Wall clock time and date at job start Tue Mar 31 2020 23:41:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47080 * 2 1 4 4 H 1.08999 * 109.68225 * 60.47042 * 3 2 1 5 5 C 1.53301 * 109.71247 * 299.93751 * 3 2 1 6 6 O 1.42962 * 109.22113 * 187.95806 * 5 3 2 7 7 C 1.42962 * 114.16587 * 62.58004 * 6 5 3 8 8 C 1.53706 * 109.14820 * 297.28317 * 7 6 5 9 9 N 1.47150 * 109.68096 * 180.98970 * 3 2 1 10 10 C 1.34777 * 120.98424 * 350.27653 * 9 3 2 11 11 O 1.21344 * 119.99783 * 6.74848 * 10 9 3 12 12 C 1.49452 * 119.99875 * 186.75430 * 10 9 3 13 13 O 1.21348 * 120.00376 * 5.21472 * 12 10 9 14 14 N 1.34775 * 119.99480 * 185.21673 * 12 10 9 15 15 C 1.46503 * 119.99578 * 179.97438 * 14 12 10 16 16 C 1.53045 * 109.45882 * 205.00022 * 15 14 12 17 17 C 1.53189 * 109.31140 * 178.61834 * 16 15 14 18 18 N 1.46923 * 108.78087 * 54.63368 * 17 16 15 19 19 C 1.36933 * 120.63117 * 126.37006 * 18 17 16 20 20 H 1.07999 * 120.00336 * 340.06667 * 19 18 17 21 21 C 1.38811 * 119.99930 * 160.07127 * 19 18 17 22 22 N 1.31619 * 119.99815 * 331.40259 * 21 19 18 23 23 Si 1.86798 * 120.00141 * 151.40429 * 21 19 18 24 24 H 1.48501 * 109.47177 * 265.00649 * 23 21 19 25 25 H 1.48502 * 109.46985 * 25.00116 * 23 21 19 26 26 H 1.48500 * 109.47249 * 145.00570 * 23 21 19 27 27 C 1.46926 * 118.73760 * 306.64571 * 18 17 16 28 28 C 1.52759 * 109.00756 * 53.30368 * 27 18 17 29 29 H 1.08997 * 109.47036 * 65.91901 * 1 2 3 30 30 H 1.09001 * 109.46952 * 185.92331 * 1 2 3 31 31 H 1.09003 * 109.47400 * 305.91638 * 1 2 3 32 32 H 1.08995 * 109.46997 * 239.99592 * 2 1 3 33 33 H 1.09007 * 109.46794 * 119.99756 * 2 1 3 34 34 H 1.09002 * 109.51017 * 307.88188 * 5 3 2 35 35 H 1.09000 * 109.51006 * 67.98303 * 5 3 2 36 36 H 1.08995 * 109.51743 * 57.34512 * 7 6 5 37 37 H 1.09005 * 109.50712 * 177.44471 * 7 6 5 38 38 H 1.09004 * 109.84189 * 292.86372 * 8 7 6 39 39 H 1.09007 * 109.74684 * 172.16584 * 8 7 6 40 40 H 0.96993 * 120.00274 * 359.97438 * 14 12 10 41 41 H 1.08996 * 109.45326 * 324.96358 * 15 14 12 42 42 H 1.08996 * 109.49700 * 58.65946 * 16 15 14 43 43 H 1.08998 * 109.52117 * 298.57907 * 16 15 14 44 44 H 1.09006 * 109.58568 * 294.84533 * 17 16 15 45 45 H 1.09003 * 109.70315 * 174.49331 * 17 16 15 46 46 H 0.97003 * 119.99705 * 180.02562 * 22 21 19 47 47 H 1.08994 * 109.58628 * 173.14387 * 27 18 17 48 48 H 1.09008 * 109.58480 * 293.56876 * 27 18 17 49 49 H 1.09007 * 109.56606 * 185.55144 * 28 27 18 50 50 H 1.09000 * 109.38438 * 65.52146 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6854 1.9572 0.8930 5 6 1.5333 2.1700 -1.2506 6 8 2.1621 3.4510 -1.3371 7 6 3.5830 3.3967 -1.4853 8 6 4.1947 2.7330 -0.2411 9 7 3.5113 1.4479 -0.0239 10 6 4.2123 0.3105 0.1533 11 8 3.6348 -0.7550 0.2134 12 6 5.7009 0.3617 0.2758 13 8 6.2705 1.4327 0.3109 14 7 6.4108 -0.7817 0.3473 15 6 7.8701 -0.7316 0.4669 16 6 8.4713 -2.0281 -0.0807 17 6 9.9987 -1.9578 0.0141 18 7 10.3731 -1.6586 1.4030 19 6 11.2569 -2.4597 2.0754 20 1 11.4391 -3.4681 1.7343 21 6 11.9186 -1.9757 3.1955 22 7 12.1672 -0.6881 3.3079 23 14 12.4565 -3.1519 4.5434 24 1 11.4223 -3.1904 5.6085 25 1 12.6305 -4.5120 3.9732 26 1 13.7440 -2.6884 5.1202 27 6 9.7764 -0.4869 2.0587 28 6 8.2558 -0.5704 1.9391 29 1 -0.3633 0.4193 -0.9382 30 1 -0.3633 -1.0222 0.1061 31 1 -0.3634 0.6028 0.8323 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 1.7774 1.5840 -2.1367 35 1 0.4528 2.2977 -1.1848 36 1 3.8347 2.8152 -2.3722 37 1 3.9771 4.4077 -1.5888 38 1 4.0534 3.3754 0.6281 39 1 5.2590 2.5602 -0.4015 40 1 5.9556 -1.6377 0.3196 41 1 8.2521 0.1151 -0.1034 42 1 8.1768 -2.1540 -1.1226 43 1 8.1090 -2.8732 0.5045 44 1 10.3697 -1.1705 -0.6421 45 1 10.4296 -2.9141 -0.2826 46 1 12.6299 -0.3500 4.0905 47 1 10.0587 -0.4741 3.1113 48 1 10.1290 0.4229 1.5725 49 1 7.8079 0.3411 2.3348 50 1 7.8950 -1.4287 2.5058 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588125386.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:41:00 Heat of formation + Delta-G solvation = -82.682023 kcal Electronic energy + Delta-G solvation = -30930.418181 eV Core-core repulsion = 26765.756128 eV Total energy + Delta-G solvation = -4164.662053 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 3.88 seconds Orbital eigenvalues (eV) -42.35368 -40.69955 -39.38833 -38.98691 -36.58905 -35.97208 -34.99674 -33.93993 -31.89350 -31.33456 -30.86092 -28.83929 -27.33677 -26.30176 -25.18850 -23.97800 -23.61812 -22.94355 -22.22880 -21.40076 -20.58647 -18.99424 -18.55851 -18.11771 -17.53565 -17.22288 -17.17287 -16.82790 -16.41340 -16.13381 -15.88591 -15.70494 -15.63095 -15.40244 -15.18677 -14.79583 -14.63951 -14.36703 -14.21945 -14.16188 -14.09934 -13.55280 -13.24566 -13.15410 -13.00525 -12.86976 -12.61191 -12.53689 -12.36031 -12.17088 -12.07593 -11.87214 -11.83183 -11.72451 -11.57822 -11.48245 -11.37180 -11.29167 -10.54818 -10.26659 -10.00337 -9.65285 -8.84756 -7.92750 -5.23042 0.24946 1.13013 1.46387 1.50049 1.58025 2.02528 2.27294 2.51911 2.80599 3.16499 3.22151 3.59759 3.64063 3.78674 3.80360 3.93334 3.97245 3.99189 4.12510 4.23930 4.27315 4.39553 4.42754 4.51888 4.56579 4.62874 4.66033 4.75994 4.76680 4.78575 4.83049 4.92996 4.98471 5.01859 5.08327 5.11489 5.23298 5.25607 5.28523 5.38659 5.44844 5.52551 5.60996 5.69422 5.86184 6.05313 6.14836 6.32142 6.63293 6.88577 7.10104 7.84557 8.33684 9.15529 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.022488 B = 0.002380 C = 0.002300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.801060 B =11762.461436 C =12169.115859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.107 4.107 3 C 0.106 3.894 4 H 0.089 0.911 5 C 0.054 3.946 6 O -0.393 6.393 7 C 0.050 3.950 8 C 0.035 3.965 9 N -0.583 5.583 10 C 0.512 3.488 11 O -0.523 6.523 12 C 0.502 3.498 13 O -0.533 6.533 14 N -0.679 5.679 15 C 0.160 3.840 16 C -0.125 4.125 17 C 0.143 3.857 18 N -0.610 5.610 19 C -0.262 4.262 20 H 0.075 0.925 21 C -0.051 4.051 22 N -0.928 5.928 23 Si 0.955 3.045 24 H -0.290 1.290 25 H -0.266 1.266 26 H -0.298 1.298 27 C 0.178 3.822 28 C -0.132 4.132 29 H 0.068 0.932 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.069 0.931 34 H 0.058 0.942 35 H 0.131 0.869 36 H 0.058 0.942 37 H 0.127 0.873 38 H 0.079 0.921 39 H 0.140 0.860 40 H 0.418 0.582 41 H 0.077 0.923 42 H 0.094 0.906 43 H 0.072 0.928 44 H 0.020 0.980 45 H 0.068 0.932 46 H 0.250 0.750 47 H 0.057 0.943 48 H -0.002 1.002 49 H 0.053 0.947 50 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.213 4.555 -10.918 26.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.145 4.145 3 C 0.004 3.996 4 H 0.107 0.893 5 C -0.023 4.023 6 O -0.311 6.311 7 C -0.027 4.027 8 C -0.086 4.086 9 N -0.317 5.317 10 C 0.294 3.706 11 O -0.401 6.401 12 C 0.283 3.717 13 O -0.412 6.412 14 N -0.330 5.330 15 C 0.056 3.944 16 C -0.164 4.164 17 C 0.017 3.983 18 N -0.333 5.333 19 C -0.391 4.391 20 H 0.093 0.907 21 C -0.247 4.247 22 N -0.574 5.574 23 Si 0.784 3.216 24 H -0.217 1.217 25 H -0.190 1.190 26 H -0.226 1.226 27 C 0.051 3.949 28 C -0.172 4.172 29 H 0.087 0.913 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.087 0.913 34 H 0.076 0.924 35 H 0.148 0.852 36 H 0.076 0.924 37 H 0.145 0.855 38 H 0.098 0.902 39 H 0.157 0.843 40 H 0.255 0.745 41 H 0.095 0.905 42 H 0.112 0.888 43 H 0.091 0.909 44 H 0.038 0.962 45 H 0.086 0.914 46 H 0.059 0.941 47 H 0.075 0.925 48 H 0.016 0.984 49 H 0.072 0.928 50 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -24.116 4.967 -10.768 26.873 hybrid contribution 0.807 -0.781 1.154 1.610 sum -23.309 4.185 -9.614 25.559 Atomic orbital electron populations 1.21925 0.94065 1.02628 1.02695 1.21885 0.96140 0.92819 1.03664 1.22411 0.77436 0.99215 1.00564 0.89266 1.23221 0.99474 0.84101 0.95524 1.87953 1.20399 1.28787 1.93965 1.23214 0.80521 1.03274 0.95730 1.23686 1.01986 0.83226 0.99751 1.48152 1.07361 1.07814 1.68385 1.20018 0.87676 0.84536 0.78323 1.90798 1.69850 1.29710 1.49698 1.20453 0.88572 0.84829 0.77814 1.90498 1.71948 1.28638 1.50083 1.45972 1.07776 1.08940 1.70278 1.20917 0.77476 0.99860 0.96130 1.22175 0.96636 0.95738 1.01876 1.21023 0.92950 0.99194 0.85121 1.44451 1.48895 1.30142 1.09856 1.19545 1.17401 0.93978 1.08222 0.90708 1.25532 0.99203 0.96985 1.02968 1.70306 1.43818 1.14414 1.28894 0.85423 0.76497 0.79512 0.80174 1.21686 1.19018 1.22555 1.20451 0.88837 0.87631 0.97989 1.22242 0.97867 1.00724 0.96344 0.91297 0.92094 0.91891 0.91941 0.91257 0.92401 0.85162 0.92384 0.85499 0.90241 0.84341 0.74458 0.90486 0.88773 0.90935 0.96233 0.91379 0.94122 0.92458 0.98443 0.92822 0.92372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.78 9.40 71.98 0.68 -1.10 16 2 C -0.11 -1.85 3.89 30.59 0.12 -1.73 16 3 C 0.11 1.80 3.20 44.97 0.14 1.94 16 4 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 5 C 0.05 0.76 5.70 72.08 0.41 1.17 16 6 O -0.39 -6.79 10.74 -148.98 -1.60 -8.39 16 7 C 0.05 0.77 7.00 72.22 0.51 1.28 16 8 C 0.03 0.68 6.22 86.49 0.54 1.21 16 9 N -0.58 -12.34 3.01 -794.27 -2.39 -14.74 16 10 C 0.51 12.67 7.68 87.27 0.67 13.34 16 11 O -0.52 -13.68 12.03 -3.23 -0.04 -13.71 16 12 C 0.50 13.76 7.74 87.27 0.68 14.44 16 13 O -0.53 -16.55 12.80 -3.24 -0.04 -16.59 16 14 N -0.68 -17.89 5.07 -443.74 -2.25 -20.14 16 15 C 0.16 5.03 2.42 45.02 0.11 5.14 16 16 C -0.12 -3.66 5.55 30.67 0.17 -3.48 16 17 C 0.14 5.44 6.52 86.36 0.56 6.01 16 18 N -0.61 -29.66 3.02 -699.93 -2.12 -31.77 16 19 C -0.26 -14.08 9.59 84.03 0.81 -13.27 16 20 H 0.08 3.88 7.92 -2.91 -0.02 3.86 16 21 C -0.05 -2.84 4.67 84.86 0.40 -2.45 16 22 N -0.93 -55.07 11.42 21.65 0.25 -54.82 16 23 Si 0.96 44.55 29.64 68.60 2.03 46.59 16 24 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 25 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 26 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16 27 C 0.18 8.55 5.44 86.22 0.47 9.02 16 28 C -0.13 -5.02 5.63 30.53 0.17 -4.85 16 29 H 0.07 0.58 6.97 -2.39 -0.02 0.56 16 30 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.06 1.24 7.17 -2.39 -0.02 1.23 16 33 H 0.07 1.53 6.39 -2.38 -0.02 1.51 16 34 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.13 1.21 7.05 -2.39 -0.02 1.19 16 36 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.13 1.49 8.14 -2.38 -0.02 1.47 16 38 H 0.08 1.53 8.14 -2.38 -0.02 1.51 16 39 H 0.14 3.19 4.36 -46.74 -0.20 2.99 16 40 H 0.42 9.57 8.08 -92.71 -0.75 8.83 16 41 H 0.08 2.64 7.58 -2.39 -0.02 2.62 16 42 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 43 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 44 H 0.02 0.76 8.14 -2.38 -0.02 0.74 16 45 H 0.07 2.48 7.89 -2.39 -0.02 2.46 16 46 H 0.25 14.37 8.31 -92.71 -0.77 13.60 16 47 H 0.06 3.16 5.84 -2.39 -0.01 3.14 16 48 H 0.00 -0.13 8.14 -2.38 -0.02 -0.15 16 49 H 0.05 2.04 8.14 -2.38 -0.02 2.03 16 50 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 Total: -1.00 -65.94 383.13 0.27 -65.68 By element: Atomic # 1 Polarization: 21.24 SS G_CDS: 0.00 Total: 21.24 kcal Atomic # 6 Polarization: 20.24 SS G_CDS: 6.42 Total: 26.66 kcal Atomic # 7 Polarization: -114.96 SS G_CDS: -6.51 Total: -121.48 kcal Atomic # 8 Polarization: -37.01 SS G_CDS: -1.68 Total: -38.70 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.59 kcal Total: -65.94 0.27 -65.68 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588125386.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.007 kcal (2) G-P(sol) polarization free energy of solvation -65.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.89 seconds