Wall clock time and date at job start Tue Mar 31 2020 22:43:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50705 * 120.00149 * 2 1 4 4 C 1.53004 * 109.46669 * 124.99890 * 3 2 1 5 5 O 1.42898 * 109.46757 * 180.02562 * 4 3 2 6 6 C 1.42899 * 114.00163 * 180.02562 * 5 4 3 7 7 C 1.53004 * 109.47362 * 180.02562 * 6 5 4 8 8 N 1.46495 * 109.47074 * 64.99884 * 7 6 5 9 9 C 1.34781 * 120.00242 * 180.02562 * 8 7 6 10 10 O 1.21356 * 119.99422 * 359.97438 * 9 8 7 11 11 C 1.49451 * 120.00373 * 180.02562 * 9 8 7 12 12 O 1.21348 * 119.99652 * 359.97438 * 11 9 8 13 13 N 1.34775 * 119.99841 * 179.97438 * 11 9 8 14 14 C 1.46503 * 119.99376 * 179.97438 * 13 11 9 15 15 C 1.53065 * 109.44591 * 84.79556 * 14 13 11 16 16 C 1.53192 * 109.29648 * 181.23295 * 15 14 13 17 17 N 1.46922 * 108.89269 * 305.57538 * 16 15 14 18 18 C 1.36942 * 120.62796 * 233.51528 * 17 16 15 19 19 H 1.08007 * 119.99636 * 151.83092 * 18 17 16 20 20 C 1.38806 * 120.00203 * 331.83144 * 18 17 16 21 21 N 1.31624 * 120.00191 * 343.08250 * 20 18 17 22 22 Si 1.86800 * 120.00146 * 163.07925 * 20 18 17 23 23 H 1.48503 * 109.47195 * 89.99708 * 22 20 18 24 24 H 1.48498 * 109.47355 * 210.00264 * 22 20 18 25 25 H 1.48504 * 109.46850 * 330.00278 * 22 20 18 26 26 C 1.46924 * 118.73925 * 53.53382 * 17 16 15 27 27 C 1.53049 * 109.45272 * 204.99544 * 14 13 11 28 28 H 1.08004 * 120.00085 * 359.97438 * 1 2 3 29 29 H 1.08002 * 120.00463 * 180.02562 * 1 2 3 30 30 H 1.08004 * 120.00091 * 179.97438 * 2 1 3 31 31 H 1.08994 * 109.46643 * 5.00566 * 3 2 1 32 32 H 1.08989 * 109.47218 * 245.00076 * 3 2 1 33 33 H 1.09002 * 109.46891 * 60.00600 * 4 3 2 34 34 H 1.08997 * 109.47730 * 300.00016 * 4 3 2 35 35 H 1.08999 * 109.47366 * 60.00287 * 6 5 4 36 36 H 1.08999 * 109.46937 * 300.00130 * 6 5 4 37 37 H 1.09003 * 109.46756 * 305.00031 * 7 6 5 38 38 H 1.09000 * 109.47454 * 185.00014 * 7 6 5 39 39 H 0.97005 * 120.00355 * 0.02562 * 8 7 6 40 40 H 0.96995 * 120.00047 * 359.97438 * 13 11 9 41 41 H 1.08996 * 109.45813 * 324.96250 * 14 13 11 42 42 H 1.09005 * 109.39523 * 61.35360 * 15 14 13 43 43 H 1.09004 * 109.62174 * 301.25047 * 15 14 13 44 44 H 1.09003 * 109.58615 * 185.71531 * 16 15 14 45 45 H 1.08998 * 109.58372 * 65.43477 * 16 15 14 46 46 H 0.96995 * 120.00379 * 180.02562 * 21 20 18 47 47 H 1.09007 * 109.58325 * 66.18371 * 26 17 16 48 48 H 1.08996 * 109.58499 * 186.46256 * 26 17 16 49 49 H 1.09002 * 109.49883 * 58.67895 * 27 14 13 50 50 H 1.08997 * 109.52642 * 298.59203 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3330 1.1817 5 8 3.7491 2.5707 1.1821 6 6 4.6885 2.6995 2.2511 7 6 5.3903 4.0556 2.1530 8 7 4.4138 5.1271 2.3640 9 6 4.8073 6.4155 2.3217 10 8 5.9707 6.6878 2.1093 11 6 3.8113 7.5086 2.5375 12 8 2.6481 7.2361 2.7503 13 7 4.2050 8.7969 2.4957 14 6 3.2284 9.8683 2.7067 15 6 3.0603 10.1163 4.2077 16 6 2.0160 11.2158 4.4254 17 7 2.4083 12.4037 3.6551 18 6 2.5176 13.6254 4.2641 19 1 3.2022 14.3640 3.8738 20 6 1.7486 13.9144 5.3830 21 7 0.6947 13.1782 5.6654 22 14 2.2095 15.3482 6.4881 23 1 1.5306 16.5795 6.0104 24 1 1.7839 15.0567 7.8806 25 1 3.6805 15.5483 6.4517 26 6 2.6808 12.2562 2.2189 27 6 3.7202 11.1476 2.0255 28 1 -0.5400 0.9353 0.0004 29 1 -0.5401 -0.9353 0.0004 30 1 1.8500 -0.9353 0.0004 31 1 1.3586 2.1316 0.0897 32 1 2.6212 1.4026 -0.9313 33 1 3.7399 0.5064 1.0920 34 1 2.4773 1.2355 2.1131 35 1 5.4281 1.9016 2.1831 36 1 4.1654 2.6297 3.2048 37 1 5.8386 4.1619 1.1652 38 1 6.1683 4.1181 2.9138 39 1 3.4839 4.9094 2.5341 40 1 5.1348 9.0145 2.3259 41 1 2.2695 9.5750 2.2794 42 1 4.0139 10.4312 4.6316 43 1 2.7301 9.1991 4.6955 44 1 1.9657 11.4674 5.4848 45 1 1.0410 10.8659 4.0863 46 1 0.1572 13.3803 6.4470 47 1 1.7610 11.9897 1.6980 48 1 3.0666 13.1951 1.8219 49 1 3.8602 10.9620 0.9605 50 1 4.6672 11.4555 2.4687 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588124028.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:32 Heat of formation + Delta-G solvation = -82.950317 kcal Electronic energy + Delta-G solvation = -28891.015145 eV Core-core repulsion = 24726.341459 eV Total energy + Delta-G solvation = -4164.673687 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -40.62879 -39.03024 -38.44017 -37.28341 -35.87179 -35.00741 -34.29076 -32.12372 -30.73333 -30.11589 -29.55020 -28.96625 -25.76138 -24.36010 -23.47845 -22.70875 -22.26108 -21.58768 -20.31368 -20.21754 -19.53820 -18.30627 -17.30485 -17.07968 -16.76156 -16.52914 -15.85492 -15.65118 -15.55090 -15.33793 -14.76320 -14.49068 -14.29236 -13.92679 -13.82972 -13.62807 -13.52050 -13.30315 -13.01014 -12.95761 -12.54458 -12.42912 -12.22595 -11.89857 -11.65866 -11.58793 -11.50217 -11.46766 -11.12008 -10.94381 -10.71139 -10.41636 -10.27157 -10.14358 -10.08530 -9.83653 -9.78386 -9.75777 -9.45908 -9.40652 -8.82161 -8.44002 -6.68683 -5.78809 -3.21731 1.47784 1.77046 2.37627 3.11209 3.29565 3.38050 3.45244 3.47524 3.69574 4.34265 4.48384 4.49791 4.53756 4.59914 4.65606 4.75232 4.81681 4.90867 4.95640 5.18381 5.25855 5.37197 5.39448 5.39566 5.44017 5.49904 5.57921 5.58837 5.79348 5.99310 6.04804 6.15337 6.20832 6.25738 6.27305 6.39436 6.55303 6.64098 6.66880 6.72624 6.77217 6.92248 6.98311 7.35104 7.46588 7.66916 7.77167 7.79839 8.12283 8.44995 9.20813 9.84022 10.40550 11.29916 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.017744 B = 0.001799 C = 0.001715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1577.583340 B =15561.445716 C =16320.501080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.158 4.158 3 C -0.095 4.095 4 C 0.067 3.933 5 O -0.386 6.386 6 C 0.049 3.951 7 C 0.121 3.879 8 N -0.698 5.698 9 C 0.508 3.492 10 O -0.525 6.525 11 C 0.503 3.497 12 O -0.521 6.521 13 N -0.691 5.691 14 C 0.148 3.852 15 C -0.148 4.148 16 C 0.174 3.826 17 N -0.592 5.592 18 C -0.255 4.255 19 H 0.066 0.934 20 C 0.003 3.997 21 N -0.902 5.902 22 Si 0.902 3.098 23 H -0.287 1.287 24 H -0.290 1.290 25 H -0.279 1.279 26 C 0.149 3.851 27 C -0.140 4.140 28 H 0.099 0.901 29 H 0.099 0.901 30 H 0.109 0.891 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.050 0.950 34 H 0.052 0.948 35 H 0.070 0.930 36 H 0.060 0.940 37 H 0.082 0.918 38 H 0.089 0.911 39 H 0.416 0.584 40 H 0.407 0.593 41 H 0.086 0.914 42 H 0.057 0.943 43 H 0.054 0.946 44 H 0.090 0.910 45 H 0.022 0.978 46 H 0.254 0.746 47 H 0.021 0.979 48 H 0.060 0.940 49 H 0.058 0.942 50 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.757 -26.094 -9.231 28.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.176 4.176 3 C -0.132 4.132 4 C -0.010 4.010 5 O -0.306 6.306 6 C -0.028 4.028 7 C -0.003 4.003 8 N -0.353 5.353 9 C 0.289 3.711 10 O -0.401 6.401 11 C 0.282 3.718 12 O -0.397 6.397 13 N -0.342 5.342 14 C 0.046 3.954 15 C -0.188 4.188 16 C 0.047 3.953 17 N -0.315 5.315 18 C -0.384 4.384 19 H 0.084 0.916 20 C -0.196 4.196 21 N -0.546 5.546 22 Si 0.732 3.268 23 H -0.214 1.214 24 H -0.216 1.216 25 H -0.205 1.205 26 C 0.022 3.978 27 C -0.180 4.180 28 H 0.118 0.882 29 H 0.117 0.883 30 H 0.127 0.873 31 H 0.096 0.904 32 H 0.099 0.901 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.088 0.912 36 H 0.078 0.922 37 H 0.100 0.900 38 H 0.107 0.893 39 H 0.253 0.747 40 H 0.243 0.757 41 H 0.104 0.896 42 H 0.076 0.924 43 H 0.073 0.927 44 H 0.108 0.892 45 H 0.040 0.960 46 H 0.064 0.936 47 H 0.039 0.961 48 H 0.078 0.922 49 H 0.076 0.924 50 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 6.605 -25.908 -9.226 28.284 hybrid contribution 0.249 0.316 0.826 0.918 sum 6.853 -25.592 -8.400 27.794 Atomic orbital electron populations 1.23954 0.95928 1.02244 1.00000 1.22776 0.96033 0.97890 1.00912 1.20660 0.98008 0.96094 0.98408 1.22447 0.93938 0.85963 0.98613 1.87929 1.55034 1.37872 1.49723 1.22772 0.92450 0.96791 0.90741 1.21492 0.91283 0.84072 1.03402 1.45678 1.13842 1.04731 1.71034 1.20388 0.88589 0.84217 0.77890 1.90749 1.18529 1.83485 1.47321 1.19969 0.88258 0.84333 0.79191 1.90773 1.18211 1.83217 1.47547 1.46186 1.13903 1.04906 1.69221 1.21238 0.91620 0.84978 0.97613 1.22600 1.02119 1.00403 0.93662 1.20756 0.91899 0.83666 0.98942 1.44095 1.80245 1.05085 1.02060 1.19165 1.17131 0.92208 1.09907 0.91631 1.25060 0.95240 0.98273 1.01015 1.70030 1.15362 1.41213 1.27970 0.86307 0.78174 0.82153 0.80187 1.21377 1.21574 1.20482 1.20844 0.94462 0.95307 0.87233 1.22359 1.01369 0.95433 0.98813 0.88234 0.88263 0.87258 0.90372 0.90092 0.93132 0.92979 0.91222 0.92153 0.90014 0.89326 0.74706 0.75740 0.89594 0.92405 0.92720 0.89157 0.96023 0.93573 0.96103 0.92160 0.92359 0.91559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.03 14.32 29.02 0.42 -0.61 16 2 C -0.16 -0.88 9.52 -36.02 -0.34 -1.23 16 3 C -0.09 -0.60 6.03 -27.88 -0.17 -0.77 16 4 C 0.07 0.42 5.92 37.16 0.22 0.64 16 5 O -0.39 -3.15 10.29 -35.23 -0.36 -3.51 16 6 C 0.05 0.30 6.07 37.16 0.23 0.53 16 7 C 0.12 0.97 6.06 -4.04 -0.02 0.94 16 8 N -0.70 -7.47 5.50 -60.73 -0.33 -7.80 16 9 C 0.51 6.87 7.89 -11.58 -0.09 6.78 16 10 O -0.52 -7.90 16.48 5.49 0.09 -7.81 16 11 C 0.50 7.75 7.85 -11.59 -0.09 7.66 16 12 O -0.52 -9.23 16.14 5.50 0.09 -9.14 16 13 N -0.69 -10.45 5.07 -54.18 -0.27 -10.73 16 14 C 0.15 2.59 2.41 -67.87 -0.16 2.42 16 15 C -0.15 -2.92 5.66 -26.60 -0.15 -3.08 16 16 C 0.17 4.19 5.30 -3.71 -0.02 4.17 16 17 N -0.59 -14.69 3.00 -172.32 -0.52 -15.21 16 18 C -0.25 -6.93 9.58 -15.06 -0.14 -7.07 16 19 H 0.07 1.74 7.89 -52.48 -0.41 1.33 16 20 C 0.00 0.08 4.92 -17.43 -0.09 -0.01 16 21 N -0.90 -26.20 11.20 55.49 0.62 -25.58 16 22 Si 0.90 21.61 29.59 -169.99 -5.03 16.58 16 23 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 24 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 25 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 26 C 0.15 3.04 6.52 -3.71 -0.02 3.02 16 27 C -0.14 -2.34 5.55 -26.61 -0.15 -2.49 16 28 H 0.10 0.56 7.84 -52.48 -0.41 0.15 16 29 H 0.10 0.44 8.06 -52.49 -0.42 0.02 16 30 H 0.11 0.48 8.06 -52.48 -0.42 0.06 16 31 H 0.08 0.57 7.79 -51.93 -0.40 0.16 16 32 H 0.08 0.52 8.14 -51.94 -0.42 0.10 16 33 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 34 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 35 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 36 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 37 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.42 4.31 7.94 -40.82 -0.32 3.99 16 40 H 0.41 5.53 8.07 -40.82 -0.33 5.20 16 41 H 0.09 1.63 7.58 -51.93 -0.39 1.24 16 42 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 43 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 44 H 0.09 2.43 6.06 -51.93 -0.31 2.12 16 45 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 46 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 47 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 48 H 0.06 1.19 7.93 -51.93 -0.41 0.78 16 49 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 50 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 LS Contribution 413.55 15.07 6.23 6.23 Total: -1.00 -32.19 413.55 -8.56 -40.75 By element: Atomic # 1 Polarization: 13.79 SS G_CDS: -8.48 Total: 5.31 kcal Atomic # 6 Polarization: 11.49 SS G_CDS: -0.59 Total: 10.90 kcal Atomic # 7 Polarization: -58.81 SS G_CDS: -0.50 Total: -59.31 kcal Atomic # 8 Polarization: -20.28 SS G_CDS: -0.18 Total: -20.46 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.03 Total: 16.58 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -32.19 -8.56 -40.75 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588124028.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.201 kcal (2) G-P(sol) polarization free energy of solvation -32.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds