Wall clock time and date at job start Tue Mar 31 2020 22:37:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47205 * 2 1 4 4 C 1.50703 * 109.46904 * 239.99916 * 2 1 3 5 5 H 1.08007 * 119.99819 * 240.00049 * 4 2 1 6 6 C 1.37873 * 120.00418 * 60.00336 * 4 2 1 7 7 N 1.31519 * 119.99335 * 359.97438 * 6 4 2 8 8 Si 1.86790 * 120.00319 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.47205 * 359.97438 * 8 6 4 10 10 H 1.48503 * 109.47450 * 119.99929 * 8 6 4 11 11 H 1.48501 * 109.47036 * 239.99773 * 8 6 4 12 12 C 1.52998 * 109.46757 * 120.00063 * 2 1 3 13 13 N 1.46496 * 109.47185 * 299.99608 * 12 2 1 14 14 C 1.34778 * 119.99967 * 180.02562 * 13 12 2 15 15 O 1.21585 * 119.99945 * 359.97438 * 14 13 12 16 16 N 1.34774 * 120.00134 * 180.02562 * 14 13 12 17 17 C 1.47031 * 125.64691 * 0.02562 * 16 14 13 18 18 C 1.54327 * 107.26879 * 181.01415 * 17 16 14 19 19 C 1.55156 * 102.94181 * 22.19441 * 18 17 16 20 20 H 1.08997 * 111.00714 * 82.61349 * 19 18 17 21 21 C 1.53004 * 111.00144 * 206.42086 * 19 18 17 22 22 N 1.46492 * 109.47353 * 185.00062 * 21 19 18 23 23 C 1.47092 * 125.56269 * 89.99788 * 22 21 19 24 24 C 1.54091 * 103.77993 * 179.97438 * 23 22 21 25 25 O 1.45699 * 104.00677 * 0.02562 * 24 23 22 26 26 C 1.33772 * 109.47841 * 359.75578 * 25 24 23 27 27 O 1.21506 * 123.07127 * 180.24349 * 26 25 24 28 28 C 1.47422 * 125.65171 * 179.97438 * 16 14 13 29 29 H 1.09005 * 109.47108 * 300.00255 * 1 2 3 30 30 H 1.09005 * 109.47007 * 59.99947 * 1 2 3 31 31 H 1.08993 * 109.47394 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.46531 * 180.02562 * 3 2 1 33 33 H 1.08997 * 109.47030 * 299.99650 * 3 2 1 34 34 H 1.08992 * 109.47122 * 60.00172 * 3 2 1 35 35 H 0.97008 * 119.99625 * 180.02562 * 7 6 4 36 36 H 1.09006 * 109.47079 * 179.97438 * 12 2 1 37 37 H 1.08998 * 109.47325 * 60.00272 * 12 2 1 38 38 H 0.97000 * 120.00179 * 0.02562 * 13 12 2 39 39 H 1.08998 * 109.88059 * 61.59780 * 17 16 14 40 40 H 1.08994 * 109.87878 * 300.43060 * 17 16 14 41 41 H 1.09001 * 110.71763 * 140.55775 * 18 17 16 42 42 H 1.08997 * 110.72099 * 263.64813 * 18 17 16 43 43 H 1.09000 * 109.47186 * 305.00391 * 21 19 18 44 44 H 1.09005 * 109.47115 * 64.99783 * 21 19 18 45 45 H 1.09005 * 110.56306 * 298.55538 * 23 22 21 46 46 H 1.08999 * 110.56224 * 61.25712 * 23 22 21 47 47 H 1.09003 * 110.51823 * 118.63385 * 24 23 22 48 48 H 1.09002 * 110.51499 * 241.23209 * 24 23 22 49 49 H 1.09000 * 110.36378 * 37.07938 * 28 16 14 50 50 H 1.09001 * 110.46274 * 274.80114 * 28 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5886 -1.1314 6 6 1.6993 -0.2395 -2.4828 7 7 0.9428 0.8296 -2.6034 8 14 2.3225 -1.1196 -4.0079 9 1 3.1483 -2.2857 -3.6037 10 1 1.1678 -1.5867 -4.8165 11 1 3.1472 -0.1858 -4.8160 12 6 2.0399 -0.7213 1.2492 13 7 1.5516 -0.0306 2.4454 14 6 1.8776 -0.4908 3.6695 15 8 2.5765 -1.4794 3.7810 16 7 1.4280 0.1442 4.7699 17 6 0.5779 1.3438 4.7798 18 6 0.3403 1.7249 6.2563 19 6 1.5335 1.0522 6.9850 20 1 2.4274 1.6733 6.9267 21 6 1.1810 0.7391 8.4406 22 7 2.3644 0.2166 9.1281 23 6 3.3642 1.0240 9.8437 24 6 4.3721 -0.0181 10.3657 25 8 3.8406 -1.2900 9.8940 26 6 2.7100 -1.0755 9.2119 27 8 2.0577 -1.9701 8.7115 28 6 1.7062 -0.2494 6.1631 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 3.1300 1.4424 -0.0005 33 1 1.6768 1.9563 -0.8900 34 1 1.6768 1.9563 0.8899 35 1 0.7082 1.1608 -3.4844 36 1 3.1300 -0.7217 1.2491 37 1 1.6766 -1.7489 1.2492 38 1 0.9937 0.7579 2.3564 39 1 -0.3741 1.1275 4.2950 40 1 1.0825 2.1599 4.2628 41 1 0.3703 2.8069 6.3849 42 1 -0.6084 1.3220 6.6107 43 1 0.8448 1.6494 8.9370 44 1 0.3855 -0.0056 8.4697 45 1 3.8522 1.7210 9.1624 46 1 2.9013 1.5605 10.6719 47 1 5.3610 0.1623 9.9442 48 1 4.4125 0.0017 11.4548 49 1 2.7257 -0.6237 6.2551 50 1 0.9940 -1.0049 6.4951 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000496807440.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:05 Heat of formation + Delta-G solvation = -93.580849 kcal Electronic energy + Delta-G solvation = -30410.713066 eV Core-core repulsion = 26245.578405 eV Total energy + Delta-G solvation = -4165.134661 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.87648 -39.99452 -38.07910 -37.35100 -36.28607 -35.70511 -33.26768 -32.29592 -30.71214 -30.22207 -29.16707 -26.78162 -25.68987 -25.43940 -24.68476 -24.11984 -23.00408 -21.58653 -20.61073 -19.64307 -18.75458 -18.01106 -17.73047 -17.51562 -17.20327 -16.13088 -15.83410 -15.36799 -15.18505 -14.83543 -14.63809 -14.48280 -14.44629 -14.17644 -13.75674 -13.56225 -13.28620 -13.08643 -12.88355 -12.81806 -12.56900 -12.46621 -12.14697 -12.11417 -11.71941 -11.34566 -11.21367 -11.16434 -11.03352 -11.00995 -10.84666 -10.79905 -10.62481 -10.34713 -10.17282 -9.69752 -9.59281 -9.35409 -9.25976 -8.74427 -8.58758 -8.37071 -8.05528 -5.99144 -4.08518 2.04807 2.46806 2.98266 3.09681 3.29675 3.38102 3.43893 3.68717 3.68862 4.07381 4.14312 4.26866 4.33270 4.42136 4.53975 4.64757 4.72632 4.81200 4.91160 4.98730 5.04393 5.17127 5.27751 5.27788 5.41475 5.51802 5.56378 5.80646 5.83534 5.96338 6.08801 6.21640 6.42016 6.44772 6.55507 6.85471 6.86337 6.97795 6.99869 7.07313 7.16656 7.39101 7.48874 7.59431 7.73358 7.74412 8.04606 8.16173 8.42113 8.51250 8.91699 9.12221 9.57018 11.02410 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.024560 B = 0.002163 C = 0.002076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.780036 B =12939.522743 C =13481.404993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.056 3.944 3 C -0.129 4.129 4 C -0.502 4.502 5 H 0.058 0.942 6 C 0.065 3.935 7 N -0.887 5.887 8 Si 0.893 3.107 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.285 1.285 12 C 0.150 3.850 13 N -0.731 5.731 14 C 0.715 3.285 15 O -0.594 6.594 16 N -0.644 5.644 17 C 0.100 3.900 18 C -0.119 4.119 19 C -0.125 4.125 20 H 0.088 0.912 21 C 0.159 3.841 22 N -0.633 5.633 23 C 0.065 3.935 24 C 0.040 3.960 25 O -0.328 6.328 26 C 0.640 3.360 27 O -0.509 6.509 28 C 0.139 3.861 29 H 0.005 0.995 30 H 0.085 0.915 31 H 0.027 0.973 32 H 0.026 0.974 33 H 0.085 0.915 34 H 0.004 0.996 35 H 0.259 0.741 36 H 0.051 0.949 37 H 0.052 0.948 38 H 0.393 0.607 39 H 0.067 0.933 40 H 0.066 0.934 41 H 0.084 0.916 42 H 0.081 0.919 43 H 0.091 0.909 44 H 0.094 0.906 45 H 0.092 0.908 46 H 0.092 0.908 47 H 0.106 0.894 48 H 0.105 0.895 49 H 0.070 0.930 50 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.385 9.698 27.573 29.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.055 3.945 3 C -0.187 4.187 4 C -0.541 4.541 5 H 0.077 0.923 6 C -0.136 4.136 7 N -0.526 5.526 8 Si 0.721 3.279 9 H -0.197 1.197 10 H -0.211 1.211 11 H -0.211 1.211 12 C 0.027 3.973 13 N -0.385 5.385 14 C 0.416 3.584 15 O -0.473 6.473 16 N -0.384 5.384 17 C -0.024 4.024 18 C -0.158 4.158 19 C -0.146 4.146 20 H 0.106 0.894 21 C 0.038 3.962 22 N -0.381 5.381 23 C -0.058 4.058 24 C -0.035 4.035 25 O -0.238 6.238 26 C 0.394 3.606 27 O -0.393 6.393 28 C 0.015 3.985 29 H 0.024 0.976 30 H 0.104 0.896 31 H 0.046 0.954 32 H 0.045 0.955 33 H 0.104 0.896 34 H 0.023 0.977 35 H 0.069 0.931 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.228 0.772 39 H 0.086 0.914 40 H 0.084 0.916 41 H 0.103 0.897 42 H 0.099 0.901 43 H 0.110 0.890 44 H 0.112 0.888 45 H 0.110 0.890 46 H 0.110 0.890 47 H 0.124 0.876 48 H 0.123 0.877 49 H 0.088 0.912 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 0.634 8.308 27.163 28.413 hybrid contribution 0.147 0.261 -0.892 0.941 sum 0.781 8.569 26.272 27.645 Atomic orbital electron populations 1.21813 0.97777 0.99188 0.99913 1.18370 0.92812 0.92763 0.90568 1.21810 0.98554 0.98387 0.99906 1.21035 1.31228 1.12011 0.89833 0.92343 1.24883 0.94918 0.94961 0.98852 1.69824 1.36852 1.22869 1.23033 0.86509 0.78625 0.79760 0.82958 1.19740 1.21085 1.21108 1.21590 0.97861 0.95479 0.82382 1.45500 1.55595 1.33042 1.04365 1.15607 0.80342 0.82513 0.79906 1.90901 1.43283 1.27522 1.85546 1.47578 1.54992 1.30587 1.05250 1.21936 0.95069 0.88144 0.97218 1.22587 0.98138 1.01078 0.93953 1.22894 0.99678 0.97823 0.94194 0.89358 1.21298 0.84800 1.00064 0.89997 1.48064 1.27217 1.06131 1.56708 1.22802 0.90030 0.95154 0.97840 1.24272 0.98311 0.79343 1.01537 1.87318 1.37764 1.31717 1.67050 1.18542 0.80214 0.83627 0.78227 1.91099 1.52928 1.45921 1.49311 1.21967 1.02106 0.95109 0.79289 0.97642 0.89638 0.95427 0.95477 0.89635 0.97663 0.93130 0.93012 0.92956 0.77225 0.91431 0.91601 0.89710 0.90063 0.89030 0.88807 0.88994 0.88991 0.87585 0.87654 0.91174 0.91198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.00 8.08 37.16 0.30 -2.70 16 2 C 0.06 1.33 0.50 -155.66 -0.08 1.25 16 3 C -0.13 -2.97 8.08 37.16 0.30 -2.67 16 4 C -0.50 -13.48 8.01 -34.44 -0.28 -13.76 16 5 H 0.06 1.60 7.74 -52.48 -0.41 1.19 16 6 C 0.06 1.73 5.15 -17.82 -0.09 1.64 16 7 N -0.89 -23.90 9.35 55.43 0.52 -23.38 16 8 Si 0.89 21.09 29.54 -169.99 -5.02 16.07 16 9 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 11 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 12 C 0.15 3.41 4.50 -4.04 -0.02 3.39 16 13 N -0.73 -14.34 4.92 -65.23 -0.32 -14.66 16 14 C 0.71 14.40 8.49 -86.92 -0.74 13.66 16 15 O -0.59 -14.54 16.60 5.29 0.09 -14.45 16 16 N -0.64 -9.90 3.33 -176.24 -0.59 -10.49 16 17 C 0.10 1.07 6.15 -3.06 -0.02 1.05 16 18 C -0.12 -0.81 6.42 -24.90 -0.16 -0.97 16 19 C -0.13 -1.01 3.26 -88.47 -0.29 -1.30 16 20 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 21 C 0.16 0.99 5.49 -4.04 -0.02 0.97 16 22 N -0.63 -4.73 2.93 -178.84 -0.52 -5.25 16 23 C 0.07 0.21 7.69 -3.15 -0.02 0.19 16 24 C 0.04 0.16 8.23 37.73 0.31 0.47 16 25 O -0.33 -3.38 11.09 -37.83 -0.42 -3.80 16 26 C 0.64 7.59 8.53 53.71 0.46 8.05 16 27 O -0.51 -8.32 16.70 -19.11 -0.32 -8.64 16 28 C 0.14 1.90 5.46 -2.53 -0.01 1.89 16 29 H 0.00 0.10 6.86 -51.93 -0.36 -0.26 16 30 H 0.08 2.17 6.07 -51.93 -0.32 1.85 16 31 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.08 2.16 6.07 -51.93 -0.32 1.84 16 34 H 0.00 0.09 6.86 -51.93 -0.36 -0.27 16 35 H 0.26 6.70 8.31 -40.82 -0.34 6.36 16 36 H 0.05 1.24 8.14 -51.93 -0.42 0.81 16 37 H 0.05 1.26 8.14 -51.93 -0.42 0.84 16 38 H 0.39 6.93 5.15 -40.82 -0.21 6.72 16 39 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 40 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 42 H 0.08 0.47 8.04 -51.93 -0.42 0.06 16 43 H 0.09 0.27 8.14 -51.93 -0.42 -0.16 16 44 H 0.09 0.70 7.74 -51.93 -0.40 0.29 16 45 H 0.09 0.19 8.14 -51.93 -0.42 -0.24 16 46 H 0.09 0.08 8.14 -51.93 -0.42 -0.34 16 47 H 0.11 0.26 8.14 -51.93 -0.42 -0.17 16 48 H 0.11 0.15 8.14 -51.93 -0.42 -0.27 16 49 H 0.07 1.16 8.04 -51.93 -0.42 0.74 16 50 H 0.07 1.05 7.63 -51.93 -0.40 0.65 16 LS Contribution 394.18 15.07 5.94 5.94 Total: -1.00 -36.09 394.18 -9.23 -45.32 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: -8.22 Total: 2.17 kcal Atomic # 6 Polarization: 11.53 SS G_CDS: -0.36 Total: 11.17 kcal Atomic # 7 Polarization: -52.86 SS G_CDS: -0.91 Total: -53.78 kcal Atomic # 8 Polarization: -26.25 SS G_CDS: -0.65 Total: -26.90 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -36.09 -9.23 -45.32 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496807440.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.263 kcal (2) G-P(sol) polarization free energy of solvation -36.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds