Wall clock time and date at job start Tue Mar 31 2020 22:26:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 O 1.20760 * 119.99993 * 2 1 4 4 C 1.50697 * 120.00354 * 179.97438 * 2 1 3 5 5 H 1.08998 * 109.47153 * 316.38569 * 4 2 1 6 6 N 1.46504 * 109.47501 * 196.37855 * 4 2 1 7 7 C 1.34777 * 119.99986 * 154.99975 * 6 4 2 8 8 O 1.21279 * 119.99880 * 0.02562 * 7 6 4 9 9 C 1.50696 * 119.99948 * 180.02562 * 7 6 4 10 10 N 1.46901 * 109.47154 * 180.02562 * 9 7 6 11 11 C 1.46901 * 111.00158 * 170.00240 * 10 9 7 12 12 C 1.53231 * 109.34044 * 187.25328 * 11 10 9 13 13 N 1.47088 * 108.52230 * 306.16698 * 12 11 10 14 14 C 1.34772 * 120.88345 * 231.18779 * 13 12 11 15 15 O 1.21691 * 119.99702 * 5.55802 * 14 13 12 16 16 C 1.46375 * 119.99883 * 185.55995 * 14 13 12 17 17 H 1.07993 * 120.00346 * 354.94138 * 16 14 13 18 18 C 1.40048 * 119.99615 * 174.94436 * 16 14 13 19 19 N 1.30675 * 120.00218 * 0.02562 * 18 16 14 20 20 Si 1.86797 * 119.99781 * 179.97438 * 18 16 14 21 21 H 1.48503 * 109.47470 * 180.02562 * 20 18 16 22 22 H 1.48503 * 109.47274 * 300.00134 * 20 18 16 23 23 H 1.48502 * 109.47335 * 60.00008 * 20 18 16 24 24 C 1.47078 * 118.23406 * 51.45724 * 13 12 11 25 25 C 1.46903 * 110.99914 * 294.30137 * 10 9 7 26 26 C 1.53005 * 109.47005 * 76.37829 * 4 2 1 27 27 C 1.53006 * 109.47074 * 65.57533 * 26 4 2 28 28 C 1.53002 * 109.47218 * 185.57090 * 26 4 2 29 29 H 1.08998 * 109.47413 * 244.87675 * 1 2 3 30 30 H 1.09000 * 109.47186 * 4.87518 * 1 2 3 31 31 H 1.09003 * 109.47162 * 124.87778 * 1 2 3 32 32 H 0.96999 * 119.99475 * 335.00609 * 6 4 2 33 33 H 1.09008 * 109.47020 * 60.00068 * 9 7 6 34 34 H 1.09000 * 109.47527 * 300.00193 * 9 7 6 35 35 H 1.09005 * 109.49062 * 67.29226 * 11 10 9 36 36 H 1.09001 * 109.48965 * 307.21640 * 11 10 9 37 37 H 1.09001 * 109.62743 * 186.45901 * 12 11 10 38 38 H 1.09003 * 109.62955 * 65.87743 * 12 11 10 39 39 H 0.97003 * 120.00115 * 180.02562 * 19 18 16 40 40 H 1.09001 * 109.62698 * 68.25426 * 24 13 12 41 41 H 1.09000 * 109.63161 * 188.83057 * 24 13 12 42 42 H 1.08999 * 109.49427 * 292.71127 * 25 10 9 43 43 H 1.08999 * 109.49064 * 52.78480 * 25 10 9 44 44 H 1.09001 * 109.47352 * 305.57589 * 26 4 2 45 45 H 1.09001 * 109.46986 * 59.99832 * 27 26 4 46 46 H 1.08988 * 109.47116 * 180.02562 * 27 26 4 47 47 H 1.09004 * 109.47010 * 300.00255 * 27 26 4 48 48 H 1.09007 * 109.46776 * 52.63240 * 28 26 4 49 49 H 1.08995 * 109.46854 * 172.62982 * 28 26 4 50 50 H 1.08999 * 109.47448 * 292.63157 * 28 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1107 1.0458 0.0000 4 6 2.2605 -1.3050 0.0006 5 1 1.7979 -1.9914 0.7098 6 7 3.6523 -1.0652 0.3900 7 6 4.3778 -2.0571 0.9434 8 8 3.8785 -3.1484 1.1186 9 6 5.8092 -1.8102 1.3444 10 7 6.3758 -3.0382 1.9180 11 6 7.8278 -2.9122 2.1019 12 6 8.4047 -4.2662 2.5284 13 7 7.6668 -4.7371 3.7104 14 6 8.3196 -5.1361 4.8199 15 8 9.5284 -5.0152 4.8911 16 6 7.5747 -5.7149 5.9391 17 1 6.4956 -5.7474 5.9103 18 6 8.2613 -6.2263 7.0473 19 7 9.5670 -6.1864 7.0825 20 14 7.3107 -6.9643 8.4760 21 1 8.2627 -7.4304 9.5160 22 1 6.4101 -5.9355 9.0554 23 1 6.5034 -8.1132 7.9926 24 6 6.1976 -4.7667 3.6472 25 6 5.7074 -3.3875 3.1787 26 6 2.2213 -1.9172 -1.4011 27 6 2.9919 -1.0195 -2.3714 28 6 2.8648 -3.3049 -1.3698 29 1 -0.3634 -0.4363 0.9304 30 1 -0.3633 1.0239 -0.0873 31 1 -0.3634 -0.5877 -0.8431 32 1 4.0516 -0.1924 0.2495 33 1 5.8464 -1.0118 2.0856 34 1 6.3873 -1.5190 0.4674 35 1 8.0337 -2.1699 2.8731 36 1 8.2874 -2.6001 1.1641 37 1 9.4600 -4.1527 2.7768 38 1 8.2920 -4.9844 1.7162 39 1 10.0426 -6.5411 7.8499 40 1 5.8769 -5.5321 2.9405 41 1 5.7929 -4.9843 4.6356 42 1 5.9428 -2.6385 3.9349 43 1 4.6293 -3.4200 3.0219 44 1 1.1860 -2.0041 -1.7309 45 1 4.0272 -0.9326 -2.0417 46 1 2.9636 -1.4553 -3.3700 47 1 2.5335 -0.0308 -2.3937 48 1 2.4004 -3.9032 -0.5858 49 1 2.7211 -3.7939 -2.3332 50 1 3.9314 -3.2064 -1.1679 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000570407894.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:26:50 Heat of formation + Delta-G solvation = -93.524787 kcal Electronic energy + Delta-G solvation = -30633.844352 eV Core-core repulsion = 26468.712122 eV Total energy + Delta-G solvation = -4165.132230 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.96421 -39.52977 -38.39532 -36.67082 -35.96299 -33.51554 -33.17947 -32.43430 -31.11386 -30.55695 -28.91621 -27.42646 -27.06736 -26.14692 -24.19144 -22.99505 -21.60817 -20.81009 -20.35354 -19.70882 -18.77774 -17.46551 -17.01266 -16.54670 -16.33437 -15.71525 -15.66786 -15.31117 -14.98267 -14.68625 -14.57011 -14.31159 -14.20858 -14.11250 -13.89057 -13.65650 -13.44293 -13.08895 -12.91996 -12.67074 -12.50431 -12.45560 -12.30517 -11.99679 -11.67151 -11.62755 -11.41434 -11.34474 -11.16811 -11.12339 -10.94305 -10.86688 -10.68370 -10.47822 -10.21338 -10.17885 -9.95949 -9.69610 -9.20858 -8.82449 -8.15264 -7.55041 -7.12705 -6.16862 -4.61385 1.38745 2.56281 2.73926 3.17521 3.22242 3.24096 3.53180 4.05545 4.15091 4.38390 4.46141 4.55874 4.58522 4.63439 4.67861 4.78202 4.86556 4.91145 5.12373 5.17130 5.22380 5.24235 5.41589 5.42136 5.44971 5.56195 5.57843 5.71590 5.73459 5.76435 5.82746 5.87896 5.92304 5.97380 6.14283 6.22660 6.26124 6.35887 6.53065 6.60028 6.80382 6.92243 7.06643 7.30056 7.36668 7.48499 7.67311 8.14786 8.17699 8.41064 9.04989 9.48834 10.60744 10.79466 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.019159 B = 0.002381 C = 0.002261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1461.129509 B =11756.914097 C =12381.183430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.355 3.645 3 O -0.451 6.451 4 C 0.102 3.898 5 H 0.117 0.883 6 N -0.725 5.725 7 C 0.518 3.482 8 O -0.507 6.507 9 C 0.036 3.964 10 N -0.517 5.517 11 C 0.046 3.954 12 C 0.127 3.873 13 N -0.645 5.645 14 C 0.560 3.440 15 O -0.580 6.580 16 C -0.544 4.544 17 H 0.072 0.928 18 C 0.088 3.912 19 N -0.769 5.769 20 Si 0.906 3.094 21 H -0.281 1.281 22 H -0.268 1.268 23 H -0.267 1.267 24 C 0.133 3.867 25 C 0.038 3.962 26 C -0.098 4.098 27 C -0.150 4.150 28 C -0.138 4.138 29 H 0.098 0.902 30 H 0.085 0.915 31 H 0.095 0.905 32 H 0.405 0.595 33 H 0.060 0.940 34 H 0.100 0.900 35 H 0.035 0.965 36 H 0.073 0.927 37 H 0.087 0.913 38 H 0.050 0.950 39 H 0.268 0.732 40 H 0.052 0.948 41 H 0.092 0.908 42 H 0.029 0.971 43 H 0.090 0.910 44 H 0.081 0.919 45 H 0.060 0.940 46 H 0.059 0.941 47 H 0.050 0.950 48 H 0.068 0.932 49 H 0.049 0.951 50 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.427 12.095 -17.141 27.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.261 4.261 2 C 0.230 3.770 3 O -0.324 6.324 4 C -0.005 4.005 5 H 0.134 0.866 6 N -0.381 5.381 7 C 0.304 3.696 8 O -0.380 6.380 9 C -0.096 4.096 10 N -0.242 5.242 11 C -0.083 4.083 12 C 0.002 3.998 13 N -0.384 5.384 14 C 0.366 3.634 15 O -0.463 6.463 16 C -0.581 4.581 17 H 0.090 0.910 18 C -0.132 4.132 19 N -0.398 5.398 20 Si 0.731 3.269 21 H -0.206 1.206 22 H -0.193 1.193 23 H -0.192 1.192 24 C 0.008 3.992 25 C -0.090 4.090 26 C -0.117 4.117 27 C -0.208 4.208 28 C -0.195 4.195 29 H 0.116 0.884 30 H 0.104 0.896 31 H 0.114 0.886 32 H 0.241 0.759 33 H 0.078 0.922 34 H 0.118 0.882 35 H 0.053 0.947 36 H 0.092 0.908 37 H 0.105 0.895 38 H 0.068 0.932 39 H 0.079 0.921 40 H 0.070 0.930 41 H 0.110 0.890 42 H 0.047 0.953 43 H 0.109 0.891 44 H 0.099 0.901 45 H 0.079 0.921 46 H 0.078 0.922 47 H 0.070 0.930 48 H 0.087 0.913 49 H 0.068 0.932 50 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -17.659 11.474 -17.158 27.164 hybrid contribution -0.333 0.782 1.074 1.370 sum -17.992 12.256 -16.084 27.066 Atomic orbital electron populations 1.22311 0.93292 1.05389 1.05091 1.24846 0.92561 0.89730 0.69903 1.90411 1.71943 1.34756 1.35319 1.21470 0.83817 0.96479 0.98719 0.86558 1.45845 1.11931 1.15690 1.64650 1.20618 0.88163 0.84089 0.76724 1.90699 1.71685 1.23336 1.52311 1.21934 0.92729 0.93738 1.01152 1.61697 1.03842 1.30485 1.28223 1.22563 0.86767 0.99129 0.99818 1.21180 0.97489 0.92410 0.88700 1.48258 1.04995 1.70583 1.14566 1.18234 0.86946 0.77447 0.80757 1.90581 1.14826 1.59781 1.81146 1.20946 0.93652 1.41653 1.01826 0.90996 1.25727 0.94632 0.94166 0.98669 1.70010 1.07464 1.34171 1.28141 0.86458 0.79912 0.79884 0.80656 1.20585 1.19292 1.19194 1.21523 0.82224 0.94070 1.01375 1.22811 0.99646 0.98245 0.88309 1.21460 1.00829 0.96806 0.92639 1.21866 1.00988 0.98814 0.99087 1.21850 1.01821 0.94373 1.01450 0.88359 0.89575 0.88604 0.75876 0.92225 0.88154 0.94651 0.90825 0.89510 0.93207 0.92084 0.92979 0.88973 0.95312 0.89148 0.90070 0.92072 0.92171 0.93042 0.91338 0.93202 0.92087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -0.79 10.25 36.00 0.37 -0.42 16 2 C 0.35 2.47 5.57 -29.04 -0.16 2.30 16 3 O -0.45 -4.46 16.51 6.00 0.10 -4.36 16 4 C 0.10 0.76 2.28 -69.08 -0.16 0.61 16 5 H 0.12 0.93 7.57 -51.93 -0.39 0.53 16 6 N -0.73 -6.39 3.99 -54.93 -0.22 -6.61 16 7 C 0.52 5.94 6.15 -10.99 -0.07 5.88 16 8 O -0.51 -7.26 11.35 5.56 0.06 -7.20 16 9 C 0.04 0.42 5.45 -4.98 -0.03 0.39 16 10 N -0.52 -7.99 4.37 -235.47 -1.03 -9.02 16 11 C 0.05 0.74 5.62 -3.70 -0.02 0.72 16 12 C 0.13 2.57 6.61 -3.60 -0.02 2.55 16 13 N -0.65 -15.30 3.00 -173.84 -0.52 -15.82 16 14 C 0.56 16.30 7.62 -12.99 -0.10 16.20 16 15 O -0.58 -19.04 14.49 5.20 0.08 -18.97 16 16 C -0.54 -15.51 8.85 -35.63 -0.32 -15.83 16 17 H 0.07 1.87 5.74 -52.49 -0.30 1.57 16 18 C 0.09 2.47 5.50 -17.37 -0.10 2.38 16 19 N -0.77 -23.28 11.84 55.55 0.66 -22.62 16 20 Si 0.91 20.32 29.56 -169.99 -5.02 15.29 16 21 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 22 H -0.27 -5.84 7.11 56.52 0.40 -5.43 16 23 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 24 C 0.13 2.68 6.50 -3.37 -0.02 2.66 16 25 C 0.04 0.65 5.27 -3.46 -0.02 0.64 16 26 C -0.10 -0.67 2.73 -90.61 -0.25 -0.91 16 27 C -0.15 -1.03 8.79 37.16 0.33 -0.70 16 28 C -0.14 -1.25 7.67 37.16 0.29 -0.97 16 29 H 0.10 0.28 8.14 -51.93 -0.42 -0.15 16 30 H 0.09 0.35 8.12 -51.93 -0.42 -0.07 16 31 H 0.10 0.20 7.69 -51.93 -0.40 -0.20 16 32 H 0.41 3.23 7.72 -40.82 -0.32 2.92 16 33 H 0.06 0.65 8.13 -51.92 -0.42 0.23 16 34 H 0.10 0.95 7.97 -51.93 -0.41 0.53 16 35 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.07 0.97 7.99 -51.93 -0.41 0.56 16 37 H 0.09 1.92 7.04 -51.93 -0.37 1.56 16 38 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.27 7.39 8.29 -40.82 -0.34 7.05 16 40 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 41 H 0.09 1.92 5.47 -51.93 -0.28 1.63 16 42 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.09 1.49 5.76 -51.93 -0.30 1.19 16 44 H 0.08 0.40 7.69 -51.93 -0.40 0.00 16 45 H 0.06 0.47 7.46 -51.93 -0.39 0.08 16 46 H 0.06 0.38 8.14 -51.94 -0.42 -0.05 16 47 H 0.05 0.35 7.32 -51.93 -0.38 -0.03 16 48 H 0.07 0.71 7.45 -51.93 -0.39 0.33 16 49 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 50 H 0.06 0.69 6.29 -51.93 -0.33 0.36 16 LS Contribution 392.00 15.07 5.91 5.91 Total: -1.00 -36.79 392.00 -8.27 -45.06 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: -8.00 Total: 2.86 kcal Atomic # 6 Polarization: 15.76 SS G_CDS: -0.28 Total: 15.48 kcal Atomic # 7 Polarization: -52.96 SS G_CDS: -1.11 Total: -54.08 kcal Atomic # 8 Polarization: -30.76 SS G_CDS: 0.24 Total: -30.52 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.29 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -36.79 -8.27 -45.06 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000570407894.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.463 kcal (2) G-P(sol) polarization free energy of solvation -36.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds