Wall clock time and date at job start Wed Apr 1 2020 00:04:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47172 * 2 1 4 4 H 1.08992 * 109.47370 * 61.31501 * 3 2 1 5 5 N 1.46500 * 109.46516 * 301.31809 * 3 2 1 6 6 C 1.34780 * 120.00122 * 85.00328 * 5 3 2 7 7 O 1.21586 * 119.99985 * 359.97438 * 6 5 3 8 8 N 1.34771 * 119.99897 * 179.97438 * 6 5 3 9 9 C 1.46506 * 119.99890 * 179.97438 * 8 6 5 10 10 C 1.53002 * 109.47133 * 185.11124 * 9 8 6 11 11 C 1.50704 * 115.54740 * 65.41628 * 10 9 8 12 12 H 1.08002 * 119.99761 * 264.71404 * 11 10 9 13 13 C 1.37874 * 120.00089 * 84.71308 * 11 10 9 14 14 N 1.31516 * 120.00066 * 2.01169 * 13 11 10 15 15 Si 1.86803 * 120.00056 * 182.01470 * 13 11 10 16 16 H 1.48500 * 109.46873 * 89.99923 * 15 13 11 17 17 H 1.48497 * 109.46921 * 210.00139 * 15 13 11 18 18 H 1.48497 * 109.46906 * 329.99971 * 15 13 11 19 19 C 1.52997 * 117.50125 * 279.74636 * 10 9 8 20 20 C 1.52994 * 117.50118 * 211.08139 * 10 9 8 21 21 C 1.50696 * 109.47088 * 181.32198 * 3 2 1 22 22 O 1.21282 * 120.00630 * 92.38537 * 21 3 2 23 23 N 1.34784 * 119.99641 * 272.38553 * 21 3 2 24 24 C 1.47152 * 120.98124 * 4.23554 * 23 21 3 25 25 C 1.53706 * 108.16063 * 129.43416 * 24 23 21 26 26 O 1.42958 * 109.14955 * 52.53634 * 25 24 23 27 27 C 1.42970 * 114.16613 * 297.28707 * 26 25 24 28 28 C 1.47151 * 120.97995 * 184.51678 * 23 21 3 29 29 H 1.08997 * 109.47174 * 60.00297 * 1 2 3 30 30 H 1.09002 * 109.46653 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47374 * 300.00126 * 1 2 3 32 32 H 1.08997 * 109.47256 * 239.99163 * 2 1 3 33 33 H 1.09008 * 109.46742 * 119.99835 * 2 1 3 34 34 H 0.96999 * 119.99994 * 264.99527 * 5 3 2 35 35 H 0.97002 * 120.00343 * 0.02562 * 8 6 5 36 36 H 1.08996 * 109.46926 * 305.11749 * 9 8 6 37 37 H 1.09001 * 109.46771 * 65.11697 * 9 8 6 38 38 H 0.97005 * 120.00138 * 185.02151 * 14 13 11 39 39 H 1.08998 * 117.49858 * 359.97438 * 19 10 9 40 40 H 1.09000 * 117.49901 * 145.02136 * 19 10 9 41 41 H 1.08996 * 117.50280 * 214.98171 * 20 10 9 42 42 H 1.09004 * 117.49475 * 359.97438 * 20 10 9 43 43 H 1.08998 * 109.68050 * 249.20964 * 24 23 21 44 44 H 1.08996 * 109.68616 * 9.76207 * 24 23 21 45 45 H 1.09003 * 109.66013 * 292.56980 * 25 24 23 46 46 H 1.09004 * 109.48566 * 172.39652 * 25 24 23 47 47 H 1.08996 * 109.51100 * 302.65346 * 27 26 25 48 48 H 1.08997 * 109.54995 * 182.52741 * 27 26 25 49 49 H 1.09000 * 109.68454 * 350.23672 * 28 23 21 50 50 H 1.08998 * 109.68232 * 110.75026 * 28 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6961 1.9495 0.9015 5 7 1.5259 2.1421 -1.1800 6 6 0.3042 2.7105 -1.1474 7 8 -0.3713 2.6423 -0.1387 8 7 -0.1685 3.3546 -2.2328 9 6 -1.4967 3.9720 -2.1975 10 6 -1.8411 4.5205 -3.5836 11 6 -2.0005 3.4882 -4.6699 12 1 -1.1674 3.2493 -5.3143 13 6 -3.2099 2.8487 -4.8411 14 7 -4.2357 3.1678 -4.0824 15 14 -3.3916 1.5290 -6.1506 16 1 -3.0559 0.2047 -5.5685 17 1 -4.7917 1.5118 -6.6451 18 1 -2.4716 1.8214 -7.2790 19 6 -1.2436 5.8731 -3.9766 20 6 -2.7350 5.7603 -3.6507 21 6 3.5466 1.4426 -0.0328 22 8 4.1302 1.4944 -1.0947 23 7 4.2457 1.3851 1.1182 24 6 3.5628 1.2286 2.4122 25 6 4.2302 0.0692 3.1691 26 8 5.6413 0.2928 3.2194 27 6 6.2762 0.3166 1.9387 28 6 5.7139 1.4831 1.1183 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8901 34 1 2.0647 2.1963 -1.9848 35 1 0.3702 3.4087 -3.0376 36 1 -2.2365 3.2259 -1.9078 37 1 -1.4994 4.7867 -1.4734 38 1 -5.0646 2.6689 -4.1525 39 1 -0.6055 6.3723 -3.2475 40 1 -0.9662 6.0164 -5.0210 41 1 -3.4381 5.8296 -4.4807 42 1 -3.0781 6.1850 -2.7072 43 1 3.6546 2.1487 2.9894 44 1 2.5095 1.0023 2.2465 45 1 4.0286 -0.8697 2.6534 46 1 3.8330 0.0203 4.1829 47 1 6.0820 -0.6214 1.4186 48 1 7.3509 0.4462 2.0667 49 1 6.0859 1.4254 0.0954 50 1 6.0187 2.4286 1.5668 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430843974.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:04:04 Heat of formation + Delta-G solvation = -78.347865 kcal Electronic energy + Delta-G solvation = -30728.788723 eV Core-core repulsion = 26564.314614 eV Total energy + Delta-G solvation = -4164.474109 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.98658 -39.60267 -38.55603 -36.84522 -35.35999 -35.10180 -33.35269 -32.05194 -31.92264 -31.64147 -28.83827 -27.23788 -25.96164 -24.97875 -24.44310 -22.74387 -21.73187 -21.15597 -20.29899 -19.59134 -19.37191 -18.33435 -17.18296 -16.98762 -16.57247 -16.00754 -15.92245 -15.80829 -15.37895 -15.29911 -15.01049 -14.66138 -14.31878 -14.26116 -13.83921 -13.78955 -13.22926 -13.11695 -12.98145 -12.68859 -12.52851 -12.23337 -12.02262 -11.84883 -11.75808 -11.51494 -11.39006 -11.19551 -10.97940 -10.90041 -10.83455 -10.64823 -10.52505 -10.24260 -10.01759 -9.71376 -9.46699 -9.03624 -9.02522 -8.86647 -8.45799 -8.24810 -8.00209 -6.06460 -4.15000 2.18817 2.35508 3.20780 3.27502 3.33647 3.34941 3.36677 3.72756 4.05007 4.23986 4.37172 4.49923 4.58110 4.68079 4.76529 4.77149 4.91099 4.92409 5.03181 5.13184 5.22456 5.23759 5.28279 5.32919 5.39858 5.44974 5.52175 5.78717 5.93878 6.03429 6.04406 6.24543 6.34967 6.47997 6.56509 6.59409 6.60147 6.65458 6.71253 6.84098 6.91220 7.11596 7.30800 7.43359 7.45649 7.60467 7.73994 7.82754 8.35501 8.61888 8.86056 9.15404 9.52041 11.01630 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.018621 B = 0.002546 C = 0.002467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1503.316711 B =10996.252330 C =11344.917207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.127 4.127 3 C 0.152 3.848 4 H 0.108 0.892 5 N -0.739 5.739 6 C 0.703 3.297 7 O -0.598 6.598 8 N -0.718 5.718 9 C 0.184 3.816 10 C 0.025 3.975 11 C -0.496 4.496 12 H 0.059 0.941 13 C 0.073 3.927 14 N -0.875 5.875 15 Si 0.889 3.111 16 H -0.280 1.280 17 H -0.287 1.287 18 H -0.274 1.274 19 C -0.212 4.212 20 C -0.143 4.143 21 C 0.519 3.481 22 O -0.531 6.531 23 N -0.615 5.615 24 C 0.066 3.934 25 C 0.048 3.952 26 O -0.379 6.379 27 C 0.048 3.952 28 C 0.076 3.924 29 H 0.065 0.935 30 H 0.047 0.953 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.067 0.933 34 H 0.403 0.597 35 H 0.396 0.604 36 H 0.071 0.929 37 H 0.033 0.967 38 H 0.261 0.739 39 H 0.065 0.935 40 H 0.077 0.923 41 H 0.085 0.915 42 H 0.064 0.936 43 H 0.083 0.917 44 H 0.102 0.898 45 H 0.059 0.941 46 H 0.110 0.890 47 H 0.057 0.943 48 H 0.107 0.893 49 H 0.103 0.897 50 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.738 -5.854 13.705 23.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.166 4.166 3 C 0.042 3.958 4 H 0.126 0.874 5 N -0.398 5.398 6 C 0.404 3.596 7 O -0.478 6.478 8 N -0.370 5.370 9 C 0.060 3.940 10 C 0.024 3.976 11 C -0.534 4.534 12 H 0.077 0.923 13 C -0.130 4.130 14 N -0.512 5.512 15 Si 0.716 3.284 16 H -0.206 1.206 17 H -0.212 1.212 18 H -0.199 1.199 19 C -0.249 4.249 20 C -0.181 4.181 21 C 0.307 3.693 22 O -0.406 6.406 23 N -0.351 5.351 24 C -0.057 4.057 25 C -0.030 4.030 26 O -0.298 6.298 27 C -0.029 4.029 28 C -0.047 4.047 29 H 0.084 0.916 30 H 0.066 0.934 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.239 0.761 35 H 0.230 0.770 36 H 0.089 0.911 37 H 0.051 0.949 38 H 0.071 0.929 39 H 0.083 0.917 40 H 0.096 0.904 41 H 0.104 0.896 42 H 0.082 0.918 43 H 0.101 0.899 44 H 0.120 0.880 45 H 0.077 0.923 46 H 0.128 0.872 47 H 0.075 0.925 48 H 0.125 0.875 49 H 0.121 0.879 50 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 17.256 -5.823 14.188 23.086 hybrid contribution 0.135 -0.724 -1.638 1.796 sum 17.390 -6.547 12.550 22.423 Atomic orbital electron populations 1.21781 0.93065 1.00790 1.04246 1.21914 0.98602 0.93792 1.02280 1.20587 0.88386 0.95209 0.91636 0.87405 1.44850 1.18596 1.60266 1.16087 1.15866 0.80778 0.78458 0.84546 1.90870 1.58463 1.66198 1.32230 1.45140 1.20421 1.57538 1.13883 1.20861 0.80967 0.95645 0.96525 1.19053 0.98916 0.86858 0.92729 1.20353 0.96653 1.21654 1.14747 0.92296 1.24964 0.95490 0.96661 0.95917 1.69993 1.02849 1.38847 1.39464 0.86650 0.77336 0.82272 0.82117 1.20644 1.21242 1.19883 1.23024 0.96906 1.04949 1.00058 1.22471 0.91443 1.03407 1.00766 1.20877 0.90045 0.75141 0.83269 1.90694 1.71387 1.49124 1.29397 1.48081 1.07015 1.73526 1.06472 1.22692 0.98258 1.00452 0.84344 1.23078 0.81488 0.96570 1.01849 1.87978 1.20356 1.93166 1.28264 1.22996 0.98039 0.97490 0.84398 1.22318 0.79740 0.99523 1.03078 0.91588 0.93438 0.91486 0.91277 0.91417 0.76146 0.77042 0.91115 0.94858 0.92923 0.91691 0.90417 0.89601 0.91761 0.89873 0.87960 0.92295 0.87249 0.92470 0.87491 0.87880 0.90427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.01 8.42 37.16 0.31 -1.70 16 2 C -0.13 -1.48 5.46 -26.73 -0.15 -1.62 16 3 C 0.15 1.92 1.86 -69.08 -0.13 1.79 16 4 H 0.11 1.36 6.07 -51.93 -0.32 1.05 16 5 N -0.74 -11.15 4.93 -59.82 -0.29 -11.44 16 6 C 0.70 13.02 6.87 -86.92 -0.60 12.42 16 7 O -0.60 -12.48 13.46 5.29 0.07 -12.41 16 8 N -0.72 -13.93 5.47 -65.22 -0.36 -14.29 16 9 C 0.18 4.12 5.51 -4.04 -0.02 4.10 16 10 C 0.03 0.59 1.41 -155.66 -0.22 0.37 16 11 C -0.50 -12.83 8.73 -34.44 -0.30 -13.13 16 12 H 0.06 1.51 7.81 -52.49 -0.41 1.10 16 13 C 0.07 1.96 5.43 -17.82 -0.10 1.86 16 14 N -0.88 -24.28 12.72 55.43 0.71 -23.58 16 15 Si 0.89 20.76 29.54 -169.99 -5.02 15.74 16 16 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 17 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 18 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 19 C -0.21 -4.41 9.96 -26.69 -0.27 -4.68 16 20 C -0.14 -3.26 9.23 -26.70 -0.25 -3.51 16 21 C 0.52 6.32 6.90 -10.98 -0.08 6.25 16 22 O -0.53 -7.93 15.52 5.56 0.09 -7.84 16 23 N -0.62 -5.81 3.01 -172.03 -0.52 -6.33 16 24 C 0.07 0.46 6.32 -3.32 -0.02 0.44 16 25 C 0.05 0.29 7.00 37.52 0.26 0.56 16 26 O -0.38 -3.03 10.74 -35.23 -0.38 -3.41 16 27 C 0.05 0.32 6.99 37.31 0.26 0.58 16 28 C 0.08 0.61 6.65 -3.54 -0.02 0.59 16 29 H 0.07 1.17 5.81 -51.93 -0.30 0.87 16 30 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.07 0.99 7.44 -51.93 -0.39 0.61 16 32 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 33 H 0.07 0.60 7.36 -51.92 -0.38 0.22 16 34 H 0.40 5.85 7.83 -40.82 -0.32 5.53 16 35 H 0.40 7.16 8.47 -40.82 -0.35 6.82 16 36 H 0.07 1.82 8.13 -51.93 -0.42 1.40 16 37 H 0.03 0.73 8.09 -51.93 -0.42 0.31 16 38 H 0.26 6.98 8.32 -40.82 -0.34 6.64 16 39 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 40 H 0.08 1.60 8.14 -51.93 -0.42 1.18 16 41 H 0.09 2.10 8.14 -51.93 -0.42 1.68 16 42 H 0.06 1.39 8.14 -51.93 -0.42 0.97 16 43 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.10 0.67 5.02 -51.93 -0.26 0.41 16 45 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 46 H 0.11 0.46 8.14 -51.93 -0.42 0.04 16 47 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 48 H 0.11 0.50 8.14 -51.93 -0.42 0.08 16 49 H 0.10 0.92 7.07 -51.93 -0.37 0.55 16 50 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 LS Contribution 398.55 15.07 6.01 6.01 Total: -1.00 -31.45 398.55 -9.15 -40.60 By element: Atomic # 1 Polarization: 20.77 SS G_CDS: -8.14 Total: 12.63 kcal Atomic # 6 Polarization: 5.62 SS G_CDS: -1.31 Total: 4.32 kcal Atomic # 7 Polarization: -55.17 SS G_CDS: -0.46 Total: -55.64 kcal Atomic # 8 Polarization: -23.43 SS G_CDS: -0.22 Total: -23.66 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -31.45 -9.15 -40.60 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430843974.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.750 kcal (2) G-P(sol) polarization free energy of solvation -31.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds