Wall clock time and date at job start Tue Mar 31 2020 22:58:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50702 * 120.00030 * 2 1 4 4 N 1.46898 * 109.47225 * 124.20986 * 3 2 1 5 5 C 1.46908 * 110.99794 * 302.09696 * 4 3 2 6 6 C 1.50697 * 109.47073 * 288.76525 * 5 4 3 7 7 H 1.07993 * 120.00415 * 358.64334 * 6 5 4 8 8 C 1.37879 * 119.99633 * 178.64098 * 6 5 4 9 9 N 1.31516 * 120.00107 * 0.02562 * 8 6 5 10 10 Si 1.86796 * 120.00040 * 180.02562 * 8 6 5 11 11 H 1.48508 * 109.46926 * 359.97438 * 10 8 6 12 12 H 1.48498 * 109.47688 * 120.00019 * 10 8 6 13 13 H 1.48507 * 109.47097 * 240.00474 * 10 8 6 14 14 C 1.46897 * 111.00624 * 66.05485 * 4 3 2 15 15 N 1.46494 * 109.47397 * 81.04393 * 14 4 3 16 16 C 1.47056 * 125.40999 * 90.00144 * 15 14 4 17 17 C 1.54097 * 103.99279 * 180.02562 * 16 15 14 18 18 N 1.47053 * 103.86502 * 359.92234 * 17 16 15 19 19 C 1.34774 * 125.41429 * 180.02562 * 18 17 16 20 20 O 1.21467 * 120.00207 * 0.02562 * 19 18 17 21 21 O 1.34591 * 120.00135 * 180.02562 * 19 18 17 22 22 C 1.45200 * 117.00415 * 179.97438 * 21 19 18 23 23 C 1.53001 * 109.46726 * 59.99836 * 22 21 19 24 24 C 1.53000 * 109.47632 * 179.97438 * 22 21 19 25 25 C 1.52999 * 109.47198 * 300.00081 * 22 21 19 26 26 C 1.33955 * 109.17814 * 0.02562 * 18 17 16 27 27 O 1.21538 * 123.04294 * 179.97438 * 26 18 17 28 28 H 1.08011 * 119.99831 * 0.02562 * 1 2 3 29 29 H 1.07996 * 120.00307 * 180.02562 * 1 2 3 30 30 H 1.08004 * 119.99723 * 179.97438 * 2 1 3 31 31 H 1.08999 * 109.47579 * 4.20185 * 3 2 1 32 32 H 1.09002 * 109.46478 * 244.20106 * 3 2 1 33 33 H 1.09003 * 109.46622 * 48.76683 * 5 4 3 34 34 H 1.09003 * 109.46822 * 168.76173 * 5 4 3 35 35 H 0.96999 * 120.00059 * 179.97438 * 9 8 6 36 36 H 1.09004 * 109.47022 * 321.04757 * 14 4 3 37 37 H 1.09000 * 109.47585 * 201.05092 * 14 4 3 38 38 H 1.09002 * 110.54818 * 61.40387 * 16 15 14 39 39 H 1.09003 * 110.54819 * 298.73606 * 16 15 14 40 40 H 1.08998 * 110.55586 * 118.52175 * 17 16 15 41 41 H 1.09004 * 110.54573 * 241.19340 * 17 16 15 42 42 H 1.09001 * 109.47432 * 60.00363 * 23 22 21 43 43 H 1.09006 * 109.47368 * 180.02562 * 23 22 21 44 44 H 1.09003 * 109.47622 * 300.00064 * 23 22 21 45 45 H 1.09002 * 109.46679 * 60.00102 * 24 22 21 46 46 H 1.08993 * 109.46976 * 180.02562 * 24 22 21 47 47 H 1.08997 * 109.46674 * 300.00214 * 24 22 21 48 48 H 1.09008 * 109.46935 * 59.99305 * 25 22 21 49 49 H 1.09001 * 109.47544 * 179.97438 * 25 22 21 50 50 H 1.08995 * 109.47486 * 299.99779 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9827 1.3399 1.1453 5 6 2.2547 1.1694 2.4099 6 6 1.4528 2.4121 2.6993 7 1 1.4982 3.2535 2.0240 8 6 0.6612 2.4747 3.8265 9 7 0.6063 1.4501 4.6492 10 14 -0.3334 4.0147 4.1849 11 1 -0.0986 5.0161 3.1137 12 1 -1.7773 3.6713 4.2343 13 1 0.0857 4.5815 5.4921 14 6 4.0377 0.3275 1.0047 15 7 5.0857 0.8345 0.1154 16 6 6.2692 1.5966 0.5409 17 6 7.0256 1.8743 -0.7726 18 7 6.1900 1.2378 -1.8018 19 6 6.4558 1.2206 -3.1229 20 8 7.4568 1.7616 -3.5481 21 8 5.6122 0.6040 -3.9712 22 6 5.9615 0.6256 -5.3804 23 6 7.3167 -0.0560 -5.5803 24 6 4.8929 -0.1200 -6.1823 25 6 6.0435 2.0750 -5.8633 26 6 5.1226 0.6778 -1.2175 27 8 4.2637 0.0823 -1.8380 28 1 -0.5400 0.9354 -0.0004 29 1 -0.5400 -0.9352 0.0004 30 1 1.8500 -0.9354 0.0004 31 1 1.3577 2.1323 0.0753 32 1 2.6325 1.3960 -0.9253 33 1 1.5836 0.3142 2.3303 34 1 2.9658 0.9993 3.2184 35 1 0.0496 1.4943 5.4424 36 1 3.6131 -0.5837 0.5832 37 1 4.4655 0.1100 1.9834 38 1 6.8839 1.0026 1.2173 39 1 5.9718 2.5310 1.0168 40 1 7.1016 2.9469 -0.9510 41 1 8.0164 1.4206 -0.7468 42 1 7.2583 -1.0887 -5.2362 43 1 7.5792 -0.0395 -6.6381 44 1 8.0783 0.4748 -5.0090 45 1 3.9274 0.3652 -6.0399 46 1 5.1555 -0.1041 -7.2400 47 1 4.8350 -1.1526 -5.8381 48 1 6.8051 2.6059 -5.2919 49 1 6.3062 2.0913 -6.9211 50 1 5.0782 2.5607 -5.7209 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000497314202.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:58:39 Heat of formation + Delta-G solvation = -68.673946 kcal Electronic energy + Delta-G solvation = -31325.134124 eV Core-core repulsion = 27161.079507 eV Total energy + Delta-G solvation = -4164.054617 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -43.02785 -41.37255 -39.07166 -38.31653 -37.42760 -35.68528 -34.85929 -34.71026 -33.32288 -30.56161 -29.11594 -28.38848 -28.33978 -27.82463 -26.01193 -25.30375 -23.41709 -22.69423 -22.29924 -20.64535 -20.19731 -19.27424 -18.47534 -18.38787 -17.87090 -17.24741 -17.08794 -16.85310 -16.33844 -16.03048 -15.95435 -15.83218 -15.44230 -15.25646 -15.22405 -14.81838 -14.53391 -14.30168 -14.02318 -13.59526 -13.45902 -13.32461 -13.14537 -13.03556 -12.94569 -12.91821 -12.87076 -12.70206 -12.57949 -12.55448 -12.51345 -12.32314 -12.21152 -11.98563 -11.53807 -11.46578 -11.37040 -11.26233 -10.84468 -10.56816 -10.18507 -9.88487 -9.07596 -8.14422 -6.21827 0.55444 0.92257 1.41415 1.43630 1.45235 1.55363 1.88669 2.13177 2.43919 2.90323 3.18916 3.37928 3.41142 3.68390 3.70056 3.75898 3.90673 4.04351 4.07341 4.21052 4.33247 4.37409 4.42568 4.53555 4.59951 4.60156 4.67427 4.71717 4.73797 4.81808 4.83930 4.88331 4.95080 5.04968 5.07434 5.21580 5.23572 5.24543 5.24797 5.28745 5.46193 5.64274 5.70810 5.72532 5.88419 5.99692 6.10640 6.32370 6.57280 6.90491 6.92591 7.15804 7.46486 8.95504 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.017401 B = 0.002858 C = 0.002695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1608.690318 B = 9796.039821 C =10385.995490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.180 4.180 3 C 0.103 3.897 4 N -0.548 5.548 5 C 0.213 3.787 6 C -0.511 4.511 7 H 0.053 0.947 8 C 0.010 3.990 9 N -0.929 5.929 10 Si 0.956 3.044 11 H -0.269 1.269 12 H -0.283 1.283 13 H -0.278 1.278 14 C 0.309 3.691 15 N -0.605 5.605 16 C 0.092 3.908 17 C 0.101 3.899 18 N -0.568 5.568 19 C 0.681 3.319 20 O -0.546 6.546 21 O -0.348 6.348 22 C 0.113 3.887 23 C -0.176 4.176 24 C -0.135 4.135 25 C -0.178 4.178 26 C 0.688 3.312 27 O -0.571 6.571 28 H 0.090 0.910 29 H 0.106 0.894 30 H 0.100 0.900 31 H 0.059 0.941 32 H 0.065 0.935 33 H -0.014 1.014 34 H 0.015 0.985 35 H 0.263 0.737 36 H 0.054 0.946 37 H 0.111 0.889 38 H 0.122 0.878 39 H 0.099 0.901 40 H 0.110 0.890 41 H 0.124 0.876 42 H 0.058 0.942 43 H 0.100 0.900 44 H 0.068 0.932 45 H 0.058 0.942 46 H 0.112 0.888 47 H 0.062 0.938 48 H 0.067 0.933 49 H 0.100 0.900 50 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.177 -2.019 -16.569 22.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.200 4.200 3 C -0.025 4.025 4 N -0.273 5.273 5 C 0.088 3.912 6 C -0.550 4.550 7 H 0.072 0.928 8 C -0.188 4.188 9 N -0.569 5.569 10 Si 0.782 3.218 11 H -0.193 1.193 12 H -0.209 1.209 13 H -0.204 1.204 14 C 0.098 3.902 15 N -0.343 5.343 16 C -0.030 4.030 17 C -0.018 4.018 18 N -0.320 5.320 19 C 0.437 3.563 20 O -0.434 6.434 21 O -0.262 6.262 22 C 0.077 3.923 23 C -0.233 4.233 24 C -0.192 4.192 25 C -0.235 4.235 26 C 0.390 3.610 27 O -0.446 6.446 28 H 0.109 0.891 29 H 0.124 0.876 30 H 0.118 0.882 31 H 0.078 0.922 32 H 0.083 0.917 33 H 0.003 0.997 34 H 0.033 0.967 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.129 0.871 38 H 0.140 0.860 39 H 0.118 0.882 40 H 0.129 0.871 41 H 0.142 0.858 42 H 0.077 0.923 43 H 0.118 0.882 44 H 0.087 0.913 45 H 0.077 0.923 46 H 0.130 0.870 47 H 0.081 0.919 48 H 0.086 0.914 49 H 0.119 0.881 50 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 15.105 -1.828 -16.976 22.797 hybrid contribution -1.181 -0.050 0.570 1.312 sum 13.925 -1.879 -16.406 21.601 Atomic orbital electron populations 1.23817 0.95854 1.01815 1.00280 1.23388 0.96902 0.99285 1.00380 1.21035 0.94265 0.94153 0.92997 1.62015 1.13355 1.48442 1.03455 1.19380 0.91686 0.95506 0.84663 1.21347 1.25393 1.00950 1.07289 0.92841 1.25682 0.97933 0.99134 0.96075 1.70052 1.41126 1.31832 1.13939 0.85526 0.78257 0.79868 0.78104 1.19328 1.20885 1.20397 1.21719 0.84824 0.90586 0.93050 1.47609 1.24911 1.57209 1.04615 1.22811 0.85030 0.98834 0.96307 1.22968 0.95508 1.00928 0.82423 1.45142 1.26215 1.55122 1.05568 1.17557 0.81080 0.76966 0.80659 1.90903 1.28057 1.48490 1.75960 1.86646 1.49119 1.69881 1.20554 1.22662 0.97436 0.97856 0.74321 1.22460 0.95560 1.00430 1.04819 1.21868 0.97180 1.00087 1.00080 1.22473 1.02744 0.94393 1.03871 1.16268 0.81606 0.79747 0.83406 1.90969 1.40572 1.46382 1.66690 0.89133 0.87566 0.88199 0.92246 0.91700 0.99661 0.96655 0.92849 0.92770 0.87146 0.86000 0.88237 0.87144 0.85796 0.92312 0.88179 0.91320 0.92260 0.86967 0.91918 0.91365 0.88108 0.92709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.77 14.32 67.78 0.97 -5.80 16 2 C -0.18 -7.14 7.35 25.65 0.19 -6.95 16 3 C 0.10 4.30 5.59 85.56 0.48 4.77 16 4 N -0.55 -22.55 4.76 -917.74 -4.37 -26.92 16 5 C 0.21 10.49 4.55 85.55 0.39 10.88 16 6 C -0.51 -27.68 8.59 25.60 0.22 -27.46 16 7 H 0.05 2.93 7.50 -2.91 -0.02 2.91 16 8 C 0.01 0.55 5.46 84.65 0.46 1.01 16 9 N -0.93 -53.47 13.29 21.45 0.28 -53.18 16 10 Si 0.96 43.44 29.54 68.60 2.03 45.47 16 11 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 12 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 13 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 14 C 0.31 10.40 5.70 170.81 0.97 11.37 16 15 N -0.61 -17.50 3.17 -849.07 -2.69 -20.19 16 16 C 0.09 1.71 7.67 86.64 0.66 2.38 16 17 C 0.10 1.77 7.21 86.65 0.62 2.40 16 18 N -0.57 -15.61 3.00 -900.27 -2.70 -18.32 16 19 C 0.68 19.91 7.85 129.79 1.02 20.93 16 20 O -0.55 -15.50 12.19 19.95 0.24 -15.26 16 21 O -0.35 -10.58 8.30 -48.37 -0.40 -10.99 16 22 C 0.11 2.48 1.13 -10.79 -0.01 2.46 16 23 C -0.18 -3.25 8.37 71.98 0.60 -2.65 16 24 C -0.14 -2.38 8.85 71.98 0.64 -1.74 16 25 C -0.18 -3.50 8.37 71.98 0.60 -2.90 16 26 C 0.69 22.54 7.57 179.47 1.36 23.90 16 27 O -0.57 -22.80 14.45 15.84 0.23 -22.57 16 28 H 0.09 3.47 7.84 -2.90 -0.02 3.45 16 29 H 0.11 3.50 8.06 -2.91 -0.02 3.48 16 30 H 0.10 3.86 6.76 -2.91 -0.02 3.84 16 31 H 0.06 2.67 6.96 -2.39 -0.02 2.66 16 32 H 0.06 2.75 5.78 -2.39 -0.01 2.73 16 33 H -0.01 -0.77 6.65 -2.39 -0.02 -0.78 16 34 H 0.02 0.79 7.66 -2.39 -0.02 0.77 16 35 H 0.26 14.32 8.31 -92.71 -0.77 13.55 16 36 H 0.05 1.94 5.91 -2.38 -0.01 1.92 16 37 H 0.11 3.32 7.56 -2.39 -0.02 3.30 16 38 H 0.12 1.50 8.14 -2.39 -0.02 1.48 16 39 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 40 H 0.11 1.67 8.14 -2.39 -0.02 1.65 16 41 H 0.12 1.51 8.14 -2.38 -0.02 1.50 16 42 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 43 H 0.10 1.25 8.14 -2.38 -0.02 1.23 16 44 H 0.07 1.52 5.88 -2.39 -0.01 1.50 16 45 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 46 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 47 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 48 H 0.07 1.59 5.88 -2.38 -0.01 1.58 16 49 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 50 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 Total: -1.00 -71.22 398.91 2.72 -68.51 By element: Atomic # 1 Polarization: 19.93 SS G_CDS: 0.92 Total: 20.85 kcal Atomic # 6 Polarization: 23.42 SS G_CDS: 9.18 Total: 32.60 kcal Atomic # 7 Polarization: -109.13 SS G_CDS: -9.48 Total: -118.61 kcal Atomic # 8 Polarization: -48.89 SS G_CDS: 0.07 Total: -48.82 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.47 kcal Total: -71.22 2.72 -68.51 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000497314202.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.168 kcal (2) G-P(sol) polarization free energy of solvation -71.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.56 seconds