Wall clock time and date at job start Tue Mar 31 2020 22:47:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.47078 * 2 1 4 4 C 1.53001 * 109.47450 * 240.00481 * 2 1 3 5 5 O 1.45195 * 109.47298 * 119.99947 * 2 1 3 6 6 C 1.34635 * 116.99770 * 60.00149 * 5 2 1 7 7 O 1.21512 * 120.00384 * 0.02562 * 6 5 2 8 8 N 1.34782 * 120.00266 * 180.02562 * 6 5 2 9 9 C 1.46542 * 119.73915 * 0.02562 * 8 6 5 10 10 C 1.53185 * 108.22094 * 236.45254 * 9 8 6 11 11 C 1.53066 * 109.21745 * 301.55141 * 10 9 8 12 12 H 1.09006 * 114.39193 * 275.11562 * 11 10 9 13 13 C 1.54100 * 111.37211 * 142.60798 * 11 10 9 14 14 N 1.47698 * 87.55251 * 273.84260 * 13 11 10 15 15 C 1.46898 * 111.00104 * 220.17901 * 14 13 11 16 16 C 1.50698 * 109.47559 * 294.38527 * 15 14 13 17 17 O 1.21300 * 119.99659 * 353.82088 * 16 15 14 18 18 N 1.34775 * 120.00140 * 173.82641 * 16 15 14 19 19 C 1.37104 * 119.99635 * 180.02562 * 18 16 15 20 20 H 1.07996 * 120.00364 * 359.97438 * 19 18 16 21 21 C 1.38950 * 119.99771 * 180.02562 * 19 18 16 22 22 N 1.31417 * 119.99995 * 359.97438 * 21 19 18 23 23 Si 1.86795 * 120.00102 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47509 * 59.99641 * 23 21 19 25 25 H 1.48504 * 109.47496 * 179.97438 * 23 21 19 26 26 H 1.48504 * 109.47076 * 299.99608 * 23 21 19 27 27 C 1.46871 * 86.86511 * 331.49310 * 14 13 11 28 28 H 1.08994 * 111.44312 * 276.27267 * 27 14 13 29 29 C 1.45700 * 119.74732 * 180.02562 * 8 6 5 30 30 H 1.08991 * 109.47162 * 299.99664 * 1 2 3 31 31 H 1.09003 * 109.46835 * 60.00046 * 1 2 3 32 32 H 1.08999 * 109.46567 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.47164 * 179.97438 * 3 2 1 34 34 H 1.08996 * 109.47338 * 300.00388 * 3 2 1 35 35 H 1.09004 * 109.46570 * 60.00133 * 3 2 1 36 36 H 1.09006 * 109.46739 * 299.99712 * 4 2 1 37 37 H 1.08996 * 109.46926 * 59.99637 * 4 2 1 38 38 H 1.08996 * 109.47117 * 180.02562 * 4 2 1 39 39 H 1.09001 * 109.71480 * 356.13377 * 9 8 6 40 40 H 1.08993 * 109.70871 * 116.72301 * 9 8 6 41 41 H 1.08996 * 109.51193 * 181.62854 * 10 9 8 42 42 H 1.09003 * 109.52077 * 61.47347 * 10 9 8 43 43 H 1.08997 * 113.53994 * 159.17478 * 13 11 10 44 44 H 1.08998 * 113.53969 * 28.51400 * 13 11 10 45 45 H 1.08999 * 109.47547 * 174.37930 * 15 14 13 46 46 H 1.09000 * 109.46909 * 54.38306 * 15 14 13 47 47 H 0.96995 * 120.00031 * 359.97438 * 18 16 15 48 48 H 0.96998 * 119.99872 * 180.02562 * 22 21 19 49 49 H 1.09003 * 108.78191 * 19.14191 * 29 8 6 50 50 H 1.08997 * 108.69314 * 260.87171 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7211 -1.2493 5 8 2.0140 -0.6844 1.1855 6 6 1.6523 -1.9723 1.3382 7 8 0.9517 -2.5097 0.5035 8 7 2.0672 -2.6655 2.4171 9 6 2.9115 -2.0116 3.4206 10 6 4.1986 -2.8288 3.5696 11 6 3.8424 -4.2591 3.9822 12 1 3.7071 -4.3977 5.0549 13 6 4.7699 -5.2865 3.3047 14 7 3.8463 -5.2658 2.1523 15 6 3.6541 -6.6163 1.6073 16 6 4.9533 -7.1139 1.0282 17 8 5.9118 -6.3733 0.9639 18 7 5.0502 -8.3818 0.5815 19 6 6.2324 -8.8346 0.0551 20 1 7.0858 -8.1753 -0.0020 21 6 6.3322 -10.1416 -0.4059 22 7 5.2936 -10.9438 -0.3369 23 14 7.9427 -10.7584 -1.1238 24 1 9.0126 -10.6568 -0.0991 25 1 7.7889 -12.1758 -1.5392 26 1 8.3070 -9.9332 -2.3034 27 6 2.7859 -4.9293 3.1112 28 1 2.3822 -5.8221 3.5885 29 6 1.6729 -4.0590 2.5765 30 1 -0.3633 0.5137 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3632 -1.0277 -0.0005 33 1 3.1299 1.4426 0.0005 34 1 1.6766 1.9564 -0.8899 35 1 1.6766 1.9563 0.8901 36 1 1.6768 -1.7489 -1.2493 37 1 1.6767 -0.2073 -2.1392 38 1 3.1300 -0.7215 -1.2490 39 1 3.1539 -1.0001 3.0946 40 1 2.3863 -1.9743 4.3749 41 1 4.8308 -2.3762 4.3335 42 1 4.7312 -2.8462 2.6186 43 1 4.8038 -6.2474 3.8181 44 1 5.7606 -4.8940 3.0757 45 1 2.8950 -6.5881 0.8256 46 1 3.3308 -7.2868 2.4036 47 1 4.2839 -8.9741 0.6331 48 1 5.3634 -11.8563 -0.6584 49 1 1.3579 -4.4476 1.6080 50 1 0.8290 -4.1067 3.2647 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000496228087.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:09 Heat of formation + Delta-G solvation = -95.602589 kcal Electronic energy + Delta-G solvation = -30998.837984 eV Core-core repulsion = 26833.615654 eV Total energy + Delta-G solvation = -4165.222330 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.43045 -41.51119 -39.85743 -38.39244 -36.79766 -35.96835 -34.88407 -33.48504 -33.12603 -31.31969 -29.22273 -28.35304 -28.26577 -27.41464 -25.62163 -24.58338 -23.79133 -22.57038 -21.15699 -20.62253 -19.97922 -19.47341 -18.75796 -17.83797 -17.65868 -17.33049 -17.09924 -16.64267 -16.51600 -15.97625 -15.73366 -15.60264 -15.55646 -15.22101 -14.90684 -14.63579 -14.48188 -14.15500 -13.96830 -13.54015 -13.44697 -13.36851 -13.14823 -13.04076 -12.99268 -12.91858 -12.83249 -12.79074 -12.49388 -12.45339 -12.34800 -12.24520 -12.15269 -11.83487 -11.58284 -11.52576 -11.35441 -11.24160 -10.99160 -10.37396 -10.06566 -9.78486 -9.64239 -8.50528 -5.99859 1.18352 1.36192 1.38069 1.49379 1.82884 1.99473 2.25384 2.80490 2.90406 3.15108 3.18428 3.38735 3.71171 3.78243 3.82507 3.97122 3.98456 4.02606 4.16790 4.23895 4.29316 4.42282 4.45403 4.46055 4.53221 4.60726 4.62547 4.66830 4.67769 4.77785 4.79320 4.84019 4.87636 4.88645 4.90337 5.04922 5.08368 5.14055 5.29991 5.35330 5.35720 5.40559 5.47849 5.49590 5.61605 5.89529 6.09427 6.35852 6.55412 7.07828 7.33780 7.50327 8.06095 8.66805 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.015338 B = 0.002612 C = 0.002426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1825.059053 B =10718.599712 C =11538.905263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.125 3.875 3 C -0.133 4.133 4 C -0.182 4.182 5 O -0.365 6.365 6 C 0.645 3.355 7 O -0.599 6.599 8 N -0.582 5.582 9 C 0.116 3.884 10 C -0.109 4.109 11 C -0.086 4.086 12 H 0.129 0.871 13 C 0.008 3.992 14 N -0.466 5.466 15 C 0.021 3.979 16 C 0.440 3.560 17 O -0.618 6.618 18 N -0.573 5.573 19 C -0.335 4.335 20 H 0.077 0.923 21 C -0.013 4.013 22 N -0.920 5.920 23 Si 0.994 3.006 24 H -0.270 1.270 25 H -0.268 1.268 26 H -0.274 1.274 27 C 0.018 3.982 28 H 0.107 0.893 29 C 0.148 3.852 30 H 0.068 0.932 31 H 0.088 0.912 32 H 0.058 0.942 33 H 0.064 0.936 34 H 0.101 0.899 35 H 0.076 0.924 36 H 0.055 0.945 37 H 0.091 0.909 38 H 0.051 0.949 39 H 0.095 0.905 40 H 0.103 0.897 41 H 0.105 0.895 42 H 0.042 0.958 43 H 0.065 0.935 44 H 0.059 0.941 45 H 0.095 0.905 46 H 0.083 0.917 47 H 0.396 0.604 48 H 0.279 0.721 49 H 0.067 0.933 50 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.356 21.339 10.442 26.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.089 3.911 3 C -0.190 4.190 4 C -0.239 4.239 5 O -0.279 6.279 6 C 0.400 3.600 7 O -0.490 6.490 8 N -0.322 5.322 9 C -0.005 4.005 10 C -0.147 4.147 11 C -0.104 4.104 12 H 0.147 0.853 13 C -0.121 4.121 14 N -0.189 5.189 15 C -0.111 4.111 16 C 0.228 3.772 17 O -0.504 6.504 18 N -0.210 5.210 19 C -0.464 4.464 20 H 0.095 0.905 21 C -0.212 4.212 22 N -0.561 5.561 23 Si 0.817 3.183 24 H -0.195 1.195 25 H -0.192 1.192 26 H -0.199 1.199 27 C -0.092 4.092 28 H 0.124 0.876 29 C 0.026 3.974 30 H 0.087 0.913 31 H 0.107 0.893 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.119 0.881 35 H 0.095 0.905 36 H 0.074 0.926 37 H 0.110 0.890 38 H 0.070 0.930 39 H 0.113 0.887 40 H 0.121 0.879 41 H 0.124 0.876 42 H 0.060 0.940 43 H 0.083 0.917 44 H 0.078 0.922 45 H 0.114 0.886 46 H 0.100 0.900 47 H 0.229 0.771 48 H 0.088 0.912 49 H 0.085 0.915 50 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -10.839 21.911 9.419 26.197 hybrid contribution 0.387 -1.971 -0.441 2.057 sum -10.452 19.939 8.978 24.237 Atomic orbital electron populations 1.22434 0.93566 1.03561 1.03712 1.22378 0.94843 0.92674 0.81216 1.21864 1.02198 0.90420 1.04533 1.22479 1.01134 1.02120 0.98159 1.86273 1.71565 1.23058 1.47020 1.18197 0.78942 0.81039 0.81817 1.90872 1.43162 1.70945 1.44045 1.46534 1.52866 1.11440 1.21323 1.21780 0.90327 0.96325 0.92088 1.21669 0.97574 0.93501 1.01988 1.22557 0.93459 0.94372 1.00058 0.85293 1.23865 0.97926 0.99209 0.91061 1.69004 1.06815 1.21325 1.21745 1.22393 0.94977 0.92385 1.01321 1.20679 0.90832 0.82263 0.83445 1.90491 1.41403 1.56764 1.61788 1.41942 1.13467 1.10926 1.54690 1.19608 0.91415 0.96761 1.38655 0.90478 1.26063 1.02312 0.95461 0.97398 1.69669 1.31360 1.07849 1.47208 0.84985 0.77326 0.77465 0.78539 1.19476 1.19245 1.19901 1.23224 0.93307 0.99600 0.93072 0.87559 1.20593 0.95899 0.78447 1.02482 0.91313 0.89273 0.92260 0.91674 0.88090 0.90480 0.92639 0.89049 0.92967 0.88691 0.87898 0.87650 0.93951 0.91705 0.92231 0.88642 0.89961 0.77062 0.91199 0.91465 0.88344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.36 8.37 71.98 0.60 -2.76 16 2 C 0.13 2.60 1.13 -10.79 -0.01 2.59 16 3 C -0.13 -1.79 8.85 71.98 0.64 -1.15 16 4 C -0.18 -4.34 8.37 71.98 0.60 -3.74 16 5 O -0.36 -9.12 8.43 -55.44 -0.47 -9.59 16 6 C 0.64 18.66 7.69 129.79 1.00 19.66 16 7 O -0.60 -20.64 11.25 19.80 0.22 -20.41 16 8 N -0.58 -14.06 2.99 -957.44 -2.86 -16.92 16 9 C 0.12 2.00 6.40 86.43 0.55 2.56 16 10 C -0.11 -2.14 5.69 30.68 0.17 -1.97 16 11 C -0.09 -1.71 4.55 -10.58 -0.05 -1.76 16 12 H 0.13 1.66 8.14 -2.38 -0.02 1.64 16 13 C 0.01 0.25 5.68 81.56 0.46 0.72 16 14 N -0.47 -15.77 5.78 -939.92 -5.43 -21.20 16 15 C 0.02 0.77 5.48 85.56 0.47 1.24 16 16 C 0.44 22.02 7.46 87.66 0.65 22.67 16 17 O -0.62 -35.72 14.96 -3.09 -0.05 -35.77 16 18 N -0.57 -30.58 5.29 -306.98 -1.62 -32.20 16 19 C -0.33 -19.59 9.68 84.04 0.81 -18.77 16 20 H 0.08 4.80 7.16 -2.91 -0.02 4.78 16 21 C -0.01 -0.68 5.50 84.93 0.47 -0.22 16 22 N -0.92 -50.70 13.05 21.66 0.28 -50.42 16 23 Si 0.99 43.85 29.55 68.60 2.03 45.87 16 24 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 25 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 26 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 27 C 0.02 0.41 3.09 39.14 0.12 0.53 16 28 H 0.11 1.99 7.50 -2.39 -0.02 1.97 16 29 C 0.15 3.43 6.23 85.90 0.54 3.96 16 30 H 0.07 1.14 8.14 -2.39 -0.02 1.13 16 31 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.06 1.52 5.88 -2.39 -0.01 1.50 16 33 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.08 0.87 8.14 -2.38 -0.02 0.85 16 36 H 0.05 1.72 5.88 -2.38 -0.01 1.71 16 37 H 0.09 1.67 8.14 -2.39 -0.02 1.66 16 38 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.09 1.61 6.82 -2.39 -0.02 1.60 16 40 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 41 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 42 H 0.04 1.21 7.68 -2.39 -0.02 1.19 16 43 H 0.06 1.95 7.86 -2.39 -0.02 1.93 16 44 H 0.06 2.20 7.84 -2.39 -0.02 2.18 16 45 H 0.10 3.44 8.14 -2.39 -0.02 3.42 16 46 H 0.08 2.55 7.46 -2.39 -0.02 2.53 16 47 H 0.40 20.07 7.90 -92.71 -0.73 19.34 16 48 H 0.28 14.35 8.31 -92.71 -0.77 13.58 16 49 H 0.07 1.98 7.04 -2.39 -0.02 1.97 16 50 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 Total: -1.00 -77.51 391.84 -0.65 -78.15 By element: Atomic # 1 Polarization: 38.72 SS G_CDS: 0.21 Total: 38.93 kcal Atomic # 6 Polarization: 16.52 SS G_CDS: 7.03 Total: 23.55 kcal Atomic # 7 Polarization: -111.11 SS G_CDS: -9.63 Total: -120.74 kcal Atomic # 8 Polarization: -65.48 SS G_CDS: -0.29 Total: -65.77 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.87 kcal Total: -77.51 -0.65 -78.15 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496228087.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.448 kcal (2) G-P(sol) polarization free energy of solvation -77.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds