.002201 C = 0.002163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.732116 B =12717.938720 C =12939.481101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.148 3.852 3 C -0.168 4.168 4 N -0.609 5.609 5 C 0.093 3.907 6 C -0.124 4.124 7 C 0.105 3.895 8 H 0.112 0.888 9 N -0.672 5.672 10 C 0.512 3.488 11 O -0.531 6.531 12 C 0.501 3.499 13 O -0.546 6.546 14 N -0.682 5.682 15 C 0.143 3.857 16 C 0.050 3.950 17 C -0.125 4.125 18 C -0.124 4.124 19 C -0.526 4.526 20 H 0.053 0.947 21 C 0.025 3.975 22 N -0.902 5.902 23 Si 0.950 3.050 24 H -0.276 1.276 25 H -0.286 1.286 26 H -0.273 1.273 27 C 0.494 3.506 28 O -0.562 6.562 29 H 0.033 0.967 30 H 0.084 0.916 31 H 0.068 0.932 32 H 0.129 0.871 33 H 0.086 0.914 34 H 0.030 0.970 35 H 0.057 0.943 36 H 0.118 0.882 37 H 0.089 0.911 38 H 0.123 0.877 39 H 0.125 0.875 40 H 0.426 0.574 41 H 0.412 0.588 42 H 0.060 0.940 43 H 0.054 0.946 44 H 0.025 0.975 45 H 0.064 0.936 46 H 0.022 0.978 47 H 0.026 0.974 48 H 0.063 0.937 49 H 0.028 0.972 50 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.897 -17.515 -24.418 30.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.047 3.953 3 C -0.226 4.226 4 N -0.343 5.343 5 C -0.029 4.029 6 C -0.162 4.162 7 C -0.004 4.004 8 H 0.130 0.870 9 N -0.328 5.328 10 C 0.293 3.707 11 O -0.407 6.407 12 C 0.281 3.719 13 O -0.424 6.424 14 N -0.333 5.333 15 C 0.021 3.979 16 C 0.050 3.950 17 C -0.183 4.183 18 C -0.182 4.182 19 C -0.565 4.565 20 H 0.072 0.928 21 C -0.175 4.175 22 N -0.541 5.541 23 Si 0.777 3.223 24 H -0.201 1.201 25 H -0.212 1.212 26 H -0.199 1.199 27 C 0.279 3.721 28 O -0.439 6.439 29 H 0.052 0.948 30 H 0.103 0.897 31 H 0.087 0.913 32 H 0.146 0.854 33 H 0.105 0.895 34 H 0.049 0.951 35 H 0.076 0.924 36 H 0.136 0.864 37 H 0.108 0.892 38 H 0.142 0.858 39 H 0.144 0.856 40 H 0.265 0.735 41 H 0.250 0.750 42 H 0.078 0.922 43 H 0.072 0.928 44 H 0.044 0.956 45 H 0.083 0.917 46 H 0.042 0.958 47 H 0.045 0.955 48 H 0.082 0.918 49 H 0.047 0.953 50 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -7.358 -16.872 -24.167 30.379 hybrid contribution 0.601 1.101 0.920 1.556 sum -6.756 -15.771 -23.247 28.893 Atomic orbital electron populations 1.22140 0.94943 1.02702 1.02372 1.21168 0.94355 0.92711 0.87070 1.22173 1.01272 0.96807 1.02326 1.48644 1.50537 1.29961 1.05147 1.22540 0.95747 0.85783 0.98797 1.23052 1.06981 0.94126 0.92004 1.21929 0.87734 0.94052 0.96639 0.87041 1.45371 1.11877 1.50586 1.24985 1.20205 0.88591 0.79699 0.82221 1.90794 1.30497 1.58923 1.60467 1.20166 0.88997 0.80587 0.82121 1.90705 1.30293 1.61146 1.60303 1.46098 1.13585 1.48688 1.24951 1.21581 0.84751 0.95885 0.95728 1.18380 0.94801 0.92010 0.89829 1.21725 0.96733 0.99328 1.00506 1.21707 0.97224 0.97727 1.01523 1.21206 0.93771 1.31792 1.09682 0.92836 1.25532 0.98469 0.96506 0.96982 1.69928 1.24907 1.39999 1.19241 0.85737 0.80424 0.78568 0.77599 1.20131 1.21192 1.19880 1.21559 0.80077 0.85140 0.85350 1.90717 1.40900 1.30014 1.82264 0.94811 0.89739 0.91300 0.85358 0.89544 0.95051 0.92420 0.86360 0.89233 0.85847 0.85647 0.73490 0.75046 0.92191 0.92763 0.95557 0.91717 0.95849 0.95455 0.91796 0.95327 0.93050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.32 9.20 71.98 0.66 -1.66 16 2 C 0.15 1.88 3.47 44.99 0.16 2.04 16 3 C -0.17 -2.86 9.19 71.98 0.66 -2.20 16 4 N -0.61 -8.78 2.83 -794.04 -2.25 -11.02 16 5 C 0.09 0.44 7.30 86.83 0.63 1.08 16 6 C -0.12 -0.68 6.78 31.65 0.21 -0.47 16 7 C 0.10 1.92 3.28 44.98 0.15 2.07 16 8 H 0.11 2.40 7.55 -2.39 -0.02 2.38 16 9 N -0.67 -14.88 5.09 -443.91 -2.26 -17.14 16 10 C 0.51 16.15 7.89 87.27 0.69 16.83 16 11 O -0.53 -19.85 16.13 -3.24 -0.05 -19.90 16 12 C 0.50 17.64 7.89 87.27 0.69 18.33 16 13 O -0.55 -20.18 16.48 -3.26 -0.05 -20.23 16 14 N -0.68 -25.85 4.95 -464.40 -2.30 -28.15 16 15 C 0.14 6.06 4.50 86.38 0.39 6.45 16 16 C 0.05 2.39 0.50 -52.93 -0.03 2.37 16 17 C -0.13 -5.94 8.08 71.98 0.58 -5.36 16 18 C -0.12 -5.76 8.08 71.98 0.58 -5.18 16 19 C -0.53 -27.65 8.01 25.60 0.21 -27.44 16 20 H 0.05 2.79 7.74 -2.91 -0.02 2.77 16 21 C 0.02 1.31 5.15 84.66 0.44 1.75 16 22 N -0.90 -49.20 9.35 21.45 0.20 -49.00 16 23 Si 0.95 42.59 29.54 68.60 2.03 44.62 16 24 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 25 H -0.29 -12.68 7.11 99.48 0.71 -11.98 16 26 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 27 C 0.49 11.75 7.05 87.90 0.62 12.37 16 28 O -0.56 -19.75 15.12 -3.04 -0.05 -19.79 16 29 H 0.03 0.76 6.81 -2.38 -0.02 0.74 16 30 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.13 0.67 8.07 -2.39 -0.02 0.65 16 33 H 0.09 1.09 8.14 -2.39 -0.02 1.08 16 34 H 0.03 0.80 6.76 -2.38 -0.02 0.79 16 35 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.12 -0.12 8.14 -2.38 -0.02 -0.14 16 37 H 0.09 0.26 8.14 -2.39 -0.02 0.24 16 38 H 0.12 0.22 8.14 -2.39 -0.02 0.20 16 39 H 0.13 0.22 8.07 -2.39 -0.02 0.20 16 40 H 0.43 7.49 8.10 -92.71 -0.75 6.74 16 41 H 0.41 15.63 5.63 -92.71 -0.52 15.11 16 42 H 0.06 2.55 8.14 -2.39 -0.02 2.53 16 43 H 0.05 2.36 8.14 -2.38 -0.02 2.34 16 44 H 0.03 1.11 6.86 -2.39 -0.02 1.10 16 45 H 0.06 3.38 6.07 -2.39 -0.01 3.37 16 46 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 47 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 48 H 0.06 3.29 6.07 -2.39 -0.01 3.28 16 49 H 0.03 1.17 6.86 -2.39 -0.02 1.16 16 50 H 0.26 13.71 8.31 -92.71 -0.77 12.94 16 Total: -1.00 -73.74 399.66 1.60 -72.14 By element: Atomic # 1 Polarization: 27.80 SS G_CDS: -0.31 Total: 27.49 kcal Atomic # 6 Polarization: 14.34 SS G_CDS: 6.64 Total: 20.98 kcal Atomic # 7 Polarization: -98.71 SS G_CDS: -6.61 Total: -105.31 kcal Atomic # 8 Polarization: -59.77 SS G_CDS: -0.15 Total: -59.92 kcal Atomic # 14 Polarization: 42.59 SS G_CDS: 2.03 Total: 44.62 kcal Total: -73.74 1.60 -72.14 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000422324589.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.000 kcal (2) G-P(sol) polarization free energy of solvation -73.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds