Wall clock time and date at job start Tue Mar 31 2020 22:26:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 O 1.20760 * 119.99993 * 2 1 4 4 C 1.50697 * 120.00354 * 179.97438 * 2 1 3 5 5 H 1.08998 * 109.47153 * 316.38569 * 4 2 1 6 6 N 1.46504 * 109.47501 * 196.37855 * 4 2 1 7 7 C 1.34777 * 119.99986 * 154.99975 * 6 4 2 8 8 O 1.21279 * 119.99880 * 0.02562 * 7 6 4 9 9 C 1.50696 * 119.99948 * 180.02562 * 7 6 4 10 10 N 1.46901 * 109.47154 * 180.02562 * 9 7 6 11 11 C 1.46901 * 111.00158 * 170.00240 * 10 9 7 12 12 C 1.53231 * 109.34044 * 187.25328 * 11 10 9 13 13 N 1.47088 * 108.52230 * 306.16698 * 12 11 10 14 14 C 1.34772 * 120.88345 * 231.18779 * 13 12 11 15 15 O 1.21691 * 119.99702 * 5.55802 * 14 13 12 16 16 C 1.46375 * 119.99883 * 185.55995 * 14 13 12 17 17 H 1.07993 * 120.00346 * 354.94138 * 16 14 13 18 18 C 1.40048 * 119.99615 * 174.94436 * 16 14 13 19 19 N 1.30675 * 120.00218 * 0.02562 * 18 16 14 20 20 Si 1.86797 * 119.99781 * 179.97438 * 18 16 14 21 21 H 1.48503 * 109.47470 * 180.02562 * 20 18 16 22 22 H 1.48503 * 109.47274 * 300.00134 * 20 18 16 23 23 H 1.48502 * 109.47335 * 60.00008 * 20 18 16 24 24 C 1.47078 * 118.23406 * 51.45724 * 13 12 11 25 25 C 1.46903 * 110.99914 * 294.30137 * 10 9 7 26 26 C 1.53005 * 109.47005 * 76.37829 * 4 2 1 27 27 C 1.53006 * 109.47074 * 65.57533 * 26 4 2 28 28 C 1.53002 * 109.47218 * 185.57090 * 26 4 2 29 29 H 1.08998 * 109.47413 * 244.87675 * 1 2 3 30 30 H 1.09000 * 109.47186 * 4.87518 * 1 2 3 31 31 H 1.09003 * 109.47162 * 124.87778 * 1 2 3 32 32 H 0.96999 * 119.99475 * 335.00609 * 6 4 2 33 33 H 1.09008 * 109.47020 * 60.00068 * 9 7 6 34 34 H 1.09000 * 109.47527 * 300.00193 * 9 7 6 35 35 H 1.09005 * 109.49062 * 67.29226 * 11 10 9 36 36 H 1.09001 * 109.48965 * 307.21640 * 11 10 9 37 37 H 1.09001 * 109.62743 * 186.45901 * 12 11 10 38 38 H 1.09003 * 109.62955 * 65.87743 * 12 11 10 39 39 H 0.97003 * 120.00115 * 180.02562 * 19 18 16 40 40 H 1.09001 * 109.62698 * 68.25426 * 24 13 12 41 41 H 1.09000 * 109.63161 * 188.83057 * 24 13 12 42 42 H 1.08999 * 109.49427 * 292.71127 * 25 10 9 43 43 H 1.08999 * 109.49064 * 52.78480 * 25 10 9 44 44 H 1.09001 * 109.47352 * 305.57589 * 26 4 2 45 45 H 1.09001 * 109.46986 * 59.99832 * 27 26 4 46 46 H 1.08988 * 109.47116 * 180.02562 * 27 26 4 47 47 H 1.09004 * 109.47010 * 300.00255 * 27 26 4 48 48 H 1.09007 * 109.46776 * 52.63240 * 28 26 4 49 49 H 1.08995 * 109.46854 * 172.62982 * 28 26 4 50 50 H 1.08999 * 109.47448 * 292.63157 * 28 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1107 1.0458 0.0000 4 6 2.2605 -1.3050 0.0006 5 1 1.7979 -1.9914 0.7098 6 7 3.6523 -1.0652 0.3900 7 6 4.3778 -2.0571 0.9434 8 8 3.8785 -3.1484 1.1186 9 6 5.8092 -1.8102 1.3444 10 7 6.3758 -3.0382 1.9180 11 6 7.8278 -2.9122 2.1019 12 6 8.4047 -4.2662 2.5284 13 7 7.6668 -4.7371 3.7104 14 6 8.3196 -5.1361 4.8199 15 8 9.5284 -5.0152 4.8911 16 6 7.5747 -5.7149 5.9391 17 1 6.4956 -5.7474 5.9103 18 6 8.2613 -6.2263 7.0473 19 7 9.5670 -6.1864 7.0825 20 14 7.3107 -6.9643 8.4760 21 1 8.2627 -7.4304 9.5160 22 1 6.4101 -5.9355 9.0554 23 1 6.5034 -8.1132 7.9926 24 6 6.1976 -4.7667 3.6472 25 6 5.7074 -3.3875 3.1787 26 6 2.2213 -1.9172 -1.4011 27 6 2.9919 -1.0195 -2.3714 28 6 2.8648 -3.3049 -1.3698 29 1 -0.3634 -0.4363 0.9304 30 1 -0.3633 1.0239 -0.0873 31 1 -0.3634 -0.5877 -0.8431 32 1 4.0516 -0.1924 0.2495 33 1 5.8464 -1.0118 2.0856 34 1 6.3873 -1.5190 0.4674 35 1 8.0337 -2.1699 2.8731 36 1 8.2874 -2.6001 1.1641 37 1 9.4600 -4.1527 2.7768 38 1 8.2920 -4.9844 1.7162 39 1 10.0426 -6.5411 7.8499 40 1 5.8769 -5.5321 2.9405 41 1 5.7929 -4.9843 4.6356 42 1 5.9428 -2.6385 3.9349 43 1 4.6293 -3.4200 3.0219 44 1 1.1860 -2.0041 -1.7309 45 1 4.0272 -0.9326 -2.0417 46 1 2.9636 -1.4553 -3.3700 47 1 2.5335 -0.0308 -2.3937 48 1 2.4004 -3.9032 -0.5858 49 1 2.7211 -3.7939 -2.3332 50 1 3.9314 -3.2064 -1.1679 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000570407894.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:26:49 Heat of formation + Delta-G solvation = -121.190769 kcal Electronic energy + Delta-G solvation = -30635.044039 eV Core-core repulsion = 26468.712122 eV Total energy + Delta-G solvation = -4166.331917 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.70429 -40.59888 -39.80542 -38.18723 -36.96889 -35.07545 -34.60450 -34.11823 -32.11210 -31.56550 -30.13508 -28.53806 -28.05370 -27.54236 -25.55706 -24.55544 -22.56094 -22.18836 -21.19229 -20.59078 -20.30765 -18.52018 -18.24132 -17.87762 -17.61639 -17.08337 -16.41067 -16.34512 -16.17273 -16.01137 -15.82788 -15.70032 -15.43082 -15.31811 -15.01155 -14.85445 -14.42049 -14.25871 -14.13597 -13.55245 -13.45215 -13.28131 -13.18203 -13.03113 -13.02406 -12.87976 -12.75210 -12.69306 -12.65030 -12.34792 -12.22458 -12.07163 -12.00631 -11.92379 -11.83985 -11.73052 -10.92593 -10.81868 -10.69083 -9.98067 -9.80329 -9.45137 -9.02198 -8.29792 -6.84902 0.85803 1.38926 1.42588 1.54018 1.68355 1.95874 2.23521 2.44910 2.74292 2.97730 3.05464 3.58406 3.76876 3.82308 3.97685 3.98424 4.05198 4.11908 4.19874 4.22284 4.29516 4.39038 4.48539 4.51804 4.54187 4.57712 4.64270 4.67365 4.74991 4.82009 4.83256 4.89531 4.95407 4.96536 5.04355 5.14204 5.17521 5.18558 5.32478 5.36827 5.49841 5.52300 5.71783 5.91451 5.97192 6.12611 6.40500 6.41063 6.54347 6.86852 7.30150 7.40852 8.45264 8.66250 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.019159 B = 0.002381 C = 0.002261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1461.129509 B =11756.914097 C =12381.183430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.361 3.639 3 O -0.484 6.484 4 C 0.097 3.903 5 H 0.115 0.885 6 N -0.715 5.715 7 C 0.521 3.479 8 O -0.539 6.539 9 C 0.034 3.966 10 N -0.524 5.524 11 C 0.060 3.940 12 C 0.122 3.878 13 N -0.649 5.649 14 C 0.541 3.459 15 O -0.632 6.632 16 C -0.571 4.571 17 H 0.091 0.909 18 C 0.029 3.971 19 N -0.822 5.822 20 Si 0.996 3.004 21 H -0.274 1.274 22 H -0.254 1.254 23 H -0.253 1.253 24 C 0.132 3.868 25 C 0.054 3.946 26 C -0.092 4.092 27 C -0.147 4.147 28 C -0.131 4.131 29 H 0.112 0.888 30 H 0.085 0.915 31 H 0.119 0.881 32 H 0.411 0.589 33 H 0.073 0.927 34 H 0.128 0.872 35 H 0.024 0.976 36 H 0.112 0.888 37 H 0.060 0.940 38 H 0.058 0.942 39 H 0.274 0.726 40 H 0.055 0.945 41 H 0.082 0.918 42 H 0.019 0.981 43 H 0.102 0.898 44 H 0.109 0.891 45 H 0.050 0.950 46 H 0.066 0.934 47 H 0.053 0.947 48 H 0.052 0.948 49 H 0.057 0.943 50 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.499 12.912 -18.022 30.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.257 4.257 2 C 0.238 3.762 3 O -0.360 6.360 4 C -0.009 4.009 5 H 0.132 0.868 6 N -0.370 5.370 7 C 0.307 3.693 8 O -0.415 6.415 9 C -0.096 4.096 10 N -0.249 5.249 11 C -0.069 4.069 12 C -0.002 4.002 13 N -0.385 5.385 14 C 0.348 3.652 15 O -0.520 6.520 16 C -0.607 4.607 17 H 0.109 0.891 18 C -0.186 4.186 19 N -0.452 5.452 20 Si 0.815 3.185 21 H -0.198 1.198 22 H -0.178 1.178 23 H -0.177 1.177 24 C 0.008 3.992 25 C -0.075 4.075 26 C -0.111 4.111 27 C -0.204 4.204 28 C -0.189 4.189 29 H 0.130 0.870 30 H 0.104 0.896 31 H 0.137 0.863 32 H 0.248 0.752 33 H 0.090 0.910 34 H 0.146 0.854 35 H 0.042 0.958 36 H 0.130 0.870 37 H 0.078 0.922 38 H 0.077 0.923 39 H 0.084 0.916 40 H 0.073 0.927 41 H 0.101 0.899 42 H 0.037 0.963 43 H 0.120 0.880 44 H 0.127 0.873 45 H 0.069 0.931 46 H 0.085 0.915 47 H 0.072 0.928 48 H 0.071 0.929 49 H 0.076 0.924 50 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -20.794 12.338 -18.109 30.208 hybrid contribution 0.604 0.548 1.214 1.462 sum -20.190 12.886 -16.895 29.311 Atomic orbital electron populations 1.22355 0.90542 1.06052 1.06783 1.25154 0.93887 0.88640 0.68474 1.90414 1.72808 1.35586 1.37153 1.21651 0.82971 0.97148 0.99131 0.86771 1.45743 1.12456 1.15265 1.63491 1.20541 0.88150 0.84010 0.76591 1.90693 1.72252 1.24606 1.53984 1.22050 0.93199 0.92106 1.02255 1.61602 1.03220 1.33082 1.27020 1.22394 0.87490 0.95812 1.01191 1.21329 0.96135 0.95180 0.87575 1.48153 1.06592 1.69575 1.14218 1.18641 0.86613 0.77537 0.82425 1.90527 1.16893 1.61952 1.82625 1.21465 0.94788 1.41953 1.02471 0.89133 1.26998 0.95618 0.94018 1.01987 1.70184 1.09956 1.35442 1.29610 0.85105 0.78258 0.79269 0.75900 1.19819 1.17774 1.17739 1.21622 0.80031 0.96396 1.01153 1.22573 1.00165 0.95809 0.88943 1.21451 1.02207 0.95287 0.92194 1.21829 1.00322 0.98911 0.99371 1.21755 1.00258 0.95638 1.01233 0.86973 0.89602 0.86252 0.75221 0.90953 0.85384 0.95768 0.86992 0.92182 0.92349 0.91577 0.92675 0.89938 0.96280 0.88032 0.87340 0.93137 0.91478 0.92835 0.92909 0.92370 0.94428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -0.94 10.25 71.23 0.73 -0.21 16 2 C 0.36 4.21 5.57 29.10 0.16 4.37 16 3 O -0.48 -8.76 16.51 -1.45 -0.02 -8.78 16 4 C 0.10 1.26 2.28 44.25 0.10 1.36 16 5 H 0.11 1.61 7.57 -2.39 -0.02 1.59 16 6 N -0.71 -11.35 3.99 -446.09 -1.78 -13.13 16 7 C 0.52 11.10 6.15 87.66 0.54 11.64 16 8 O -0.54 -14.86 11.35 -3.03 -0.03 -14.89 16 9 C 0.03 0.72 5.45 85.56 0.47 1.19 16 10 N -0.52 -15.44 4.37 -898.88 -3.93 -19.36 16 11 C 0.06 1.87 5.62 86.38 0.49 2.35 16 12 C 0.12 5.04 6.61 86.34 0.57 5.62 16 13 N -0.65 -31.64 3.00 -822.13 -2.47 -34.11 16 14 C 0.54 32.83 7.62 86.36 0.66 33.49 16 15 O -0.63 -43.73 14.49 -4.32 -0.06 -43.80 16 16 C -0.57 -33.29 8.85 24.83 0.22 -33.07 16 17 H 0.09 4.76 5.74 -2.91 -0.02 4.74 16 18 C 0.03 1.64 5.50 85.30 0.47 2.11 16 19 N -0.82 -51.44 11.84 21.84 0.26 -51.18 16 20 Si 1.00 41.79 29.56 68.60 2.03 43.82 16 21 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 22 H -0.25 -10.00 7.11 99.48 0.71 -9.29 16 23 H -0.25 -10.01 7.11 99.48 0.71 -9.30 16 24 C 0.13 5.36 6.50 86.50 0.56 5.92 16 25 C 0.05 1.80 5.27 86.54 0.46 2.26 16 26 C -0.09 -1.04 2.73 -10.79 -0.03 -1.07 16 27 C -0.15 -1.69 8.79 71.98 0.63 -1.05 16 28 C -0.13 -2.21 7.67 71.98 0.55 -1.66 16 29 H 0.11 0.27 8.14 -2.39 -0.02 0.26 16 30 H 0.09 0.47 8.12 -2.39 -0.02 0.45 16 31 H 0.12 0.02 7.69 -2.39 -0.02 0.01 16 32 H 0.41 5.80 7.72 -92.71 -0.72 5.08 16 33 H 0.07 1.39 8.13 -2.38 -0.02 1.37 16 34 H 0.13 1.99 7.97 -2.39 -0.02 1.97 16 35 H 0.02 0.82 8.14 -2.38 -0.02 0.80 16 36 H 0.11 2.67 7.99 -2.39 -0.02 2.65 16 37 H 0.06 2.80 7.04 -2.39 -0.02 2.78 16 38 H 0.06 2.29 8.14 -2.39 -0.02 2.28 16 39 H 0.27 15.55 8.29 -92.71 -0.77 14.78 16 40 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 41 H 0.08 3.47 5.47 -2.39 -0.01 3.46 16 42 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 43 H 0.10 3.24 5.76 -2.39 -0.01 3.23 16 44 H 0.11 0.67 7.69 -2.39 -0.02 0.66 16 45 H 0.05 0.68 7.46 -2.39 -0.02 0.67 16 46 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 47 H 0.05 0.61 7.32 -2.38 -0.02 0.59 16 48 H 0.05 1.05 7.45 -2.38 -0.02 1.04 16 49 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 50 H 0.04 0.80 6.29 -2.39 -0.02 0.79 16 Total: -1.00 -84.43 392.00 0.80 -83.62 By element: Atomic # 1 Polarization: 24.34 SS G_CDS: 0.24 Total: 24.58 kcal Atomic # 6 Polarization: 26.66 SS G_CDS: 6.58 Total: 33.24 kcal Atomic # 7 Polarization: -109.87 SS G_CDS: -7.92 Total: -117.79 kcal Atomic # 8 Polarization: -67.35 SS G_CDS: -0.12 Total: -67.47 kcal Atomic # 14 Polarization: 41.79 SS G_CDS: 2.03 Total: 43.82 kcal Total: -84.43 0.80 -83.62 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000570407894.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.566 kcal (2) G-P(sol) polarization free energy of solvation -84.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds