Wall clock time and date at job start Tue Mar 31 2020 23:06:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47099 * 2 1 4 4 C 1.52991 * 109.47393 * 239.99671 * 2 1 3 5 5 O 1.45204 * 109.47186 * 119.99367 * 2 1 3 6 6 C 1.34639 * 116.99595 * 60.00274 * 5 2 1 7 7 O 1.21512 * 120.00330 * 359.97438 * 6 5 2 8 8 N 1.34778 * 119.99931 * 180.02562 * 6 5 2 9 9 C 1.46497 * 119.99970 * 179.97438 * 8 6 5 10 10 H 1.09002 * 110.88644 * 328.81085 * 9 8 6 11 11 C 1.54626 * 110.96754 * 92.62238 * 9 8 6 12 12 C 1.51282 * 104.19747 * 142.91642 * 11 9 8 13 13 O 1.21283 * 124.94459 * 163.70790 * 12 11 9 14 14 N 1.34423 * 110.11517 * 343.74554 * 12 11 9 15 15 C 1.46496 * 124.35134 * 179.57309 * 14 12 11 16 16 N 1.46510 * 109.47069 * 270.02148 * 15 14 12 17 17 C 1.36935 * 119.99447 * 89.99693 * 16 15 14 18 18 H 1.08007 * 119.99841 * 217.89564 * 17 16 15 19 19 C 1.38813 * 120.00055 * 37.90896 * 17 16 15 20 20 N 1.31614 * 120.00464 * 20.44317 * 19 17 16 21 21 Si 1.86804 * 119.99634 * 200.44621 * 19 17 16 22 22 H 1.48501 * 109.47528 * 359.97438 * 21 19 17 23 23 H 1.48503 * 109.46990 * 119.99903 * 21 19 17 24 24 H 1.48503 * 109.46900 * 239.99635 * 21 19 17 25 25 C 1.46495 * 119.99877 * 270.00258 * 16 15 14 26 26 C 1.53000 * 117.49458 * 194.26250 * 25 16 15 27 27 C 1.52998 * 60.00222 * 252.51224 * 26 25 16 28 28 C 1.46764 * 111.29792 * 359.59330 * 14 12 11 29 29 H 1.09003 * 109.47401 * 300.00473 * 1 2 3 30 30 H 1.09003 * 109.47203 * 60.00524 * 1 2 3 31 31 H 1.08998 * 109.46954 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47240 * 180.02562 * 3 2 1 33 33 H 1.09003 * 109.47187 * 299.99742 * 3 2 1 34 34 H 1.08995 * 109.47423 * 59.99861 * 3 2 1 35 35 H 1.08998 * 109.47003 * 299.99888 * 4 2 1 36 36 H 1.09003 * 109.47106 * 59.99745 * 4 2 1 37 37 H 1.09003 * 109.47607 * 179.97438 * 4 2 1 38 38 H 0.97005 * 119.99888 * 359.97438 * 8 6 5 39 39 H 1.09008 * 110.48776 * 261.59136 * 11 9 8 40 40 H 1.08995 * 110.49002 * 24.23936 * 11 9 8 41 41 H 1.08996 * 109.47293 * 30.01933 * 15 14 12 42 42 H 1.09000 * 109.47117 * 150.02661 * 15 14 12 43 43 H 0.96996 * 120.00584 * 174.91656 * 20 19 17 44 44 H 1.08995 * 115.55403 * 339.96591 * 25 16 15 45 45 H 1.08997 * 117.50402 * 0.02562 * 26 25 16 46 46 H 1.09004 * 117.50016 * 145.02215 * 26 25 16 47 47 H 1.09005 * 117.49547 * 252.51389 * 27 26 25 48 48 H 1.08994 * 117.49919 * 107.48859 * 27 26 25 49 49 H 1.09003 * 110.24781 * 258.01444 * 28 14 12 50 50 H 1.09003 * 110.24284 * 136.01795 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2491 5 8 2.0140 -0.6844 1.1857 6 6 1.6522 -1.9722 1.3385 7 8 0.9509 -2.5094 0.5042 8 7 2.0672 -2.6653 2.4174 9 6 1.6731 -4.0664 2.5839 10 1 0.6929 -4.2494 2.1436 11 6 2.7357 -5.0152 1.9828 12 6 2.7637 -6.1912 2.9341 13 8 3.2506 -7.2739 2.6860 14 7 2.1698 -5.8617 4.0941 15 6 2.0162 -6.7716 5.2318 16 7 0.7499 -7.4982 5.1086 17 6 0.7084 -8.6931 4.4411 18 1 -0.1434 -8.9373 3.8235 19 6 1.7608 -9.5905 4.5583 20 7 2.5860 -9.5073 5.5803 21 14 2.0061 -10.9164 3.2654 22 1 0.9511 -10.7966 2.2272 23 1 3.3413 -10.7532 2.6362 24 1 1.9205 -12.2537 3.9055 25 6 -0.4717 -6.9462 5.6994 26 6 -1.6753 -7.8810 5.8357 27 6 -1.6837 -6.7717 4.7820 28 6 1.6945 -4.4733 4.0740 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6766 1.9564 0.8899 35 1 1.6767 -1.7489 -1.2490 36 1 1.6766 -0.2075 -2.1392 37 1 3.1300 -0.7209 -1.2494 38 1 2.6268 -2.2363 3.0836 39 1 2.4379 -5.3386 0.9853 40 1 3.7095 -4.5266 1.9515 41 1 2.8429 -7.4819 5.2432 42 1 2.0171 -6.1979 6.1586 43 1 3.2761 -10.1779 5.7023 44 1 -0.3211 -6.2020 6.4814 45 1 -1.5580 -8.9067 5.4862 46 1 -2.3167 -7.7519 6.7075 47 1 -2.3307 -5.9128 4.9607 48 1 -1.5721 -7.0676 3.7389 49 1 2.3785 -3.8323 4.6303 50 1 0.6914 -4.4119 4.4962 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000495125312.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:06:04 Heat of formation + Delta-G solvation = -77.003569 kcal Electronic energy + Delta-G solvation = -31098.323550 eV Core-core repulsion = 26933.907734 eV Total energy + Delta-G solvation = -4164.415816 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 3.62 seconds Orbital eigenvalues (eV) -41.93485 -41.08175 -38.72184 -38.47891 -37.20887 -35.76535 -35.19109 -34.52846 -32.66337 -30.90719 -28.37878 -28.31211 -28.24154 -27.27147 -25.19176 -23.95832 -22.93783 -22.22808 -21.73719 -21.19621 -20.40386 -19.28529 -18.57242 -17.81159 -17.58372 -17.15223 -17.03101 -16.90413 -16.34582 -16.25473 -15.65113 -15.60894 -15.33542 -15.07143 -14.79370 -14.62074 -14.34383 -14.18728 -13.98778 -13.51902 -13.30581 -13.21175 -13.08055 -12.91348 -12.86731 -12.81704 -12.80237 -12.73537 -12.44001 -12.39873 -12.26747 -12.21491 -12.15356 -11.92171 -11.54120 -11.34864 -11.11170 -10.97288 -10.83608 -10.43932 -10.18671 -9.54169 -8.55104 -7.97321 -5.51198 1.08165 1.30984 1.44667 1.45254 1.72969 1.82157 2.35779 2.50424 3.07406 3.20050 3.41397 3.50446 3.52303 3.56780 3.79968 3.84995 3.97465 3.99828 4.01823 4.30954 4.43535 4.51256 4.52387 4.55408 4.60393 4.66182 4.68710 4.71428 4.81470 4.81906 4.86872 4.92657 4.93485 4.96585 5.06969 5.15299 5.28117 5.33476 5.35672 5.40672 5.43806 5.57300 5.60540 5.65331 5.91028 6.38123 6.41297 6.54867 7.10931 7.36196 7.46594 7.78842 8.23989 9.04390 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.016704 B = 0.002915 C = 0.002717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.840064 B = 9603.146894 C =10304.749678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.126 3.874 3 C -0.135 4.135 4 C -0.182 4.182 5 O -0.364 6.364 6 C 0.650 3.350 7 O -0.591 6.591 8 N -0.683 5.683 9 C 0.172 3.828 10 H 0.099 0.901 11 C -0.158 4.158 12 C 0.503 3.497 13 O -0.577 6.577 14 N -0.615 5.615 15 C 0.362 3.638 16 N -0.556 5.556 17 C -0.259 4.259 18 H 0.039 0.961 19 C 0.001 3.999 20 N -0.907 5.907 21 Si 0.940 3.060 22 H -0.280 1.280 23 H -0.301 1.301 24 H -0.281 1.281 25 C 0.106 3.894 26 C -0.195 4.195 27 C -0.203 4.203 28 C 0.102 3.898 29 H 0.065 0.935 30 H 0.088 0.912 31 H 0.060 0.940 32 H 0.069 0.931 33 H 0.100 0.900 34 H 0.072 0.928 35 H 0.059 0.941 36 H 0.089 0.911 37 H 0.062 0.938 38 H 0.423 0.577 39 H 0.089 0.911 40 H 0.120 0.880 41 H 0.084 0.916 42 H 0.080 0.920 43 H 0.253 0.747 44 H 0.122 0.878 45 H 0.065 0.935 46 H 0.106 0.894 47 H 0.110 0.890 48 H 0.055 0.945 49 H 0.106 0.894 50 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.046 25.796 -5.073 26.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.090 3.910 3 C -0.192 4.192 4 C -0.240 4.240 5 O -0.278 6.278 6 C 0.404 3.596 7 O -0.482 6.482 8 N -0.344 5.344 9 C 0.066 3.934 10 H 0.117 0.883 11 C -0.199 4.199 12 C 0.289 3.711 13 O -0.456 6.456 14 N -0.353 5.353 15 C 0.155 3.845 16 N -0.274 5.274 17 C -0.389 4.389 18 H 0.057 0.943 19 C -0.198 4.198 20 N -0.550 5.550 21 Si 0.770 3.230 22 H -0.205 1.205 23 H -0.229 1.229 24 H -0.208 1.208 25 C -0.002 4.002 26 C -0.234 4.234 27 C -0.243 4.243 28 C -0.022 4.022 29 H 0.084 0.916 30 H 0.107 0.893 31 H 0.079 0.921 32 H 0.088 0.912 33 H 0.118 0.882 34 H 0.091 0.909 35 H 0.078 0.922 36 H 0.107 0.893 37 H 0.081 0.919 38 H 0.261 0.739 39 H 0.107 0.893 40 H 0.138 0.862 41 H 0.101 0.899 42 H 0.097 0.903 43 H 0.063 0.937 44 H 0.139 0.861 45 H 0.083 0.917 46 H 0.124 0.876 47 H 0.128 0.872 48 H 0.074 0.926 49 H 0.124 0.876 50 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -1.956 24.911 -5.516 25.589 hybrid contribution 0.383 -1.409 -0.728 1.631 sum -1.573 23.502 -6.245 24.369 Atomic orbital electron populations 1.22483 0.94011 1.03656 1.03664 1.22400 0.94552 0.92714 0.81361 1.21881 1.02456 0.90494 1.04376 1.22492 1.01679 1.02204 0.97579 1.86314 1.71461 1.22703 1.47327 1.18199 0.78454 0.80845 0.82150 1.90933 1.42086 1.71084 1.44057 1.44403 1.55287 1.10878 1.23789 1.21440 0.97891 0.78114 0.95948 0.88274 1.22778 1.02681 0.95180 0.99301 1.21297 0.77234 0.88358 0.84170 1.90706 1.48732 1.27295 1.78905 1.50033 1.55888 1.13128 1.16252 1.21019 0.90317 0.87944 0.85188 1.44063 1.04433 1.19015 1.59890 1.18703 1.04256 0.94676 1.21272 0.94286 1.25422 0.98693 0.98733 0.96929 1.69842 1.21216 1.35799 1.28115 0.85664 0.77120 0.79693 0.80540 1.20476 1.22872 1.20794 1.21506 0.82379 0.99066 0.97221 1.23045 1.03271 0.95732 1.01329 1.23251 1.05002 1.00774 0.95318 1.22346 1.02430 0.82765 0.94652 0.91622 0.89296 0.92111 0.91161 0.88159 0.90924 0.92168 0.89252 0.91913 0.73871 0.89287 0.86151 0.89886 0.90251 0.93743 0.86095 0.91668 0.87583 0.87195 0.92605 0.87602 0.88821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.98 8.37 71.98 0.60 -2.38 16 2 C 0.13 2.05 1.13 -10.80 -0.01 2.03 16 3 C -0.14 -1.31 8.85 71.98 0.64 -0.67 16 4 C -0.18 -3.14 8.37 71.98 0.60 -2.54 16 5 O -0.36 -7.12 9.94 -55.49 -0.55 -7.67 16 6 C 0.65 14.94 8.06 129.79 1.05 15.99 16 7 O -0.59 -17.28 11.52 19.80 0.23 -17.05 16 8 N -0.68 -12.67 5.16 -565.08 -2.91 -15.58 16 9 C 0.17 4.09 3.53 46.05 0.16 4.25 16 10 H 0.10 2.76 7.54 -2.39 -0.02 2.74 16 11 C -0.16 -4.68 6.59 30.59 0.20 -4.48 16 12 C 0.50 20.83 8.02 87.90 0.71 21.54 16 13 O -0.58 -31.11 17.59 -3.04 -0.05 -31.17 16 14 N -0.62 -22.47 3.17 -829.70 -2.63 -25.10 16 15 C 0.36 15.81 6.13 170.96 1.05 16.85 16 16 N -0.56 -26.15 3.02 -689.68 -2.09 -28.23 16 17 C -0.26 -14.35 8.04 84.03 0.68 -13.67 16 18 H 0.04 2.29 7.21 -2.91 -0.02 2.27 16 19 C 0.00 0.08 4.98 84.86 0.42 0.50 16 20 N -0.91 -53.38 11.43 21.65 0.25 -53.13 16 21 Si 0.94 49.78 29.60 68.60 2.03 51.81 16 22 H -0.28 -14.67 7.11 99.48 0.71 -13.96 16 23 H -0.30 -16.84 7.11 99.48 0.71 -16.14 16 24 H -0.28 -14.18 7.11 99.48 0.71 -13.47 16 25 C 0.11 4.02 6.62 44.99 0.30 4.32 16 26 C -0.20 -7.24 9.81 30.59 0.30 -6.94 16 27 C -0.20 -7.03 10.08 30.59 0.31 -6.72 16 28 C 0.10 2.39 7.08 86.83 0.61 3.00 16 29 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.06 1.39 5.88 -2.39 -0.01 1.37 16 32 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 34 H 0.07 0.64 8.14 -2.39 -0.02 0.63 16 35 H 0.06 1.43 5.88 -2.39 -0.01 1.41 16 36 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.42 5.22 8.54 -92.70 -0.79 4.43 16 39 H 0.09 2.85 8.14 -2.38 -0.02 2.83 16 40 H 0.12 3.02 8.08 -2.39 -0.02 3.00 16 41 H 0.08 4.50 5.28 -2.39 -0.01 4.48 16 42 H 0.08 2.94 8.04 -2.39 -0.02 2.92 16 43 H 0.25 14.64 8.32 -92.71 -0.77 13.87 16 44 H 0.12 3.79 8.10 -2.39 -0.02 3.77 16 45 H 0.06 2.89 6.96 -2.39 -0.02 2.87 16 46 H 0.11 3.24 8.14 -2.38 -0.02 3.22 16 47 H 0.11 3.01 8.14 -2.38 -0.02 2.99 16 48 H 0.06 2.26 7.98 -2.39 -0.02 2.24 16 49 H 0.11 1.72 7.80 -2.39 -0.02 1.70 16 50 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 Total: -1.00 -76.48 403.57 2.04 -74.44 By element: Atomic # 1 Polarization: 20.45 SS G_CDS: 0.15 Total: 20.60 kcal Atomic # 6 Polarization: 23.47 SS G_CDS: 7.61 Total: 31.08 kcal Atomic # 7 Polarization: -114.66 SS G_CDS: -7.38 Total: -122.05 kcal Atomic # 8 Polarization: -55.51 SS G_CDS: -0.38 Total: -55.89 kcal Atomic # 14 Polarization: 49.78 SS G_CDS: 2.03 Total: 51.81 kcal Total: -76.48 2.04 -74.44 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495125312.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.559 kcal (2) G-P(sol) polarization free energy of solvation -76.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.62 seconds