Wall clock time and date at job start Tue Mar 31 2020 22:47:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47223 * 2 1 4 4 C 1.53002 * 109.47240 * 239.99424 * 2 1 3 5 5 O 1.45201 * 109.46890 * 119.99853 * 2 1 3 6 6 C 1.34640 * 117.00180 * 59.99587 * 5 2 1 7 7 O 1.21515 * 119.99957 * 0.02562 * 6 5 2 8 8 N 1.34769 * 120.00213 * 179.97438 * 6 5 2 9 9 C 1.47585 * 134.49131 * 0.02562 * 8 6 5 10 10 C 1.53951 * 86.11677 * 204.63644 * 9 8 6 11 11 C 1.47583 * 134.49258 * 180.02562 * 8 6 5 12 12 H 1.09006 * 113.87136 * 269.67144 * 11 8 6 13 13 C 1.50698 * 113.76959 * 41.06258 * 11 8 6 14 14 O 1.21279 * 120.00158 * 356.49242 * 13 11 8 15 15 N 1.34778 * 119.99766 * 176.49639 * 13 11 8 16 16 C 1.46966 * 120.59146 * 179.97438 * 15 13 11 17 17 C 1.53376 * 108.63466 * 235.24493 * 16 15 13 18 18 N 1.46968 * 108.63457 * 310.57917 * 17 16 15 19 19 C 1.36937 * 120.59055 * 235.20386 * 18 17 16 20 20 H 1.07997 * 120.00034 * 28.27851 * 19 18 17 21 21 C 1.38806 * 119.99615 * 208.56371 * 19 18 17 22 22 N 1.31620 * 120.00437 * 17.30811 * 21 19 18 23 23 Si 1.86800 * 119.99904 * 197.31053 * 21 19 18 24 24 H 1.48502 * 109.47086 * 359.97438 * 23 21 19 25 25 H 1.48503 * 109.47060 * 119.99742 * 23 21 19 26 26 H 1.48496 * 109.47229 * 239.99810 * 23 21 19 27 27 C 1.46960 * 118.81400 * 55.47579 * 18 17 16 28 28 C 1.46965 * 120.59722 * 0.02562 * 15 13 11 29 29 H 1.09000 * 109.47540 * 300.00322 * 1 2 3 30 30 H 1.09002 * 109.46974 * 60.00255 * 1 2 3 31 31 H 1.09001 * 109.47307 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46728 * 180.02562 * 3 2 1 33 33 H 1.09002 * 109.46938 * 299.99767 * 3 2 1 34 34 H 1.09000 * 109.47126 * 59.99424 * 3 2 1 35 35 H 1.09001 * 109.47252 * 300.00379 * 4 2 1 36 36 H 1.09002 * 109.46874 * 60.00261 * 4 2 1 37 37 H 1.08999 * 109.47056 * 180.02562 * 4 2 1 38 38 H 1.08997 * 113.77084 * 90.33846 * 9 8 6 39 39 H 1.08997 * 113.76787 * 318.93381 * 9 8 6 40 40 H 1.08994 * 113.74159 * 222.04715 * 10 9 8 41 41 H 1.09005 * 113.83652 * 90.74767 * 10 9 8 42 42 H 1.08997 * 109.60957 * 115.50322 * 16 15 13 43 43 H 1.08992 * 109.61068 * 354.99229 * 16 15 13 44 44 H 1.08998 * 109.60957 * 190.83139 * 17 16 15 45 45 H 1.09000 * 109.74621 * 70.40439 * 17 16 15 46 46 H 0.96998 * 120.00790 * 179.97438 * 22 21 19 47 47 H 1.09011 * 109.61027 * 64.26353 * 27 18 17 48 48 H 1.09000 * 109.60956 * 184.77581 * 27 18 17 49 49 H 1.08998 * 109.61178 * 244.50230 * 28 15 13 50 50 H 1.08998 * 109.60934 * 5.00970 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 -1.2492 5 8 2.0139 -0.6845 1.1856 6 6 1.6521 -1.9723 1.3385 7 8 0.9514 -2.5097 0.5037 8 7 2.0678 -2.6656 2.4168 9 6 2.9007 -2.3475 3.5929 10 6 3.1943 -3.8572 3.6624 11 6 1.8730 -4.0479 2.8957 12 1 1.0042 -4.1725 3.5421 13 6 1.9480 -5.0850 1.8049 14 8 2.0891 -4.7416 0.6503 15 7 1.8582 -6.3941 2.1124 16 6 1.9292 -7.4164 1.0590 17 6 0.6791 -8.3006 1.1491 18 7 0.5081 -8.7313 2.5438 19 6 0.4160 -10.0614 2.8561 20 1 0.8984 -10.7976 2.2303 21 6 -0.3022 -10.4637 3.9736 22 7 -1.1638 -9.6411 4.5336 23 14 -0.0462 -12.1727 4.6830 24 1 0.9687 -12.8967 3.8760 25 1 0.4252 -12.0604 6.0868 26 1 -1.3291 -12.9198 4.6499 27 6 0.4315 -7.7088 3.5966 28 6 1.6865 -6.8249 3.5070 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 3.1300 1.4424 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6766 1.9564 0.8899 35 1 1.6767 -1.7490 -1.2491 36 1 1.6767 -0.2076 -2.1392 37 1 3.1300 -0.7218 -1.2489 38 1 2.3336 -1.9707 4.4439 39 1 3.7754 -1.7402 3.3604 40 1 3.1768 -4.2615 4.6744 41 1 4.0765 -4.1608 3.0986 42 1 2.8204 -8.0275 1.2017 43 1 1.9662 -6.9336 0.0826 44 1 0.8020 -9.1741 0.5089 45 1 -0.1962 -7.7342 0.8312 46 1 -1.6660 -9.9224 5.3143 47 1 -0.4598 -7.0986 3.4498 48 1 0.3908 -8.1914 4.5730 49 1 2.5605 -7.3936 3.8245 50 1 1.5632 -5.9513 4.1471 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000495550141.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:05 Heat of formation + Delta-G solvation = -58.783940 kcal Electronic energy + Delta-G solvation = -31394.307542 eV Core-core repulsion = 27230.681788 eV Total energy + Delta-G solvation = -4163.625754 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.13302 -41.11494 -39.59688 -38.18752 -37.47263 -35.59189 -35.01092 -33.29849 -31.92086 -30.72315 -29.17348 -28.39945 -28.30116 -27.79752 -25.39671 -24.49306 -24.02347 -22.71808 -21.66358 -20.64601 -19.93795 -19.15389 -18.77591 -17.96951 -17.65166 -17.27625 -16.80027 -16.62606 -16.26132 -15.87598 -15.51933 -15.46633 -15.31805 -15.13091 -14.98858 -14.96519 -14.27185 -14.13577 -13.91209 -13.56729 -13.33836 -13.31609 -13.19773 -13.09845 -12.89870 -12.85341 -12.75177 -12.68394 -12.54930 -12.46579 -12.30950 -12.21882 -12.10367 -12.01033 -11.85906 -11.65021 -11.36703 -11.02566 -10.73222 -10.58311 -9.82393 -9.77818 -8.65336 -7.87989 -5.36500 0.87764 1.48931 1.52161 1.59851 1.62204 1.82612 2.09419 2.52436 2.80065 3.26452 3.29745 3.44931 3.59131 3.75098 3.78289 3.87549 3.93472 4.09464 4.19687 4.23685 4.29945 4.37534 4.44930 4.54705 4.57504 4.58726 4.63158 4.67156 4.72628 4.75315 4.79791 4.80324 4.86559 4.88463 4.92109 5.05193 5.10875 5.16817 5.23799 5.26314 5.34466 5.51828 5.55841 5.61759 5.67733 6.36294 6.46957 6.63242 7.11770 7.17868 7.40119 7.78259 8.32669 9.17284 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.024458 B = 0.002596 C = 0.002516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.545690 B =10785.174738 C =11126.290026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.125 3.875 3 C -0.130 4.130 4 C -0.178 4.178 5 O -0.365 6.365 6 C 0.659 3.341 7 O -0.578 6.578 8 N -0.631 5.631 9 C 0.115 3.885 10 C -0.119 4.119 11 C 0.128 3.872 12 H 0.135 0.865 13 C 0.497 3.503 14 O -0.563 6.563 15 N -0.599 5.599 16 C 0.110 3.890 17 C 0.133 3.867 18 N -0.608 5.608 19 C -0.264 4.264 20 H 0.068 0.932 21 C -0.045 4.045 22 N -0.933 5.933 23 Si 0.969 3.031 24 H -0.269 1.269 25 H -0.283 1.283 26 H -0.297 1.297 27 C 0.160 3.840 28 C 0.097 3.903 29 H 0.066 0.934 30 H 0.091 0.909 31 H 0.050 0.950 32 H 0.070 0.930 33 H 0.102 0.898 34 H 0.074 0.926 35 H 0.049 0.951 36 H 0.091 0.909 37 H 0.058 0.942 38 H 0.122 0.878 39 H 0.100 0.900 40 H 0.143 0.857 41 H 0.092 0.908 42 H 0.076 0.924 43 H 0.073 0.927 44 H 0.071 0.929 45 H -0.001 1.001 46 H 0.253 0.747 47 H -0.006 1.006 48 H 0.081 0.919 49 H 0.081 0.919 50 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.157 21.113 0.735 23.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.088 3.912 3 C -0.187 4.187 4 C -0.235 4.235 5 O -0.281 6.281 6 C 0.416 3.584 7 O -0.467 6.467 8 N -0.375 5.375 9 C -0.005 4.005 10 C -0.156 4.156 11 C 0.023 3.977 12 H 0.153 0.847 13 C 0.284 3.716 14 O -0.441 6.441 15 N -0.332 5.332 16 C -0.014 4.014 17 C 0.006 3.994 18 N -0.331 5.331 19 C -0.394 4.394 20 H 0.085 0.915 21 C -0.241 4.241 22 N -0.579 5.579 23 Si 0.798 3.202 24 H -0.193 1.193 25 H -0.209 1.209 26 H -0.225 1.225 27 C 0.034 3.966 28 C -0.026 4.026 29 H 0.085 0.915 30 H 0.110 0.890 31 H 0.069 0.931 32 H 0.089 0.911 33 H 0.121 0.879 34 H 0.093 0.907 35 H 0.068 0.932 36 H 0.109 0.891 37 H 0.077 0.923 38 H 0.140 0.860 39 H 0.118 0.882 40 H 0.161 0.839 41 H 0.111 0.889 42 H 0.094 0.906 43 H 0.092 0.908 44 H 0.089 0.911 45 H 0.017 0.983 46 H 0.062 0.938 47 H 0.012 0.988 48 H 0.099 0.901 49 H 0.099 0.901 50 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 10.851 21.287 -0.256 23.895 hybrid contribution -0.883 -1.345 -0.179 1.619 sum 9.968 19.942 -0.434 22.299 Atomic orbital electron populations 1.22445 0.94312 1.03062 1.03671 1.22402 0.94418 0.92935 0.81417 1.21849 1.02401 0.89927 1.04490 1.22439 1.01344 1.01813 0.97912 1.86267 1.72025 1.22655 1.47135 1.17822 0.78401 0.80441 0.81784 1.90953 1.41742 1.70453 1.43560 1.48771 1.55016 1.12318 1.21406 1.23516 0.94202 0.97005 0.85788 1.23620 0.93328 0.95995 1.02704 1.23081 1.03654 0.78988 0.92009 0.84748 1.21107 0.76586 0.83554 0.90354 1.90738 1.50440 1.80686 1.22256 1.48091 1.70923 1.04859 1.09334 1.21912 0.98928 0.89413 0.91146 1.21321 0.94186 0.96528 0.87342 1.44298 1.85036 1.02780 1.01019 1.19538 1.25713 0.83907 1.10234 0.91452 1.25792 0.95748 1.01248 1.01291 1.70166 1.26008 1.37808 1.23890 0.85186 0.77042 0.79789 0.78224 1.19310 1.20939 1.22488 1.21172 0.92498 0.88945 0.94020 1.22614 0.99727 0.99832 0.80449 0.91533 0.89041 0.93141 0.91124 0.87949 0.90737 0.93240 0.89056 0.92280 0.86040 0.88206 0.83945 0.88926 0.90565 0.90820 0.91103 0.98305 0.93817 0.98800 0.90104 0.90071 0.87102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.15 8.37 71.98 0.60 -3.55 16 2 C 0.12 2.89 1.13 -10.79 -0.01 2.87 16 3 C -0.13 -1.83 8.85 71.98 0.64 -1.20 16 4 C -0.18 -4.50 8.37 71.98 0.60 -3.90 16 5 O -0.37 -10.22 9.87 -55.49 -0.55 -10.77 16 6 C 0.66 22.23 7.77 129.79 1.01 23.24 16 7 O -0.58 -24.28 10.47 26.76 0.28 -24.00 16 8 N -0.63 -17.10 3.41 -948.32 -3.23 -20.33 16 9 C 0.11 1.63 8.87 86.48 0.77 2.40 16 10 C -0.12 -1.72 7.48 31.26 0.23 -1.48 16 11 C 0.13 3.27 3.23 44.35 0.14 3.41 16 12 H 0.14 3.01 7.39 -2.38 -0.02 2.99 16 13 C 0.50 17.76 7.19 87.66 0.63 18.39 16 14 O -0.56 -25.27 13.67 17.81 0.24 -25.03 16 15 N -0.60 -21.14 2.95 -817.26 -2.41 -23.55 16 16 C 0.11 4.18 6.59 86.42 0.57 4.75 16 17 C 0.13 5.83 6.67 86.42 0.58 6.40 16 18 N -0.61 -29.81 2.96 -697.43 -2.06 -31.87 16 19 C -0.26 -13.99 9.57 84.03 0.80 -13.18 16 20 H 0.07 3.50 7.89 -2.91 -0.02 3.48 16 21 C -0.05 -2.40 4.91 84.86 0.42 -1.99 16 22 N -0.93 -52.60 11.19 21.65 0.24 -52.36 16 23 Si 0.97 42.87 29.59 68.60 2.03 44.90 16 24 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 25 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 26 H -0.30 -13.44 7.11 99.48 0.71 -12.73 16 27 C 0.16 7.10 5.54 86.55 0.48 7.57 16 28 C 0.10 3.09 6.46 86.55 0.56 3.65 16 29 H 0.07 1.39 8.14 -2.39 -0.02 1.38 16 30 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.05 1.60 5.88 -2.39 -0.01 1.59 16 32 H 0.07 0.94 8.14 -2.39 -0.02 0.93 16 33 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.05 1.72 5.88 -2.39 -0.01 1.71 16 36 H 0.09 1.77 8.14 -2.39 -0.02 1.76 16 37 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.12 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 40 H 0.14 0.96 8.14 -2.39 -0.02 0.94 16 41 H 0.09 1.52 8.09 -2.38 -0.02 1.51 16 42 H 0.08 2.67 8.14 -2.39 -0.02 2.66 16 43 H 0.07 2.90 6.99 -2.39 -0.02 2.89 16 44 H 0.07 2.96 7.93 -2.39 -0.02 2.95 16 45 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 46 H 0.25 13.72 8.31 -92.71 -0.77 12.95 16 47 H -0.01 -0.30 8.14 -2.38 -0.02 -0.32 16 48 H 0.08 3.93 5.99 -2.39 -0.01 3.92 16 49 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 50 H 0.11 2.56 5.63 -2.39 -0.01 2.54 16 Total: -1.00 -80.76 390.44 3.49 -77.27 By element: Atomic # 1 Polarization: 17.43 SS G_CDS: 0.93 Total: 18.35 kcal Atomic # 6 Polarization: 39.37 SS G_CDS: 8.02 Total: 47.39 kcal Atomic # 7 Polarization: -120.65 SS G_CDS: -7.46 Total: -128.11 kcal Atomic # 8 Polarization: -59.78 SS G_CDS: -0.02 Total: -59.80 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.90 kcal Total: -80.76 3.49 -77.27 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495550141.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.484 kcal (2) G-P(sol) polarization free energy of solvation -80.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds