Wall clock time and date at job start Tue Mar 31 2020 23:40:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47244 * 2 1 4 4 H 1.09001 * 109.51565 * 54.89809 * 3 2 1 5 5 C 1.53300 * 109.51347 * 174.99698 * 3 2 1 6 6 N 1.47150 * 108.38614 * 172.27086 * 5 3 2 7 7 C 1.34781 * 120.97846 * 129.44366 * 6 5 3 8 8 O 1.21354 * 119.99847 * 1.43123 * 7 6 5 9 9 C 1.49444 * 119.99926 * 181.43570 * 7 6 5 10 10 O 1.21351 * 120.00180 * 353.62005 * 9 7 6 11 11 N 1.34778 * 120.00143 * 173.89468 * 9 7 6 12 12 C 1.46499 * 120.00185 * 179.72344 * 11 9 7 13 13 C 1.53035 * 109.45834 * 275.06787 * 12 11 9 14 14 C 1.53197 * 109.31071 * 178.61520 * 13 12 11 15 15 N 1.46930 * 108.77838 * 54.63474 * 14 13 12 16 16 C 1.36934 * 120.62963 * 126.36562 * 15 14 13 17 17 H 1.08002 * 119.99912 * 208.33322 * 16 15 14 18 18 C 1.38812 * 119.99913 * 28.33971 * 16 15 14 19 19 N 1.31619 * 120.00328 * 16.54633 * 18 16 15 20 20 Si 1.86800 * 119.99901 * 196.54622 * 18 16 15 21 21 H 1.48508 * 109.47159 * 89.99803 * 20 18 16 22 22 H 1.48499 * 109.47248 * 210.00063 * 20 18 16 23 23 H 1.48499 * 109.47073 * 330.00057 * 20 18 16 24 24 C 1.46924 * 118.73745 * 306.39689 * 15 14 13 25 25 C 1.53044 * 109.45725 * 154.99877 * 12 11 9 26 26 C 1.47145 * 118.03794 * 309.72234 * 6 5 3 27 27 C 1.52871 * 108.61212 * 50.22243 * 26 6 5 28 28 O 1.42959 * 109.29934 * 307.93834 * 27 26 6 29 29 H 1.09007 * 109.47025 * 60.00275 * 1 2 3 30 30 H 1.09001 * 109.47419 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47166 * 300.00264 * 1 2 3 32 32 H 1.08996 * 109.47255 * 239.99193 * 2 1 3 33 33 H 1.09003 * 109.46715 * 120.00122 * 2 1 3 34 34 H 1.09005 * 109.67621 * 52.55105 * 5 3 2 35 35 H 1.08998 * 109.71232 * 292.02257 * 5 3 2 36 36 H 0.97002 * 119.99581 * 359.72395 * 11 9 7 37 37 H 1.08992 * 109.45984 * 35.02983 * 12 11 9 38 38 H 1.09001 * 109.49894 * 298.56417 * 13 12 11 39 39 H 1.08997 * 109.50135 * 58.66492 * 13 12 11 40 40 H 1.08998 * 109.58768 * 294.84760 * 14 13 12 41 41 H 1.09001 * 109.58794 * 174.42403 * 14 13 12 42 42 H 0.96994 * 120.00347 * 179.97438 * 19 18 16 43 43 H 1.09001 * 109.58684 * 293.81547 * 24 15 14 44 44 H 1.09004 * 109.70597 * 173.46221 * 24 15 14 45 45 H 1.08989 * 109.50025 * 301.33574 * 25 12 11 46 46 H 1.09005 * 109.49905 * 61.40654 * 25 12 11 47 47 H 1.09005 * 109.67852 * 170.00492 * 26 6 5 48 48 H 1.09005 * 109.67998 * 290.55394 * 26 6 5 49 49 H 1.09001 * 109.58918 * 187.92270 * 27 26 6 50 50 H 1.09001 * 109.40833 * 67.84145 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6044 1.9827 0.8405 5 6 3.5678 1.4453 0.1260 6 7 4.0465 2.8239 -0.0632 7 6 4.8911 3.3923 0.8199 8 8 5.2885 2.7573 1.7746 9 6 5.3382 4.8047 0.6235 10 8 5.0354 5.4019 -0.3885 11 7 6.0825 5.4135 1.5679 12 6 6.5260 6.7961 1.3727 13 6 7.8187 6.8060 0.5537 14 6 8.2606 8.2544 0.3221 15 7 8.3647 8.9308 1.6223 16 6 9.5184 9.5738 1.9838 17 1 9.7821 9.6640 3.0273 18 6 10.3488 10.1098 1.0092 19 7 9.8952 10.2961 -0.2123 20 14 12.1102 10.5669 1.4311 21 1 12.9957 9.3991 1.1910 22 1 12.5452 11.7017 0.5778 23 1 12.1901 10.9630 2.8601 24 6 7.2077 8.9036 2.5274 25 6 6.7775 7.4479 2.7343 26 6 3.5708 3.5656 -1.2417 27 6 2.0472 3.4576 -1.3040 28 8 1.6674 2.0817 -1.2233 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8933 -0.5139 -0.8899 33 1 1.8932 -0.5139 0.8900 34 1 4.0003 0.7985 -0.6374 35 1 3.8558 1.0891 1.1151 36 1 6.3246 4.9362 2.3770 37 1 5.7549 7.3530 0.8405 38 1 8.5975 6.2705 1.0967 39 1 7.6448 6.3207 -0.4066 40 1 7.5247 8.7662 -0.2981 41 1 9.2309 8.2655 -0.1743 42 1 10.4754 10.6710 -0.8932 43 1 6.3859 9.4683 2.0871 44 1 7.4809 9.3437 3.4865 45 1 5.8626 7.4195 3.3259 46 1 7.5658 6.9060 3.2570 47 1 3.8604 4.6131 -1.1576 48 1 4.0037 3.1359 -2.1452 49 1 1.6890 3.8796 -2.2429 50 1 1.6109 4.0053 -0.4687 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588124775.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:40:40 Heat of formation + Delta-G solvation = -78.330758 kcal Electronic energy + Delta-G solvation = -30427.103835 eV Core-core repulsion = 26262.630468 eV Total energy + Delta-G solvation = -4164.473368 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 2.40 seconds Orbital eigenvalues (eV) -41.19016 -39.62217 -38.45841 -37.49236 -35.47898 -34.42016 -34.34246 -32.20919 -30.49497 -30.19010 -29.63530 -28.49441 -25.83930 -24.85999 -23.95753 -22.71061 -22.33535 -21.62614 -21.06840 -20.26373 -19.28281 -17.87181 -17.28721 -16.87700 -16.78150 -16.27903 -16.05768 -15.53043 -15.30047 -15.06448 -14.76146 -14.49997 -14.16779 -14.12286 -13.82056 -13.62871 -13.56809 -13.32124 -13.07860 -12.84346 -12.64681 -12.49155 -12.26341 -11.86753 -11.56646 -11.43348 -11.42772 -11.29910 -11.16692 -11.00995 -10.90655 -10.77702 -10.49462 -10.47204 -10.28721 -10.16408 -9.83955 -9.72989 -9.19095 -8.96608 -8.89124 -8.48762 -6.73610 -5.82540 -3.26274 1.30276 2.12079 3.08777 3.25501 3.36222 3.42259 3.43240 3.44209 4.17717 4.29444 4.46305 4.52424 4.60830 4.70873 4.87043 4.89748 5.03169 5.16550 5.18099 5.19389 5.33553 5.33950 5.37359 5.46683 5.48832 5.51817 5.55886 5.67952 5.71562 5.73813 5.91716 5.92021 5.98494 6.16134 6.24452 6.32868 6.47597 6.58065 6.67102 6.70890 6.79045 6.82733 6.86046 7.21526 7.30999 7.60796 7.62668 7.76345 7.97225 8.41025 9.16791 9.79563 10.35792 11.26105 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.031296 B = 0.002095 C = 0.002061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.469812 B =13361.863465 C =13581.780377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.115 4.115 3 C 0.079 3.921 4 H 0.063 0.937 5 C 0.077 3.923 6 N -0.586 5.586 7 C 0.510 3.490 8 O -0.523 6.523 9 C 0.508 3.492 10 O -0.512 6.512 11 N -0.685 5.685 12 C 0.147 3.853 13 C -0.148 4.148 14 C 0.174 3.826 15 N -0.592 5.592 16 C -0.255 4.255 17 H 0.067 0.933 18 C 0.003 3.997 19 N -0.901 5.901 20 Si 0.904 3.096 21 H -0.287 1.287 22 H -0.291 1.291 23 H -0.279 1.279 24 C 0.149 3.851 25 C -0.141 4.141 26 C 0.019 3.981 27 C 0.050 3.950 28 O -0.377 6.377 29 H 0.063 0.937 30 H 0.055 0.945 31 H 0.052 0.948 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.102 0.898 36 H 0.408 0.592 37 H 0.088 0.912 38 H 0.058 0.942 39 H 0.054 0.946 40 H 0.022 0.978 41 H 0.091 0.909 42 H 0.255 0.745 43 H 0.021 0.979 44 H 0.060 0.940 45 H 0.058 0.942 46 H 0.066 0.934 47 H 0.166 0.834 48 H 0.076 0.924 49 H 0.109 0.891 50 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.313 -18.264 0.267 25.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.153 4.153 3 C 0.021 3.979 4 H 0.081 0.919 5 C -0.045 4.045 6 N -0.320 5.320 7 C 0.293 3.707 8 O -0.399 6.399 9 C 0.289 3.711 10 O -0.391 6.391 11 N -0.335 5.335 12 C 0.045 3.955 13 C -0.188 4.188 14 C 0.048 3.952 15 N -0.315 5.315 16 C -0.385 4.385 17 H 0.084 0.916 18 C -0.196 4.196 19 N -0.546 5.546 20 Si 0.733 3.267 21 H -0.214 1.214 22 H -0.217 1.217 23 H -0.204 1.204 24 C 0.022 3.978 25 C -0.180 4.180 26 C -0.102 4.102 27 C -0.028 4.028 28 O -0.296 6.296 29 H 0.082 0.918 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.093 0.907 33 H 0.098 0.902 34 H 0.098 0.902 35 H 0.120 0.880 36 H 0.244 0.756 37 H 0.106 0.894 38 H 0.077 0.923 39 H 0.073 0.927 40 H 0.040 0.960 41 H 0.109 0.891 42 H 0.065 0.935 43 H 0.039 0.961 44 H 0.079 0.921 45 H 0.076 0.924 46 H 0.085 0.915 47 H 0.182 0.818 48 H 0.094 0.906 49 H 0.127 0.873 50 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -17.287 -18.150 -0.201 25.066 hybrid contribution 1.177 -0.008 0.582 1.313 sum -16.110 -18.159 0.381 24.278 Atomic orbital electron populations 1.21698 0.94804 1.01706 1.02405 1.21508 0.97113 0.93506 1.03130 1.22515 0.92657 0.94999 0.87774 0.91891 1.22466 0.94836 0.82766 1.04433 1.47968 1.44903 1.14405 1.24750 1.20294 0.79814 0.88006 0.82623 1.90746 1.55138 1.64132 1.29864 1.19974 0.79986 0.86811 0.84362 1.90337 1.55589 1.65856 1.27298 1.46256 1.50220 1.15806 1.21202 1.21294 0.97534 0.78741 0.97976 1.22609 0.95417 1.02226 0.98586 1.20773 1.01425 0.85707 0.87330 1.44099 1.10577 1.60646 1.16159 1.19183 0.97109 1.29652 0.92537 0.91570 1.25076 0.99512 0.98443 0.96544 1.70018 1.34733 1.47017 1.02785 0.86274 0.85000 0.77686 0.77693 1.21427 1.21736 1.20413 1.20836 0.90605 0.91282 0.95084 1.22378 1.00638 1.00199 0.94832 1.23851 0.94964 1.04232 0.87180 1.22958 0.94009 0.82702 1.03097 1.87949 1.79965 1.24121 1.37560 0.91830 0.92546 0.92876 0.90733 0.90247 0.90159 0.87976 0.75586 0.89393 0.92338 0.92682 0.95959 0.89065 0.93527 0.96071 0.92121 0.92367 0.91519 0.81792 0.90592 0.87315 0.92810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.81 37.16 0.36 -0.56 16 2 C -0.11 -0.74 5.65 -26.74 -0.15 -0.89 16 3 C 0.08 0.67 2.77 -26.58 -0.07 0.60 16 4 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 5 C 0.08 0.74 5.93 -3.53 -0.02 0.71 16 6 N -0.59 -6.76 3.03 -173.04 -0.52 -7.28 16 7 C 0.51 6.89 7.78 -11.59 -0.09 6.80 16 8 O -0.52 -7.84 15.97 5.49 0.09 -7.75 16 9 C 0.51 7.33 7.77 -11.59 -0.09 7.24 16 10 O -0.51 -8.04 12.71 5.50 0.07 -7.97 16 11 N -0.68 -9.71 5.07 -54.20 -0.27 -9.99 16 12 C 0.15 2.41 2.41 -67.89 -0.16 2.25 16 13 C -0.15 -2.82 5.65 -26.61 -0.15 -2.97 16 14 C 0.17 4.07 5.30 -3.71 -0.02 4.06 16 15 N -0.59 -14.32 2.99 -172.31 -0.52 -14.84 16 16 C -0.26 -6.82 9.59 -15.06 -0.14 -6.97 16 17 H 0.07 1.73 7.88 -52.49 -0.41 1.32 16 18 C 0.00 0.09 4.92 -17.43 -0.09 0.00 16 19 N -0.90 -25.82 11.18 55.49 0.62 -25.20 16 20 Si 0.90 21.41 29.58 -169.99 -5.03 16.38 16 21 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 22 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 23 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 24 C 0.15 2.94 6.51 -3.71 -0.02 2.92 16 25 C -0.14 -2.24 5.55 -26.61 -0.15 -2.38 16 26 C 0.02 0.20 6.35 -3.76 -0.02 0.17 16 27 C 0.05 0.44 6.97 37.09 0.26 0.70 16 28 O -0.38 -3.65 9.94 -35.23 -0.35 -4.00 16 29 H 0.06 0.46 7.83 -51.93 -0.41 0.05 16 30 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.10 0.99 7.09 -51.93 -0.37 0.62 16 36 H 0.41 5.24 8.09 -40.82 -0.33 4.91 16 37 H 0.09 1.54 7.58 -51.93 -0.39 1.15 16 38 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 39 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.09 2.41 6.06 -51.93 -0.31 2.09 16 42 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 43 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.06 1.16 7.94 -51.93 -0.41 0.75 16 45 H 0.06 0.79 8.14 -51.94 -0.42 0.36 16 46 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 47 H 0.17 1.99 3.98 -56.32 -0.22 1.76 16 48 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 49 H 0.11 0.77 8.14 -51.93 -0.42 0.35 16 50 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 LS Contribution 391.63 15.07 5.90 5.90 Total: -1.00 -30.41 391.63 -8.92 -39.32 By element: Atomic # 1 Polarization: 12.11 SS G_CDS: -8.34 Total: 3.77 kcal Atomic # 6 Polarization: 12.22 SS G_CDS: -0.56 Total: 11.66 kcal Atomic # 7 Polarization: -56.62 SS G_CDS: -0.69 Total: -57.31 kcal Atomic # 8 Polarization: -19.53 SS G_CDS: -0.19 Total: -19.73 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.03 Total: 16.38 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -30.41 -8.92 -39.32 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588124775.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.007 kcal (2) G-P(sol) polarization free energy of solvation -30.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.40 seconds