Wall clock time and date at job start Tue Mar 31 2020 22:58:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50702 * 120.00030 * 2 1 4 4 N 1.46898 * 109.47225 * 124.20986 * 3 2 1 5 5 C 1.46908 * 110.99794 * 302.09696 * 4 3 2 6 6 C 1.50697 * 109.47073 * 288.76525 * 5 4 3 7 7 H 1.07993 * 120.00415 * 358.64334 * 6 5 4 8 8 C 1.37879 * 119.99633 * 178.64098 * 6 5 4 9 9 N 1.31516 * 120.00107 * 0.02562 * 8 6 5 10 10 Si 1.86796 * 120.00040 * 180.02562 * 8 6 5 11 11 H 1.48508 * 109.46926 * 359.97438 * 10 8 6 12 12 H 1.48498 * 109.47688 * 120.00019 * 10 8 6 13 13 H 1.48507 * 109.47097 * 240.00474 * 10 8 6 14 14 C 1.46897 * 111.00624 * 66.05485 * 4 3 2 15 15 N 1.46494 * 109.47397 * 81.04393 * 14 4 3 16 16 C 1.47056 * 125.40999 * 90.00144 * 15 14 4 17 17 C 1.54097 * 103.99279 * 180.02562 * 16 15 14 18 18 N 1.47053 * 103.86502 * 359.92234 * 17 16 15 19 19 C 1.34774 * 125.41429 * 180.02562 * 18 17 16 20 20 O 1.21467 * 120.00207 * 0.02562 * 19 18 17 21 21 O 1.34591 * 120.00135 * 180.02562 * 19 18 17 22 22 C 1.45200 * 117.00415 * 179.97438 * 21 19 18 23 23 C 1.53001 * 109.46726 * 59.99836 * 22 21 19 24 24 C 1.53000 * 109.47632 * 179.97438 * 22 21 19 25 25 C 1.52999 * 109.47198 * 300.00081 * 22 21 19 26 26 C 1.33955 * 109.17814 * 0.02562 * 18 17 16 27 27 O 1.21538 * 123.04294 * 179.97438 * 26 18 17 28 28 H 1.08011 * 119.99831 * 0.02562 * 1 2 3 29 29 H 1.07996 * 120.00307 * 180.02562 * 1 2 3 30 30 H 1.08004 * 119.99723 * 179.97438 * 2 1 3 31 31 H 1.08999 * 109.47579 * 4.20185 * 3 2 1 32 32 H 1.09002 * 109.46478 * 244.20106 * 3 2 1 33 33 H 1.09003 * 109.46622 * 48.76683 * 5 4 3 34 34 H 1.09003 * 109.46822 * 168.76173 * 5 4 3 35 35 H 0.96999 * 120.00059 * 179.97438 * 9 8 6 36 36 H 1.09004 * 109.47022 * 321.04757 * 14 4 3 37 37 H 1.09000 * 109.47585 * 201.05092 * 14 4 3 38 38 H 1.09002 * 110.54818 * 61.40387 * 16 15 14 39 39 H 1.09003 * 110.54819 * 298.73606 * 16 15 14 40 40 H 1.08998 * 110.55586 * 118.52175 * 17 16 15 41 41 H 1.09004 * 110.54573 * 241.19340 * 17 16 15 42 42 H 1.09001 * 109.47432 * 60.00363 * 23 22 21 43 43 H 1.09006 * 109.47368 * 180.02562 * 23 22 21 44 44 H 1.09003 * 109.47622 * 300.00064 * 23 22 21 45 45 H 1.09002 * 109.46679 * 60.00102 * 24 22 21 46 46 H 1.08993 * 109.46976 * 180.02562 * 24 22 21 47 47 H 1.08997 * 109.46674 * 300.00214 * 24 22 21 48 48 H 1.09008 * 109.46935 * 59.99305 * 25 22 21 49 49 H 1.09001 * 109.47544 * 179.97438 * 25 22 21 50 50 H 1.08995 * 109.47486 * 299.99779 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9827 1.3399 1.1453 5 6 2.2547 1.1694 2.4099 6 6 1.4528 2.4121 2.6993 7 1 1.4982 3.2535 2.0240 8 6 0.6612 2.4747 3.8265 9 7 0.6063 1.4501 4.6492 10 14 -0.3334 4.0147 4.1849 11 1 -0.0986 5.0161 3.1137 12 1 -1.7773 3.6713 4.2343 13 1 0.0857 4.5815 5.4921 14 6 4.0377 0.3275 1.0047 15 7 5.0857 0.8345 0.1154 16 6 6.2692 1.5966 0.5409 17 6 7.0256 1.8743 -0.7726 18 7 6.1900 1.2378 -1.8018 19 6 6.4558 1.2206 -3.1229 20 8 7.4568 1.7616 -3.5481 21 8 5.6122 0.6040 -3.9712 22 6 5.9615 0.6256 -5.3804 23 6 7.3167 -0.0560 -5.5803 24 6 4.8929 -0.1200 -6.1823 25 6 6.0435 2.0750 -5.8633 26 6 5.1226 0.6778 -1.2175 27 8 4.2637 0.0823 -1.8380 28 1 -0.5400 0.9354 -0.0004 29 1 -0.5400 -0.9352 0.0004 30 1 1.8500 -0.9354 0.0004 31 1 1.3577 2.1323 0.0753 32 1 2.6325 1.3960 -0.9253 33 1 1.5836 0.3142 2.3303 34 1 2.9658 0.9993 3.2184 35 1 0.0496 1.4943 5.4424 36 1 3.6131 -0.5837 0.5832 37 1 4.4655 0.1100 1.9834 38 1 6.8839 1.0026 1.2173 39 1 5.9718 2.5310 1.0168 40 1 7.1016 2.9469 -0.9510 41 1 8.0164 1.4206 -0.7468 42 1 7.2583 -1.0887 -5.2362 43 1 7.5792 -0.0395 -6.6381 44 1 8.0783 0.4748 -5.0090 45 1 3.9274 0.3652 -6.0399 46 1 5.1555 -0.1041 -7.2400 47 1 4.8350 -1.1526 -5.8381 48 1 6.8051 2.6059 -5.2919 49 1 6.3062 2.0913 -6.9211 50 1 5.0782 2.5607 -5.7209 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000497314202.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:58:40 Heat of formation + Delta-G solvation = -48.987523 kcal Electronic energy + Delta-G solvation = -31324.280457 eV Core-core repulsion = 27161.079507 eV Total energy + Delta-G solvation = -4163.200950 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.91895 -40.29301 -37.64256 -37.05757 -36.25137 -34.55670 -33.71852 -32.80693 -31.72791 -29.44538 -27.59523 -27.57995 -27.31165 -26.35995 -24.62726 -23.94384 -22.11813 -21.42848 -20.89701 -19.43390 -18.79530 -18.15949 -17.39534 -16.90216 -16.36932 -16.00151 -15.81896 -15.37207 -14.98109 -14.77898 -14.73784 -14.44149 -14.28156 -14.04705 -13.71704 -13.64787 -13.59640 -12.73658 -12.65464 -12.59789 -12.29636 -12.27632 -12.18286 -12.10255 -12.07525 -11.64887 -11.62834 -11.48869 -11.20076 -11.00916 -10.72854 -10.66463 -10.54624 -10.52559 -10.43429 -10.08935 -9.99434 -9.72922 -9.35689 -8.70520 -8.62159 -8.42420 -7.38914 -6.04933 -4.05578 1.57945 2.09023 2.96958 3.03908 3.29120 3.31249 3.37157 3.41825 3.90327 4.23733 4.41276 4.50346 4.56796 4.69464 4.71571 4.77895 5.06021 5.17445 5.28227 5.31338 5.33119 5.40179 5.46208 5.52246 5.56611 5.60360 5.63754 5.63855 5.67231 5.76005 5.84014 5.93991 6.05031 6.08385 6.17715 6.23395 6.50677 6.60825 6.70550 6.74156 7.09048 7.21628 7.26186 7.34569 7.47228 7.76377 7.96884 8.00299 8.12364 8.37752 8.48882 9.01426 9.58380 11.05560 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.017401 B = 0.002858 C = 0.002695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1608.690318 B = 9796.039821 C =10385.995490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.168 4.168 3 C 0.093 3.907 4 N -0.546 5.546 5 C 0.195 3.805 6 C -0.501 4.501 7 H 0.062 0.938 8 C 0.057 3.943 9 N -0.898 5.898 10 Si 0.895 3.105 11 H -0.273 1.273 12 H -0.285 1.285 13 H -0.285 1.285 14 C 0.304 3.696 15 N -0.604 5.604 16 C 0.093 3.907 17 C 0.103 3.897 18 N -0.566 5.566 19 C 0.686 3.314 20 O -0.546 6.546 21 O -0.324 6.324 22 C 0.128 3.872 23 C -0.183 4.183 24 C -0.139 4.139 25 C -0.184 4.184 26 C 0.692 3.308 27 O -0.532 6.532 28 H 0.095 0.905 29 H 0.084 0.916 30 H 0.095 0.905 31 H 0.080 0.920 32 H 0.068 0.932 33 H 0.008 0.992 34 H 0.027 0.973 35 H 0.260 0.740 36 H 0.064 0.936 37 H 0.093 0.907 38 H 0.089 0.911 39 H 0.098 0.902 40 H 0.098 0.902 41 H 0.096 0.904 42 H 0.061 0.939 43 H 0.071 0.929 44 H 0.085 0.915 45 H 0.069 0.931 46 H 0.079 0.921 47 H 0.068 0.932 48 H 0.085 0.915 49 H 0.071 0.929 50 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.020 -2.538 -15.904 21.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.188 4.188 3 C -0.035 4.035 4 N -0.270 5.270 5 C 0.071 3.929 6 C -0.539 4.539 7 H 0.080 0.920 8 C -0.144 4.144 9 N -0.537 5.537 10 Si 0.723 3.277 11 H -0.197 1.197 12 H -0.211 1.211 13 H -0.211 1.211 14 C 0.093 3.907 15 N -0.343 5.343 16 C -0.031 4.031 17 C -0.019 4.019 18 N -0.319 5.319 19 C 0.442 3.558 20 O -0.433 6.433 21 O -0.237 6.237 22 C 0.092 3.908 23 C -0.240 4.240 24 C -0.196 4.196 25 C -0.241 4.241 26 C 0.393 3.607 27 O -0.404 6.404 28 H 0.114 0.886 29 H 0.103 0.897 30 H 0.113 0.887 31 H 0.098 0.902 32 H 0.086 0.914 33 H 0.026 0.974 34 H 0.045 0.955 35 H 0.070 0.930 36 H 0.081 0.919 37 H 0.111 0.889 38 H 0.107 0.893 39 H 0.116 0.884 40 H 0.116 0.884 41 H 0.114 0.886 42 H 0.080 0.920 43 H 0.090 0.910 44 H 0.104 0.896 45 H 0.088 0.912 46 H 0.098 0.902 47 H 0.087 0.913 48 H 0.104 0.896 49 H 0.090 0.910 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 13.889 -2.374 -16.303 21.548 hybrid contribution -0.869 0.123 0.433 0.979 sum 13.020 -2.251 -15.870 20.650 Atomic orbital electron populations 1.23640 0.95982 1.00987 1.01461 1.23397 0.96535 0.99551 0.99315 1.21237 0.94627 0.94377 0.93279 1.62095 1.13193 1.46813 1.04936 1.19766 0.92415 0.97402 0.83339 1.21104 1.25005 1.00388 1.07446 0.92003 1.24943 0.96926 0.96383 0.96190 1.69955 1.40267 1.30075 1.13448 0.86490 0.79807 0.83250 0.78161 1.19724 1.21139 1.21085 1.21819 0.85214 0.91733 0.91936 1.47716 1.24348 1.57055 1.05201 1.22493 0.86424 0.98726 0.95425 1.22631 0.95013 1.00065 0.84158 1.45059 1.26310 1.55356 1.05135 1.17429 0.81011 0.76877 0.80450 1.90909 1.28082 1.48384 1.75942 1.86644 1.48427 1.69828 1.18800 1.22227 0.96065 0.96837 0.75709 1.22521 0.96981 1.01192 1.03321 1.21826 0.98217 1.00992 0.98556 1.22522 1.03826 0.95319 1.02426 1.16088 0.81498 0.79995 0.83076 1.91010 1.38955 1.44682 1.65753 0.88641 0.89712 0.88655 0.90215 0.91368 0.97405 0.95539 0.93013 0.91870 0.88879 0.89315 0.88387 0.88409 0.88553 0.92005 0.90958 0.89645 0.91164 0.90195 0.91292 0.89631 0.90962 0.91859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.43 14.32 29.02 0.42 -3.02 16 2 C -0.17 -3.29 7.35 -36.02 -0.26 -3.55 16 3 C 0.09 1.88 5.59 -4.98 -0.03 1.85 16 4 N -0.55 -11.14 4.76 -241.43 -1.15 -12.29 16 5 C 0.20 4.74 4.55 -4.97 -0.02 4.72 16 6 C -0.50 -13.46 8.59 -34.44 -0.30 -13.76 16 7 H 0.06 1.69 7.50 -52.49 -0.39 1.29 16 8 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 9 N -0.90 -25.77 13.29 55.43 0.74 -25.03 16 10 Si 0.89 21.24 29.54 -169.99 -5.02 16.22 16 11 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 12 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 13 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 14 C 0.30 5.14 5.70 -63.32 -0.36 4.78 16 15 N -0.60 -8.98 3.17 -182.24 -0.58 -9.56 16 16 C 0.09 0.97 7.67 -3.17 -0.02 0.94 16 17 C 0.10 1.01 7.21 -3.17 -0.02 0.98 16 18 N -0.57 -7.98 3.00 -125.53 -0.38 -8.36 16 19 C 0.69 10.12 7.85 54.05 0.42 10.55 16 20 O -0.55 -7.93 12.19 -19.25 -0.23 -8.17 16 21 O -0.32 -4.88 8.30 -47.13 -0.39 -5.27 16 22 C 0.13 1.45 1.13 -90.62 -0.10 1.35 16 23 C -0.18 -1.82 8.37 37.16 0.31 -1.51 16 24 C -0.14 -1.29 8.85 37.16 0.33 -0.96 16 25 C -0.18 -1.90 8.37 37.16 0.31 -1.59 16 26 C 0.69 11.37 7.57 -88.11 -0.67 10.70 16 27 O -0.53 -10.39 14.45 -15.24 -0.22 -10.61 16 28 H 0.10 1.81 7.84 -52.48 -0.41 1.40 16 29 H 0.08 1.43 8.06 -52.49 -0.42 1.01 16 30 H 0.10 1.82 6.76 -52.48 -0.35 1.46 16 31 H 0.08 1.74 6.96 -51.93 -0.36 1.38 16 32 H 0.07 1.40 5.78 -51.93 -0.30 1.10 16 33 H 0.01 0.21 6.65 -51.93 -0.35 -0.13 16 34 H 0.03 0.67 7.66 -51.93 -0.40 0.27 16 35 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 36 H 0.06 1.12 5.91 -51.93 -0.31 0.81 16 37 H 0.09 1.44 7.56 -51.93 -0.39 1.05 16 38 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 42 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.08 0.98 5.88 -51.93 -0.31 0.68 16 45 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 46 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 48 H 0.08 1.02 5.88 -51.92 -0.31 0.72 16 49 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 50 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 398.91 15.07 6.01 6.01 Total: -1.00 -32.58 398.91 -9.40 -41.99 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: -8.08 Total: 2.11 kcal Atomic # 6 Polarization: 13.05 SS G_CDS: -0.10 Total: 12.95 kcal Atomic # 7 Polarization: -53.87 SS G_CDS: -1.37 Total: -55.23 kcal Atomic # 8 Polarization: -23.19 SS G_CDS: -0.85 Total: -24.04 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -32.58 -9.40 -41.99 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000497314202.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.002 kcal (2) G-P(sol) polarization free energy of solvation -32.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds