Wall clock time and date at job start Tue Mar 31 2020 22:43:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50705 * 120.00149 * 2 1 4 4 C 1.53004 * 109.46669 * 124.99890 * 3 2 1 5 5 O 1.42898 * 109.46757 * 180.02562 * 4 3 2 6 6 C 1.42899 * 114.00163 * 180.02562 * 5 4 3 7 7 C 1.53004 * 109.47362 * 180.02562 * 6 5 4 8 8 N 1.46495 * 109.47074 * 64.99884 * 7 6 5 9 9 C 1.34781 * 120.00242 * 180.02562 * 8 7 6 10 10 O 1.21356 * 119.99422 * 359.97438 * 9 8 7 11 11 C 1.49451 * 120.00373 * 180.02562 * 9 8 7 12 12 O 1.21348 * 119.99652 * 359.97438 * 11 9 8 13 13 N 1.34775 * 119.99841 * 179.97438 * 11 9 8 14 14 C 1.46503 * 119.99376 * 179.97438 * 13 11 9 15 15 C 1.53065 * 109.44591 * 84.79556 * 14 13 11 16 16 C 1.53192 * 109.29648 * 181.23295 * 15 14 13 17 17 N 1.46922 * 108.89269 * 305.57538 * 16 15 14 18 18 C 1.36942 * 120.62796 * 233.51528 * 17 16 15 19 19 H 1.08007 * 119.99636 * 151.83092 * 18 17 16 20 20 C 1.38806 * 120.00203 * 331.83144 * 18 17 16 21 21 N 1.31624 * 120.00191 * 343.08250 * 20 18 17 22 22 Si 1.86800 * 120.00146 * 163.07925 * 20 18 17 23 23 H 1.48503 * 109.47195 * 89.99708 * 22 20 18 24 24 H 1.48498 * 109.47355 * 210.00264 * 22 20 18 25 25 H 1.48504 * 109.46850 * 330.00278 * 22 20 18 26 26 C 1.46924 * 118.73925 * 53.53382 * 17 16 15 27 27 C 1.53049 * 109.45272 * 204.99544 * 14 13 11 28 28 H 1.08004 * 120.00085 * 359.97438 * 1 2 3 29 29 H 1.08002 * 120.00463 * 180.02562 * 1 2 3 30 30 H 1.08004 * 120.00091 * 179.97438 * 2 1 3 31 31 H 1.08994 * 109.46643 * 5.00566 * 3 2 1 32 32 H 1.08989 * 109.47218 * 245.00076 * 3 2 1 33 33 H 1.09002 * 109.46891 * 60.00600 * 4 3 2 34 34 H 1.08997 * 109.47730 * 300.00016 * 4 3 2 35 35 H 1.08999 * 109.47366 * 60.00287 * 6 5 4 36 36 H 1.08999 * 109.46937 * 300.00130 * 6 5 4 37 37 H 1.09003 * 109.46756 * 305.00031 * 7 6 5 38 38 H 1.09000 * 109.47454 * 185.00014 * 7 6 5 39 39 H 0.97005 * 120.00355 * 0.02562 * 8 7 6 40 40 H 0.96995 * 120.00047 * 359.97438 * 13 11 9 41 41 H 1.08996 * 109.45813 * 324.96250 * 14 13 11 42 42 H 1.09005 * 109.39523 * 61.35360 * 15 14 13 43 43 H 1.09004 * 109.62174 * 301.25047 * 15 14 13 44 44 H 1.09003 * 109.58615 * 185.71531 * 16 15 14 45 45 H 1.08998 * 109.58372 * 65.43477 * 16 15 14 46 46 H 0.96995 * 120.00379 * 180.02562 * 21 20 18 47 47 H 1.09007 * 109.58325 * 66.18371 * 26 17 16 48 48 H 1.08996 * 109.58499 * 186.46256 * 26 17 16 49 49 H 1.09002 * 109.49883 * 58.67895 * 27 14 13 50 50 H 1.08997 * 109.52642 * 298.59203 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3330 1.1817 5 8 3.7491 2.5707 1.1821 6 6 4.6885 2.6995 2.2511 7 6 5.3903 4.0556 2.1530 8 7 4.4138 5.1271 2.3640 9 6 4.8073 6.4155 2.3217 10 8 5.9707 6.6878 2.1093 11 6 3.8113 7.5086 2.5375 12 8 2.6481 7.2361 2.7503 13 7 4.2050 8.7969 2.4957 14 6 3.2284 9.8683 2.7067 15 6 3.0603 10.1163 4.2077 16 6 2.0160 11.2158 4.4254 17 7 2.4083 12.4037 3.6551 18 6 2.5176 13.6254 4.2641 19 1 3.2022 14.3640 3.8738 20 6 1.7486 13.9144 5.3830 21 7 0.6947 13.1782 5.6654 22 14 2.2095 15.3482 6.4881 23 1 1.5306 16.5795 6.0104 24 1 1.7839 15.0567 7.8806 25 1 3.6805 15.5483 6.4517 26 6 2.6808 12.2562 2.2189 27 6 3.7202 11.1476 2.0255 28 1 -0.5400 0.9353 0.0004 29 1 -0.5401 -0.9353 0.0004 30 1 1.8500 -0.9353 0.0004 31 1 1.3586 2.1316 0.0897 32 1 2.6212 1.4026 -0.9313 33 1 3.7399 0.5064 1.0920 34 1 2.4773 1.2355 2.1131 35 1 5.4281 1.9016 2.1831 36 1 4.1654 2.6297 3.2048 37 1 5.8386 4.1619 1.1652 38 1 6.1683 4.1181 2.9138 39 1 3.4839 4.9094 2.5341 40 1 5.1348 9.0145 2.3259 41 1 2.2695 9.5750 2.2794 42 1 4.0139 10.4312 4.6316 43 1 2.7301 9.1991 4.6955 44 1 1.9657 11.4674 5.4848 45 1 1.0410 10.8659 4.0863 46 1 0.1572 13.3803 6.4470 47 1 1.7610 11.9897 1.6980 48 1 3.0666 13.1951 1.8219 49 1 3.8602 10.9620 0.9605 50 1 4.6672 11.4555 2.4687 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588124028.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:31 Heat of formation + Delta-G solvation = -105.733537 kcal Electronic energy + Delta-G solvation = -28892.003100 eV Core-core repulsion = 24726.341459 eV Total energy + Delta-G solvation = -4165.661641 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.79007 -40.11439 -39.18526 -38.81181 -36.64064 -36.07515 -35.40871 -33.90817 -31.83319 -31.38617 -31.23098 -29.56487 -27.35344 -25.74454 -23.97292 -23.93870 -23.74531 -22.88346 -21.49033 -21.08097 -20.68345 -19.58066 -18.66056 -18.13789 -17.74267 -17.31326 -16.99748 -16.83402 -16.57248 -16.34619 -16.00503 -15.67691 -15.39636 -15.34774 -15.13862 -14.78936 -14.70142 -14.44442 -14.25613 -14.10276 -13.76063 -13.64141 -13.21632 -13.04074 -12.89122 -12.72873 -12.63715 -12.55056 -12.36366 -12.14307 -12.08086 -12.05860 -11.92485 -11.84966 -11.57931 -11.40350 -10.74808 -10.58411 -10.57166 -10.35279 -10.26452 -10.16777 -8.70496 -7.87306 -5.33105 0.32746 1.29991 1.34432 1.48052 1.49749 1.59344 2.12537 2.52218 2.56378 2.69908 3.28947 3.41535 3.67061 3.81834 3.82821 4.01979 4.02283 4.13578 4.17814 4.27857 4.28725 4.40453 4.45476 4.49598 4.51646 4.63225 4.64943 4.73464 4.78594 4.81880 4.92278 4.99336 5.03817 5.04451 5.10101 5.11113 5.14783 5.30281 5.34186 5.45779 5.64661 5.70058 5.72576 5.85257 5.90623 6.20719 6.33864 6.39378 6.71992 6.94009 7.14213 7.84841 8.37138 9.19873 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.017744 B = 0.001799 C = 0.001715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1577.583340 B =15561.445716 C =16320.501080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.159 4.159 3 C -0.095 4.095 4 C 0.066 3.934 5 O -0.411 6.411 6 C 0.051 3.949 7 C 0.117 3.883 8 N -0.686 5.686 9 C 0.513 3.487 10 O -0.541 6.541 11 C 0.502 3.498 12 O -0.547 6.547 13 N -0.682 5.682 14 C 0.159 3.841 15 C -0.132 4.132 16 C 0.182 3.818 17 N -0.609 5.609 18 C -0.262 4.262 19 H 0.072 0.928 20 C -0.052 4.052 21 N -0.937 5.937 22 Si 0.968 3.032 23 H -0.284 1.284 24 H -0.295 1.295 25 H -0.269 1.269 26 C 0.142 3.858 27 C -0.125 4.125 28 H 0.093 0.907 29 H 0.111 0.889 30 H 0.125 0.875 31 H 0.063 0.937 32 H 0.078 0.922 33 H 0.068 0.932 34 H 0.055 0.945 35 H 0.096 0.904 36 H 0.070 0.930 37 H 0.077 0.923 38 H 0.102 0.898 39 H 0.418 0.582 40 H 0.418 0.582 41 H 0.071 0.929 42 H 0.060 0.940 43 H 0.052 0.948 44 H 0.057 0.943 45 H -0.005 1.005 46 H 0.250 0.750 47 H 0.016 0.984 48 H 0.068 0.932 49 H 0.092 0.908 50 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.802 -27.391 -9.933 30.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.177 4.177 3 C -0.133 4.133 4 C -0.010 4.010 5 O -0.331 6.331 6 C -0.025 4.025 7 C -0.005 4.005 8 N -0.340 5.340 9 C 0.294 3.706 10 O -0.419 6.419 11 C 0.283 3.717 12 O -0.425 6.425 13 N -0.334 5.334 14 C 0.055 3.945 15 C -0.173 4.173 16 C 0.056 3.944 17 N -0.333 5.333 18 C -0.392 4.392 19 H 0.090 0.910 20 C -0.248 4.248 21 N -0.583 5.583 22 Si 0.796 3.204 23 H -0.211 1.211 24 H -0.221 1.221 25 H -0.193 1.193 26 C 0.017 3.983 27 C -0.164 4.164 28 H 0.111 0.889 29 H 0.129 0.871 30 H 0.143 0.857 31 H 0.081 0.919 32 H 0.096 0.904 33 H 0.086 0.914 34 H 0.073 0.927 35 H 0.114 0.886 36 H 0.088 0.912 37 H 0.095 0.905 38 H 0.120 0.880 39 H 0.255 0.745 40 H 0.256 0.744 41 H 0.089 0.911 42 H 0.079 0.921 43 H 0.071 0.929 44 H 0.075 0.925 45 H 0.013 0.987 46 H 0.059 0.941 47 H 0.034 0.966 48 H 0.087 0.913 49 H 0.110 0.890 50 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 8.686 -27.239 -9.962 30.276 hybrid contribution -0.424 0.656 0.982 1.254 sum 8.262 -26.583 -8.980 29.250 Atomic orbital electron populations 1.24081 0.96178 1.02582 1.00139 1.22866 0.96054 0.98035 1.00751 1.20656 0.97896 0.96120 0.98603 1.22518 0.94158 0.85841 0.98470 1.87892 1.55676 1.38934 1.50579 1.22853 0.92803 0.96210 0.90630 1.21737 0.91171 0.84075 1.03546 1.45767 1.14534 1.04373 1.69280 1.19947 0.87756 0.84569 0.78369 1.90748 1.18730 1.83706 1.48681 1.20377 0.88312 0.84777 0.78270 1.90767 1.19479 1.83636 1.48618 1.45941 1.13968 1.04429 1.69028 1.20904 0.91809 0.86191 0.95593 1.22346 1.00535 0.98545 0.95829 1.20478 0.92152 0.84918 0.96881 1.44339 1.80383 1.04549 1.04010 1.19547 1.16615 0.93034 1.10049 0.91014 1.25842 0.95331 1.01038 1.02556 1.70192 1.16608 1.43165 1.28330 0.85274 0.78238 0.79092 0.77815 1.21087 1.22147 1.19339 1.21031 0.95407 0.97238 0.84666 1.22174 1.00039 0.93287 1.00900 0.88884 0.87081 0.85748 0.91863 0.90391 0.91404 0.92667 0.88619 0.91218 0.90498 0.88013 0.74491 0.74415 0.91098 0.92104 0.92882 0.92497 0.98704 0.94135 0.96574 0.91346 0.88978 0.90759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.02 14.32 67.79 0.97 -1.05 16 2 C -0.16 -1.60 9.52 25.65 0.24 -1.35 16 3 C -0.10 -1.16 6.03 29.85 0.18 -0.98 16 4 C 0.07 0.72 5.92 71.98 0.43 1.14 16 5 O -0.41 -6.03 10.29 -148.98 -1.53 -7.57 16 6 C 0.05 0.50 6.07 71.98 0.44 0.94 16 7 C 0.12 1.63 6.06 86.38 0.52 2.15 16 8 N -0.69 -13.64 5.50 -464.40 -2.55 -16.19 16 9 C 0.51 13.12 7.89 87.27 0.69 13.81 16 10 O -0.54 -15.29 16.48 -3.27 -0.05 -15.34 16 11 C 0.50 14.92 7.85 87.27 0.69 15.60 16 12 O -0.55 -19.15 16.14 -3.24 -0.05 -19.21 16 13 N -0.68 -19.49 5.07 -443.68 -2.25 -21.74 16 14 C 0.16 5.38 2.41 45.03 0.11 5.49 16 15 C -0.13 -5.25 5.66 30.68 0.17 -5.08 16 16 C 0.18 9.06 5.30 86.36 0.46 9.52 16 17 N -0.61 -30.46 3.00 -699.10 -2.09 -32.55 16 18 C -0.26 -14.32 9.58 84.03 0.81 -13.51 16 19 H 0.07 3.75 7.89 -2.91 -0.02 3.73 16 20 C -0.05 -2.94 4.92 84.86 0.42 -2.52 16 21 N -0.94 -56.15 11.20 21.65 0.24 -55.90 16 22 Si 0.97 44.89 29.59 68.60 2.03 46.92 16 23 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 24 H -0.30 -13.81 7.11 99.48 0.71 -13.11 16 25 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 26 C 0.14 5.69 6.52 86.36 0.56 6.25 16 27 C -0.12 -3.89 5.55 30.67 0.17 -3.72 16 28 H 0.09 1.06 7.84 -2.91 -0.02 1.04 16 29 H 0.11 0.87 8.06 -2.91 -0.02 0.84 16 30 H 0.12 0.86 8.06 -2.91 -0.02 0.83 16 31 H 0.06 0.93 7.79 -2.39 -0.02 0.91 16 32 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 34 H 0.06 0.55 8.14 -2.39 -0.02 0.54 16 35 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16 36 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 37 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.42 8.18 7.94 -92.70 -0.74 7.44 16 40 H 0.42 10.35 8.07 -92.71 -0.75 9.60 16 41 H 0.07 2.66 7.58 -2.39 -0.02 2.65 16 42 H 0.06 2.37 8.14 -2.38 -0.02 2.35 16 43 H 0.05 2.10 8.14 -2.38 -0.02 2.08 16 44 H 0.06 3.20 6.06 -2.39 -0.01 3.18 16 45 H -0.01 -0.28 8.14 -2.39 -0.02 -0.30 16 46 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 47 H 0.02 0.67 8.14 -2.38 -0.02 0.65 16 48 H 0.07 2.60 7.93 -2.39 -0.02 2.58 16 49 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 50 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 Total: -1.00 -70.26 413.55 0.04 -70.23 By element: Atomic # 1 Polarization: 25.22 SS G_CDS: -0.55 Total: 24.67 kcal Atomic # 6 Polarization: 19.83 SS G_CDS: 6.85 Total: 26.68 kcal Atomic # 7 Polarization: -119.73 SS G_CDS: -6.65 Total: -126.39 kcal Atomic # 8 Polarization: -40.47 SS G_CDS: -1.64 Total: -42.11 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Total: -70.26 0.04 -70.23 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588124028.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.508 kcal (2) G-P(sol) polarization free energy of solvation -70.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds