Wall clock time and date at job start Tue Mar 31 2020 23:41:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47080 * 2 1 4 4 H 1.08999 * 109.68225 * 60.47042 * 3 2 1 5 5 C 1.53301 * 109.71247 * 299.93751 * 3 2 1 6 6 O 1.42962 * 109.22113 * 187.95806 * 5 3 2 7 7 C 1.42962 * 114.16587 * 62.58004 * 6 5 3 8 8 C 1.53706 * 109.14820 * 297.28317 * 7 6 5 9 9 N 1.47150 * 109.68096 * 180.98970 * 3 2 1 10 10 C 1.34777 * 120.98424 * 350.27653 * 9 3 2 11 11 O 1.21344 * 119.99783 * 6.74848 * 10 9 3 12 12 C 1.49452 * 119.99875 * 186.75430 * 10 9 3 13 13 O 1.21348 * 120.00376 * 5.21472 * 12 10 9 14 14 N 1.34775 * 119.99480 * 185.21673 * 12 10 9 15 15 C 1.46503 * 119.99578 * 179.97438 * 14 12 10 16 16 C 1.53045 * 109.45882 * 205.00022 * 15 14 12 17 17 C 1.53189 * 109.31140 * 178.61834 * 16 15 14 18 18 N 1.46923 * 108.78087 * 54.63368 * 17 16 15 19 19 C 1.36933 * 120.63117 * 126.37006 * 18 17 16 20 20 H 1.07999 * 120.00336 * 340.06667 * 19 18 17 21 21 C 1.38811 * 119.99930 * 160.07127 * 19 18 17 22 22 N 1.31619 * 119.99815 * 331.40259 * 21 19 18 23 23 Si 1.86798 * 120.00141 * 151.40429 * 21 19 18 24 24 H 1.48501 * 109.47177 * 265.00649 * 23 21 19 25 25 H 1.48502 * 109.46985 * 25.00116 * 23 21 19 26 26 H 1.48500 * 109.47249 * 145.00570 * 23 21 19 27 27 C 1.46926 * 118.73760 * 306.64571 * 18 17 16 28 28 C 1.52759 * 109.00756 * 53.30368 * 27 18 17 29 29 H 1.08997 * 109.47036 * 65.91901 * 1 2 3 30 30 H 1.09001 * 109.46952 * 185.92331 * 1 2 3 31 31 H 1.09003 * 109.47400 * 305.91638 * 1 2 3 32 32 H 1.08995 * 109.46997 * 239.99592 * 2 1 3 33 33 H 1.09007 * 109.46794 * 119.99756 * 2 1 3 34 34 H 1.09002 * 109.51017 * 307.88188 * 5 3 2 35 35 H 1.09000 * 109.51006 * 67.98303 * 5 3 2 36 36 H 1.08995 * 109.51743 * 57.34512 * 7 6 5 37 37 H 1.09005 * 109.50712 * 177.44471 * 7 6 5 38 38 H 1.09004 * 109.84189 * 292.86372 * 8 7 6 39 39 H 1.09007 * 109.74684 * 172.16584 * 8 7 6 40 40 H 0.96993 * 120.00274 * 359.97438 * 14 12 10 41 41 H 1.08996 * 109.45326 * 324.96358 * 15 14 12 42 42 H 1.08996 * 109.49700 * 58.65946 * 16 15 14 43 43 H 1.08998 * 109.52117 * 298.57907 * 16 15 14 44 44 H 1.09006 * 109.58568 * 294.84533 * 17 16 15 45 45 H 1.09003 * 109.70315 * 174.49331 * 17 16 15 46 46 H 0.97003 * 119.99705 * 180.02562 * 22 21 19 47 47 H 1.08994 * 109.58628 * 173.14387 * 27 18 17 48 48 H 1.09008 * 109.58480 * 293.56876 * 27 18 17 49 49 H 1.09007 * 109.56606 * 185.55144 * 28 27 18 50 50 H 1.09000 * 109.38438 * 65.52146 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6854 1.9572 0.8930 5 6 1.5333 2.1700 -1.2506 6 8 2.1621 3.4510 -1.3371 7 6 3.5830 3.3967 -1.4853 8 6 4.1947 2.7330 -0.2411 9 7 3.5113 1.4479 -0.0239 10 6 4.2123 0.3105 0.1533 11 8 3.6348 -0.7550 0.2134 12 6 5.7009 0.3617 0.2758 13 8 6.2705 1.4327 0.3109 14 7 6.4108 -0.7817 0.3473 15 6 7.8701 -0.7316 0.4669 16 6 8.4713 -2.0281 -0.0807 17 6 9.9987 -1.9578 0.0141 18 7 10.3731 -1.6586 1.4030 19 6 11.2569 -2.4597 2.0754 20 1 11.4391 -3.4681 1.7343 21 6 11.9186 -1.9757 3.1955 22 7 12.1672 -0.6881 3.3079 23 14 12.4565 -3.1519 4.5434 24 1 11.4223 -3.1904 5.6085 25 1 12.6305 -4.5120 3.9732 26 1 13.7440 -2.6884 5.1202 27 6 9.7764 -0.4869 2.0587 28 6 8.2558 -0.5704 1.9391 29 1 -0.3633 0.4193 -0.9382 30 1 -0.3633 -1.0222 0.1061 31 1 -0.3634 0.6028 0.8323 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 1.7774 1.5840 -2.1367 35 1 0.4528 2.2977 -1.1848 36 1 3.8347 2.8152 -2.3722 37 1 3.9771 4.4077 -1.5888 38 1 4.0534 3.3754 0.6281 39 1 5.2590 2.5602 -0.4015 40 1 5.9556 -1.6377 0.3196 41 1 8.2521 0.1151 -0.1034 42 1 8.1768 -2.1540 -1.1226 43 1 8.1090 -2.8732 0.5045 44 1 10.3697 -1.1705 -0.6421 45 1 10.4296 -2.9141 -0.2826 46 1 12.6299 -0.3500 4.0905 47 1 10.0587 -0.4741 3.1113 48 1 10.1290 0.4229 1.5725 49 1 7.8079 0.3411 2.3348 50 1 7.8950 -1.4287 2.5058 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588125386.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:41:01 Heat of formation + Delta-G solvation = -62.306792 kcal Electronic energy + Delta-G solvation = -30929.534644 eV Core-core repulsion = 26765.756128 eV Total energy + Delta-G solvation = -4163.778516 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.37468 -39.62887 -38.42620 -37.53271 -35.57020 -34.78207 -34.05497 -32.21769 -30.26088 -30.16100 -29.64502 -28.00610 -25.99332 -25.17839 -24.01402 -22.42486 -22.38395 -22.03617 -21.12799 -20.14534 -19.23150 -17.80569 -17.16554 -16.90593 -16.70904 -16.20180 -16.10443 -15.56730 -15.29338 -15.10732 -14.79202 -14.63410 -14.29065 -13.89461 -13.76719 -13.61818 -13.45448 -13.33866 -13.10502 -12.88113 -12.70880 -12.51694 -12.31094 -12.01346 -11.70733 -11.57289 -11.28312 -11.14706 -11.03300 -10.93977 -10.74503 -10.62652 -10.54559 -10.47845 -10.30865 -10.15705 -9.80503 -9.70601 -9.11884 -8.89922 -8.79052 -8.42949 -6.87389 -5.86988 -3.15555 1.31692 2.11888 3.09811 3.28165 3.37592 3.46260 3.46833 3.47787 4.21828 4.33649 4.48074 4.53277 4.63578 4.69167 4.82370 4.97725 5.03719 5.14258 5.15441 5.25513 5.26461 5.36221 5.37396 5.39252 5.46698 5.49412 5.67474 5.70080 5.78859 5.87674 5.93877 5.95823 6.13653 6.18901 6.27014 6.30955 6.45412 6.55653 6.64270 6.68472 6.74284 6.81881 6.82763 7.22333 7.27668 7.54690 7.64606 7.77716 7.98653 8.33259 9.12999 9.80210 10.33212 11.22455 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.022488 B = 0.002380 C = 0.002300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.801060 B =11762.461436 C =12169.115859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.115 4.115 3 C 0.109 3.891 4 H 0.084 0.916 5 C 0.052 3.948 6 O -0.382 6.382 7 C 0.046 3.954 8 C 0.035 3.965 9 N -0.585 5.585 10 C 0.511 3.489 11 O -0.514 6.514 12 C 0.503 3.497 13 O -0.515 6.515 14 N -0.686 5.686 15 C 0.147 3.853 16 C -0.140 4.140 17 C 0.150 3.850 18 N -0.593 5.593 19 C -0.258 4.258 20 H 0.071 0.929 21 C 0.003 3.997 22 N -0.892 5.892 23 Si 0.892 3.108 24 H -0.288 1.288 25 H -0.279 1.279 26 H -0.293 1.293 27 C 0.170 3.830 28 C -0.146 4.146 29 H 0.052 0.948 30 H 0.060 0.940 31 H 0.054 0.946 32 H 0.075 0.925 33 H 0.092 0.908 34 H 0.056 0.944 35 H 0.107 0.893 36 H 0.055 0.945 37 H 0.109 0.891 38 H 0.078 0.922 39 H 0.154 0.846 40 H 0.408 0.592 41 H 0.087 0.913 42 H 0.058 0.942 43 H 0.067 0.933 44 H 0.021 0.979 45 H 0.061 0.939 46 H 0.254 0.746 47 H 0.092 0.908 48 H 0.021 0.979 49 H 0.055 0.945 50 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.863 5.174 -9.724 24.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.153 4.153 3 C 0.006 3.994 4 H 0.102 0.898 5 C -0.026 4.026 6 O -0.300 6.300 7 C -0.031 4.031 8 C -0.087 4.087 9 N -0.320 5.320 10 C 0.294 3.706 11 O -0.390 6.390 12 C 0.284 3.716 13 O -0.394 6.394 14 N -0.337 5.337 15 C 0.045 3.955 16 C -0.180 4.180 17 C 0.022 3.978 18 N -0.315 5.315 19 C -0.386 4.386 20 H 0.089 0.911 21 C -0.196 4.196 22 N -0.535 5.535 23 Si 0.722 3.278 24 H -0.215 1.215 25 H -0.204 1.204 26 H -0.219 1.219 27 C 0.043 3.957 28 C -0.187 4.187 29 H 0.071 0.929 30 H 0.079 0.921 31 H 0.073 0.927 32 H 0.094 0.906 33 H 0.110 0.890 34 H 0.075 0.925 35 H 0.125 0.875 36 H 0.073 0.927 37 H 0.127 0.873 38 H 0.096 0.904 39 H 0.170 0.830 40 H 0.244 0.756 41 H 0.105 0.895 42 H 0.077 0.923 43 H 0.085 0.915 44 H 0.039 0.961 45 H 0.079 0.921 46 H 0.064 0.936 47 H 0.110 0.890 48 H 0.039 0.961 49 H 0.074 0.926 50 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -21.720 5.601 -9.541 24.375 hybrid contribution 0.093 -1.027 0.838 1.329 sum -21.627 4.573 -8.703 23.757 Atomic orbital electron populations 1.21967 0.96201 1.02203 1.01478 1.22048 0.94375 0.93349 1.05484 1.22223 0.78751 0.98900 0.99519 0.89761 1.23114 0.98332 0.84770 0.96341 1.87959 1.20064 1.27985 1.94035 1.23169 0.80888 1.02329 0.96727 1.23715 1.02654 0.83544 0.98749 1.48029 1.06425 1.08079 1.69472 1.20303 0.88454 0.84054 0.77816 1.90783 1.70018 1.29318 1.48919 1.20127 0.87809 0.85220 0.78480 1.90475 1.71311 1.27995 1.49584 1.46230 1.08921 1.08299 1.70213 1.21269 0.75977 0.99749 0.98529 1.22366 0.99869 0.96175 0.99597 1.20814 0.90235 0.99052 0.87651 1.44195 1.49075 1.30388 1.07874 1.19192 1.17893 0.93544 1.08020 0.91131 1.24804 0.98155 0.95672 1.00987 1.70185 1.42118 1.12668 1.28570 0.86422 0.77489 0.80936 0.82985 1.21504 1.20371 1.21926 1.20711 0.86093 0.88492 1.00401 1.22494 1.01283 1.00893 0.93986 0.92884 0.92126 0.92705 0.90624 0.88981 0.92542 0.87492 0.92667 0.87335 0.90365 0.82959 0.75636 0.89456 0.92324 0.91462 0.96079 0.92074 0.93571 0.88979 0.96107 0.92624 0.92294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.11 9.40 37.16 0.35 -0.76 16 2 C -0.12 -1.08 3.89 -26.73 -0.10 -1.18 16 3 C 0.11 1.02 3.20 -67.42 -0.22 0.81 16 4 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 5 C 0.05 0.43 5.70 37.31 0.21 0.64 16 6 O -0.38 -3.76 10.74 -35.23 -0.38 -4.14 16 7 C 0.05 0.40 7.00 37.52 0.26 0.67 16 8 C 0.03 0.36 6.22 -3.31 -0.02 0.34 16 9 N -0.59 -6.54 3.01 -164.99 -0.50 -7.04 16 10 C 0.51 6.57 7.68 -11.58 -0.09 6.48 16 11 O -0.51 -6.98 12.03 5.50 0.07 -6.91 16 12 C 0.50 7.12 7.74 -11.58 -0.09 7.03 16 13 O -0.52 -8.10 12.80 5.50 0.07 -8.03 16 14 N -0.69 -9.55 5.07 -54.19 -0.27 -9.82 16 15 C 0.15 2.40 2.42 -67.89 -0.16 2.23 16 16 C -0.14 -2.21 5.55 -26.61 -0.15 -2.36 16 17 C 0.15 2.93 6.52 -3.71 -0.02 2.90 16 18 N -0.59 -14.29 3.02 -172.58 -0.52 -14.81 16 19 C -0.26 -6.89 9.59 -15.06 -0.14 -7.04 16 20 H 0.07 1.85 7.92 -52.49 -0.42 1.44 16 21 C 0.00 0.08 4.67 -17.43 -0.08 0.00 16 22 N -0.89 -25.59 11.42 55.49 0.63 -24.96 16 23 Si 0.89 21.35 29.64 -169.99 -5.04 16.31 16 24 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 25 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 26 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 27 C 0.17 3.96 5.44 -3.93 -0.02 3.93 16 28 C -0.15 -2.78 5.63 -26.84 -0.15 -2.93 16 29 H 0.05 0.31 6.97 -51.93 -0.36 -0.06 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 32 H 0.08 0.80 7.17 -51.93 -0.37 0.43 16 33 H 0.09 1.05 6.39 -51.92 -0.33 0.72 16 34 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 35 H 0.11 0.68 7.05 -51.93 -0.37 0.31 16 36 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.11 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.15 1.79 4.36 -54.73 -0.24 1.56 16 40 H 0.41 5.09 8.08 -40.82 -0.33 4.76 16 41 H 0.09 1.53 7.58 -51.93 -0.39 1.13 16 42 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 44 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 45 H 0.06 1.16 7.89 -51.93 -0.41 0.75 16 46 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 47 H 0.09 2.43 5.84 -51.93 -0.30 2.12 16 48 H 0.02 0.51 8.14 -51.92 -0.42 0.09 16 49 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 50 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 LS Contribution 383.13 15.07 5.77 5.77 Total: -1.00 -30.10 383.13 -8.75 -38.85 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: -8.15 Total: 4.02 kcal Atomic # 6 Polarization: 11.19 SS G_CDS: -0.43 Total: 10.76 kcal Atomic # 7 Polarization: -55.98 SS G_CDS: -0.66 Total: -56.64 kcal Atomic # 8 Polarization: -18.83 SS G_CDS: -0.24 Total: -19.07 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.04 Total: 16.31 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -30.10 -8.75 -38.85 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588125386.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.456 kcal (2) G-P(sol) polarization free energy of solvation -30.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds