Wall clock time and date at job start Tue Mar 31 2020 22:46:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.46873 * 2 1 4 4 C 1.52996 * 109.47267 * 239.99892 * 2 1 3 5 5 O 1.45197 * 109.47461 * 119.99763 * 2 1 3 6 6 C 1.34635 * 116.99809 * 59.99802 * 5 2 1 7 7 O 1.21518 * 119.99966 * 0.02562 * 6 5 2 8 8 N 1.34780 * 120.00223 * 180.02562 * 6 5 2 9 9 C 1.47583 * 134.49372 * 180.02562 * 8 6 5 10 10 C 1.53948 * 86.11575 * 155.35937 * 9 8 6 11 11 N 1.46901 * 113.74104 * 137.95278 * 10 9 8 12 12 C 1.46904 * 110.99654 * 181.92244 * 11 10 9 13 13 C 1.53234 * 109.33586 * 187.25446 * 12 11 10 14 14 N 1.47084 * 108.52265 * 306.16629 * 13 12 11 15 15 C 1.34774 * 120.88423 * 231.18914 * 14 13 12 16 16 O 1.21683 * 120.00152 * 184.75727 * 15 14 13 17 17 C 1.46381 * 119.99639 * 4.48248 * 15 14 13 18 18 H 1.07995 * 119.99857 * 352.37174 * 17 15 14 19 19 C 1.40047 * 119.99552 * 172.37779 * 17 15 14 20 20 N 1.30671 * 120.00398 * 359.97438 * 19 17 15 21 21 Si 1.86801 * 119.99836 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.47299 * 89.99753 * 21 19 17 23 23 H 1.48502 * 109.47021 * 209.99482 * 21 19 17 24 24 H 1.48498 * 109.47111 * 329.99374 * 21 19 17 25 25 C 1.47076 * 118.23245 * 51.46383 * 14 13 12 26 26 C 1.46899 * 110.99818 * 306.22276 * 11 10 9 27 27 C 1.47814 * 134.45266 * 359.87165 * 8 6 5 28 28 H 1.09000 * 109.47017 * 300.00174 * 1 2 3 29 29 H 1.09001 * 109.47409 * 59.99950 * 1 2 3 30 30 H 1.08999 * 109.46853 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.46835 * 180.02562 * 3 2 1 32 32 H 1.08998 * 109.47321 * 299.99456 * 3 2 1 33 33 H 1.09000 * 109.47441 * 60.00086 * 3 2 1 34 34 H 1.08995 * 109.47027 * 300.00395 * 4 2 1 35 35 H 1.09004 * 109.47258 * 59.99862 * 4 2 1 36 36 H 1.08998 * 109.47653 * 179.97438 * 4 2 1 37 37 H 1.08997 * 113.77041 * 41.05374 * 9 8 6 38 38 H 1.08999 * 113.76416 * 269.65619 * 9 8 6 39 39 H 1.09001 * 113.73592 * 269.15392 * 10 9 8 40 40 H 1.08998 * 109.49167 * 67.29568 * 12 11 10 41 41 H 1.08996 * 109.48967 * 307.21309 * 12 11 10 42 42 H 1.08999 * 109.62617 * 186.46285 * 13 12 11 43 43 H 1.08997 * 109.63436 * 65.88083 * 13 12 11 44 44 H 0.97002 * 120.00317 * 180.02562 * 20 19 17 45 45 H 1.08996 * 109.63463 * 68.25078 * 25 14 13 46 46 H 1.09007 * 109.62896 * 188.83227 * 25 14 13 47 47 H 1.09000 * 109.49186 * 292.70954 * 26 11 10 48 48 H 1.08993 * 109.49559 * 52.79167 * 26 11 10 49 49 H 1.08992 * 113.77200 * 90.38147 * 27 8 6 50 50 H 1.09000 * 113.83234 * 318.91118 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 8 2.0141 -0.6844 1.1855 6 6 1.6523 -1.9722 1.3384 7 8 0.9516 -2.5096 0.5036 8 7 2.0673 -2.6653 2.4172 9 6 1.8724 -4.0476 2.8963 10 6 3.1931 -3.8564 3.6639 11 7 3.1685 -4.4011 5.0280 12 6 4.4393 -4.1464 5.7194 13 6 4.4420 -4.8822 7.0636 14 7 3.2375 -4.4919 7.8122 15 6 3.3247 -4.0563 9.0846 16 8 2.3127 -3.8201 9.7176 17 6 4.6368 -3.8732 9.7071 18 1 5.5285 -4.2019 9.1942 19 6 4.7358 -3.2717 10.9680 20 7 3.6569 -2.8735 11.5885 21 14 6.4102 -3.0372 11.7622 22 1 6.9665 -1.7190 11.3645 23 1 6.2690 -3.0895 13.2395 24 1 7.3262 -4.1167 11.3139 25 6 1.9349 -4.5955 7.1373 26 6 2.0314 -3.8655 5.7883 27 6 2.9030 -2.3463 3.5940 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9564 -0.8900 33 1 1.6766 1.9564 0.8900 34 1 1.6767 -1.7488 -1.2492 35 1 1.6767 -0.2075 -2.1392 36 1 3.1300 -0.7209 -1.2495 37 1 1.9272 -4.7978 2.1075 38 1 1.0028 -4.1701 3.5420 39 1 4.0757 -4.1600 3.1009 40 1 4.5521 -3.0758 5.8905 41 1 5.2655 -4.5062 5.1062 42 1 5.3309 -4.6058 7.6305 43 1 4.4337 -5.9585 6.8919 44 1 3.7254 -2.4566 12.4616 45 1 1.6902 -5.6448 6.9726 46 1 1.1654 -4.1296 7.7530 47 1 2.1777 -2.7988 5.9583 48 1 1.1114 -4.0215 5.2251 49 1 2.3370 -1.9679 4.4451 50 1 3.7790 -1.7411 3.3610 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000496412290.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:05 Heat of formation + Delta-G solvation = -78.964201 kcal Electronic energy + Delta-G solvation = -30482.430011 eV Core-core repulsion = 26317.929175 eV Total energy + Delta-G solvation = -4164.500836 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.10225 -41.07793 -39.72672 -38.03109 -37.24355 -35.13820 -34.71806 -34.31119 -32.11479 -30.29649 -28.49479 -28.39546 -28.33368 -27.42041 -27.01909 -24.66608 -23.57069 -22.57543 -21.45155 -20.59576 -19.80950 -18.95653 -18.54406 -17.92838 -17.76430 -17.47194 -16.70254 -16.48700 -16.16155 -16.01590 -15.88042 -15.65261 -15.41955 -15.22652 -14.74827 -14.40313 -14.17987 -14.12757 -13.92941 -13.55764 -13.37524 -13.33057 -13.23729 -13.08541 -12.93552 -12.90213 -12.84058 -12.71410 -12.63703 -12.44919 -12.31061 -12.14063 -12.07864 -11.91913 -11.86747 -11.70202 -11.43328 -11.14023 -10.91243 -9.94442 -9.75219 -9.44829 -8.96086 -8.27184 -6.80570 0.89740 1.41953 1.43422 1.58464 1.68136 2.25251 2.48106 2.58991 2.75394 2.98390 3.38175 3.63833 3.70485 3.75546 3.76838 3.91488 3.94223 3.99613 4.12949 4.21799 4.32565 4.36836 4.48536 4.51896 4.53966 4.56850 4.58699 4.60212 4.72999 4.75414 4.79208 4.84146 4.84592 4.86352 4.93138 4.99787 5.07792 5.08913 5.24580 5.26356 5.29546 5.41966 5.43513 5.76732 5.95954 6.01489 6.18111 6.44546 6.51202 6.90995 7.17601 7.46471 8.49694 8.69922 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.018867 B = 0.002263 C = 0.002183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.726982 B =12368.189335 C =12824.221552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.122 3.878 3 C -0.136 4.136 4 C -0.177 4.177 5 O -0.371 6.371 6 C 0.668 3.332 7 O -0.593 6.593 8 N -0.634 5.634 9 C 0.134 3.866 10 C 0.071 3.929 11 N -0.516 5.516 12 C 0.051 3.949 13 C 0.121 3.879 14 N -0.648 5.648 15 C 0.542 3.458 16 O -0.636 6.636 17 C -0.567 4.567 18 H 0.097 0.903 19 C 0.028 3.972 20 N -0.826 5.826 21 Si 0.994 3.006 22 H -0.261 1.261 23 H -0.278 1.278 24 H -0.245 1.245 25 C 0.124 3.876 26 C 0.050 3.950 27 C 0.068 3.932 28 H 0.056 0.944 29 H 0.094 0.906 30 H 0.060 0.940 31 H 0.069 0.931 32 H 0.105 0.895 33 H 0.064 0.936 34 H 0.061 0.939 35 H 0.093 0.907 36 H 0.062 0.938 37 H 0.101 0.899 38 H 0.095 0.905 39 H 0.144 0.856 40 H 0.030 0.970 41 H 0.118 0.882 42 H 0.088 0.912 43 H 0.064 0.936 44 H 0.273 0.727 45 H 0.062 0.938 46 H 0.051 0.949 47 H 0.029 0.971 48 H 0.101 0.899 49 H 0.082 0.918 50 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.748 4.002 -24.443 24.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.085 3.915 3 C -0.193 4.193 4 C -0.234 4.234 5 O -0.286 6.286 6 C 0.425 3.575 7 O -0.484 6.484 8 N -0.376 5.376 9 C 0.013 3.987 10 C -0.038 4.038 11 N -0.240 5.240 12 C -0.077 4.077 13 C -0.002 4.002 14 N -0.385 5.385 15 C 0.348 3.652 16 O -0.523 6.523 17 C -0.603 4.603 18 H 0.115 0.885 19 C -0.187 4.187 20 N -0.456 5.456 21 Si 0.813 3.187 22 H -0.186 1.186 23 H -0.203 1.203 24 H -0.168 1.168 25 C 0.000 4.000 26 C -0.079 4.079 27 C -0.056 4.056 28 H 0.075 0.925 29 H 0.113 0.887 30 H 0.079 0.921 31 H 0.088 0.912 32 H 0.124 0.876 33 H 0.083 0.917 34 H 0.080 0.920 35 H 0.111 0.889 36 H 0.081 0.919 37 H 0.119 0.881 38 H 0.113 0.887 39 H 0.162 0.838 40 H 0.049 0.951 41 H 0.136 0.864 42 H 0.106 0.894 43 H 0.083 0.917 44 H 0.082 0.918 45 H 0.080 0.920 46 H 0.070 0.930 47 H 0.047 0.953 48 H 0.119 0.881 49 H 0.100 0.900 50 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 1.771 3.706 -24.474 24.816 hybrid contribution 0.018 1.075 0.855 1.374 sum 1.789 4.781 -23.619 24.164 Atomic orbital electron populations 1.22469 0.94091 1.03556 1.03515 1.22468 0.94574 0.92767 0.81646 1.21887 1.02441 0.90705 1.04236 1.22451 1.01643 1.02142 0.97145 1.86335 1.71751 1.22960 1.47545 1.17679 0.77840 0.80482 0.81512 1.90880 1.42357 1.71035 1.44159 1.48694 1.53777 1.15038 1.20111 1.23504 0.98259 0.80525 0.96377 1.23799 0.99485 0.90546 0.90007 1.61912 1.03264 1.57520 1.01281 1.22498 0.91811 0.98488 0.94884 1.21734 0.88532 0.98667 0.91306 1.48147 1.06842 1.70108 1.13371 1.18676 0.90552 0.76075 0.79932 1.90540 1.39891 1.58135 1.63773 1.21491 0.92606 1.42485 1.03701 0.88516 1.26991 1.02185 0.92371 0.97119 1.70191 1.32141 1.30071 1.13192 0.85071 0.76556 0.79999 0.77033 1.18555 1.20326 1.16833 1.21380 0.87004 0.99703 0.91956 1.22592 0.95287 0.96195 0.93820 1.24179 0.94523 1.00537 0.86362 0.92496 0.88718 0.92059 0.91197 0.87625 0.91717 0.91966 0.88856 0.91894 0.88097 0.88726 0.83800 0.95115 0.86424 0.89382 0.91731 0.91755 0.91952 0.93010 0.95291 0.88132 0.89998 0.88755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.36 8.37 71.98 0.60 -2.75 16 2 C 0.12 2.28 1.13 -10.79 -0.01 2.27 16 3 C -0.14 -1.73 8.85 71.98 0.64 -1.09 16 4 C -0.18 -3.07 8.37 71.98 0.60 -2.46 16 5 O -0.37 -9.12 9.87 -55.45 -0.55 -9.66 16 6 C 0.67 17.90 8.22 129.79 1.07 18.96 16 7 O -0.59 -18.09 12.61 19.78 0.25 -17.84 16 8 N -0.63 -14.42 3.61 -966.91 -3.49 -17.91 16 9 C 0.13 2.50 8.30 86.49 0.72 3.22 16 10 C 0.07 1.24 4.05 46.67 0.19 1.43 16 11 N -0.52 -11.69 4.77 -875.08 -4.17 -15.86 16 12 C 0.05 1.24 5.55 86.38 0.48 1.72 16 13 C 0.12 3.97 6.51 86.35 0.56 4.53 16 14 N -0.65 -28.37 3.00 -822.14 -2.47 -30.84 16 15 C 0.54 30.88 7.62 86.36 0.66 31.54 16 16 O -0.64 -42.52 14.54 -4.29 -0.06 -42.59 16 17 C -0.57 -30.95 8.86 24.83 0.22 -30.73 16 18 H 0.10 4.63 5.71 -2.91 -0.02 4.61 16 19 C 0.03 1.53 5.50 85.30 0.47 2.00 16 20 N -0.83 -50.25 11.86 21.84 0.26 -49.99 16 21 Si 0.99 39.80 29.56 68.60 2.03 41.83 16 22 H -0.26 -9.90 7.11 99.48 0.71 -9.19 16 23 H -0.28 -10.98 7.11 99.48 0.71 -10.27 16 24 H -0.25 -8.98 7.11 99.48 0.71 -8.28 16 25 C 0.12 4.66 6.61 86.51 0.57 5.23 16 26 C 0.05 1.38 4.65 86.54 0.40 1.78 16 27 C 0.07 1.36 8.18 86.44 0.71 2.07 16 28 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.06 1.49 5.88 -2.39 -0.01 1.48 16 31 H 0.07 0.86 8.14 -2.38 -0.02 0.84 16 32 H 0.11 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.06 1.43 5.88 -2.39 -0.01 1.42 16 35 H 0.09 1.14 8.14 -2.38 -0.02 1.12 16 36 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 38 H 0.09 1.77 5.93 -2.39 -0.01 1.76 16 39 H 0.14 1.92 8.11 -2.39 -0.02 1.90 16 40 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 41 H 0.12 1.99 8.08 -2.39 -0.02 1.97 16 42 H 0.09 3.04 5.38 -2.39 -0.01 3.02 16 43 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 44 H 0.27 15.08 8.29 -92.71 -0.77 14.31 16 45 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 46 H 0.05 2.30 7.09 -2.38 -0.02 2.28 16 47 H 0.03 0.90 6.38 -2.39 -0.02 0.88 16 48 H 0.10 2.33 5.81 -2.39 -0.01 2.31 16 49 H 0.08 1.87 5.76 -2.39 -0.01 1.86 16 50 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 Total: -1.00 -80.50 387.94 0.61 -79.89 By element: Atomic # 1 Polarization: 24.31 SS G_CDS: 0.95 Total: 25.26 kcal Atomic # 6 Polarization: 29.85 SS G_CDS: 7.87 Total: 37.72 kcal Atomic # 7 Polarization: -104.73 SS G_CDS: -9.88 Total: -114.60 kcal Atomic # 8 Polarization: -69.73 SS G_CDS: -0.36 Total: -70.09 kcal Atomic # 14 Polarization: 39.80 SS G_CDS: 2.03 Total: 41.83 kcal Total: -80.50 0.61 -79.89 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496412290.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.923 kcal (2) G-P(sol) polarization free energy of solvation -80.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds