Wall clock time and date at job start Tue Mar 31 2020 23:41:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47245 * 2 1 4 4 H 1.09001 * 109.70291 * 298.19946 * 3 2 1 5 5 C 1.53286 * 109.68156 * 58.73503 * 3 2 1 6 6 O 1.42965 * 109.22413 * 172.02591 * 5 3 2 7 7 C 1.42967 * 114.16700 * 297.42636 * 6 5 3 8 8 C 1.52883 * 109.29787 * 62.44370 * 7 6 5 9 9 N 1.47146 * 108.60581 * 307.93548 * 8 7 6 10 10 C 1.34783 * 120.97818 * 230.49919 * 9 8 7 11 11 O 1.21351 * 119.99469 * 182.13175 * 10 9 8 12 12 C 1.49441 * 120.00232 * 2.13677 * 10 9 8 13 13 O 1.21355 * 120.00266 * 353.96670 * 12 10 9 14 14 N 1.34773 * 120.00024 * 174.24578 * 12 10 9 15 15 C 1.46502 * 120.00055 * 179.72182 * 14 12 10 16 16 C 1.53037 * 109.46087 * 275.02710 * 15 14 12 17 17 C 1.53194 * 109.31352 * 178.60035 * 16 15 14 18 18 N 1.46924 * 108.76681 * 54.65457 * 17 16 15 19 19 C 1.36933 * 120.63133 * 126.35925 * 18 17 16 20 20 H 1.07998 * 120.00104 * 187.44627 * 19 18 17 21 21 C 1.38818 * 120.00225 * 7.44988 * 19 18 17 22 22 N 1.31619 * 119.99739 * 35.50571 * 21 19 18 23 23 Si 1.86797 * 119.99867 * 215.51218 * 21 19 18 24 24 H 1.48499 * 109.47204 * 94.99781 * 23 21 19 25 25 H 1.48505 * 109.46752 * 214.99324 * 23 21 19 26 26 H 1.48493 * 109.47176 * 334.99355 * 23 21 19 27 27 C 1.46931 * 118.73881 * 306.38908 * 18 17 16 28 28 C 1.53040 * 109.46113 * 154.97272 * 15 14 12 29 29 H 1.08995 * 109.47251 * 294.95231 * 1 2 3 30 30 H 1.08997 * 109.46933 * 54.95895 * 1 2 3 31 31 H 1.09002 * 109.46820 * 174.94983 * 1 2 3 32 32 H 1.08999 * 109.47335 * 239.99541 * 2 1 3 33 33 H 1.08999 * 109.47084 * 119.99824 * 2 1 3 34 34 H 1.09001 * 109.51772 * 291.95380 * 5 3 2 35 35 H 1.09005 * 109.51356 * 52.05817 * 5 3 2 36 36 H 1.09002 * 109.51350 * 182.49940 * 7 6 5 37 37 H 1.09000 * 109.50871 * 302.64961 * 7 6 5 38 38 H 1.09005 * 109.61325 * 188.11581 * 8 7 6 39 39 H 1.08996 * 109.52394 * 67.70303 * 8 7 6 40 40 H 0.97002 * 120.00066 * 359.72277 * 14 12 10 41 41 H 1.08996 * 109.46009 * 34.99912 * 15 14 12 42 42 H 1.09000 * 109.49788 * 298.56394 * 16 15 14 43 43 H 1.09003 * 109.50131 * 58.66627 * 16 15 14 44 44 H 1.08999 * 109.59911 * 294.86861 * 17 16 15 45 45 H 1.08998 * 109.70284 * 174.50620 * 17 16 15 46 46 H 0.96996 * 120.00160 * 179.97438 * 22 21 19 47 47 H 1.09000 * 109.58543 * 293.81590 * 27 18 17 48 48 H 1.09002 * 109.70503 * 173.46153 * 27 18 17 49 49 H 1.09001 * 109.49771 * 301.34002 * 28 15 14 50 50 H 1.09001 * 109.49945 * 61.40149 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.7053 1.9506 -0.9044 5 6 1.5059 2.1789 1.2337 6 8 2.1327 3.4606 1.3249 7 6 3.5500 3.4075 1.5048 8 6 4.1885 2.7330 0.2904 9 7 3.5104 1.4483 0.0564 10 6 4.2151 0.3096 -0.0963 11 8 3.6397 -0.7336 -0.3270 12 6 5.7049 0.3317 0.0187 13 8 6.2886 1.3887 0.1400 14 7 6.4009 -0.8219 -0.0181 15 6 7.8618 -0.7997 0.0885 16 6 8.4703 -0.5585 -1.2948 17 6 9.9964 -0.5011 -1.1740 18 7 10.4649 -1.7276 -0.5147 19 6 11.4294 -2.5072 -1.0953 20 1 11.6807 -3.4653 -0.6650 21 6 12.0842 -2.0659 -2.2370 22 7 12.3536 -0.7864 -2.3881 23 14 12.5828 -3.2879 -3.5589 24 1 11.5338 -3.3368 -4.6088 25 1 13.8704 -2.8634 -4.1650 26 1 12.7408 -4.6347 -2.9537 27 6 9.8782 -2.1023 0.7793 28 6 8.3535 -2.1413 0.6366 29 1 -0.3633 0.4335 0.9317 30 1 -0.3633 0.5900 -0.8414 31 1 -0.3633 -1.0237 -0.0905 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 0.4272 2.3068 1.1428 35 1 1.7296 1.5990 2.1292 36 1 3.9419 4.4193 1.6089 37 1 3.7819 2.8325 2.4013 38 1 5.2474 2.5596 0.4828 39 1 4.0739 3.3734 -0.5841 40 1 5.9344 -1.6668 -0.1151 41 1 8.1646 0.0011 0.7630 42 1 8.1885 -1.3720 -1.9632 43 1 8.1016 0.3861 -1.6949 44 1 10.2838 0.3660 -0.5793 45 1 10.4411 -0.4271 -2.1664 46 1 12.8115 -0.4781 -3.1856 47 1 10.1559 -1.3658 1.5333 48 1 10.2427 -3.0854 1.0772 49 1 7.9014 -2.3237 1.6116 50 1 8.0722 -2.9399 -0.0498 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588125387.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:41:05 Heat of formation + Delta-G solvation = -55.050138 kcal Electronic energy + Delta-G solvation = -30985.729894 eV Core-core repulsion = 26822.266050 eV Total energy + Delta-G solvation = -4163.463844 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -41.39188 -39.63849 -38.43513 -37.56243 -35.56906 -34.82299 -34.05651 -32.26177 -30.27781 -30.17019 -29.63419 -28.00497 -26.01460 -25.20205 -24.03498 -22.41351 -22.38815 -22.02746 -21.10804 -20.17980 -19.23302 -17.83619 -17.20407 -16.92777 -16.71729 -16.17023 -16.11687 -15.55773 -15.27393 -15.11030 -14.80772 -14.70010 -14.27211 -13.92574 -13.78496 -13.59396 -13.46058 -13.30524 -13.13687 -12.91120 -12.70024 -12.55053 -12.28955 -12.06090 -11.69283 -11.60714 -11.30393 -11.11413 -11.07671 -10.96221 -10.72210 -10.55786 -10.52386 -10.45120 -10.33418 -10.15348 -9.84007 -9.65201 -9.04912 -8.89924 -8.83417 -8.33186 -6.99874 -5.91736 -3.06982 1.30915 2.11595 3.09747 3.27259 3.38762 3.48833 3.48971 3.49668 4.19785 4.35382 4.48294 4.54066 4.64176 4.73527 4.83209 4.99530 5.03866 5.12886 5.15165 5.19850 5.26608 5.36491 5.38765 5.39868 5.47469 5.50069 5.66924 5.69681 5.78583 5.87360 5.93426 5.95529 6.11993 6.20743 6.28023 6.32417 6.45017 6.53548 6.62635 6.69351 6.76441 6.78383 6.83473 7.21686 7.30721 7.61439 7.65144 7.77396 7.98077 8.28599 9.10332 9.80168 10.29315 11.17164 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.021946 B = 0.002426 C = 0.002341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.554576 B =11537.867492 C =11955.390133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.119 4.119 3 C 0.108 3.892 4 H 0.084 0.916 5 C 0.052 3.948 6 O -0.383 6.383 7 C 0.048 3.952 8 C 0.017 3.983 9 N -0.583 5.583 10 C 0.511 3.489 11 O -0.515 6.515 12 C 0.505 3.495 13 O -0.514 6.514 14 N -0.685 5.685 15 C 0.146 3.854 16 C -0.144 4.144 17 C 0.151 3.849 18 N -0.595 5.595 19 C -0.255 4.255 20 H 0.077 0.923 21 C 0.001 3.999 22 N -0.885 5.885 23 Si 0.882 3.118 24 H -0.288 1.288 25 H -0.294 1.294 26 H -0.279 1.279 27 C 0.151 3.849 28 C -0.140 4.140 29 H 0.052 0.948 30 H 0.054 0.946 31 H 0.060 0.940 32 H 0.099 0.901 33 H 0.070 0.930 34 H 0.107 0.893 35 H 0.056 0.944 36 H 0.109 0.891 37 H 0.054 0.946 38 H 0.168 0.832 39 H 0.075 0.925 40 H 0.408 0.592 41 H 0.087 0.913 42 H 0.059 0.941 43 H 0.055 0.945 44 H 0.016 0.984 45 H 0.114 0.886 46 H 0.255 0.745 47 H 0.021 0.979 48 H 0.061 0.939 49 H 0.058 0.942 50 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.299 5.300 7.578 24.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.157 4.157 3 C 0.005 3.995 4 H 0.102 0.898 5 C -0.025 4.025 6 O -0.301 6.301 7 C -0.029 4.029 8 C -0.104 4.104 9 N -0.317 5.317 10 C 0.294 3.706 11 O -0.391 6.391 12 C 0.286 3.714 13 O -0.393 6.393 14 N -0.335 5.335 15 C 0.044 3.956 16 C -0.185 4.185 17 C 0.025 3.975 18 N -0.318 5.318 19 C -0.383 4.383 20 H 0.095 0.905 21 C -0.198 4.198 22 N -0.529 5.529 23 Si 0.711 3.289 24 H -0.216 1.216 25 H -0.221 1.221 26 H -0.204 1.204 27 C 0.024 3.976 28 C -0.180 4.180 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.117 0.883 33 H 0.089 0.911 34 H 0.125 0.875 35 H 0.074 0.926 36 H 0.127 0.873 37 H 0.073 0.927 38 H 0.184 0.816 39 H 0.094 0.906 40 H 0.244 0.756 41 H 0.105 0.895 42 H 0.077 0.923 43 H 0.074 0.926 44 H 0.034 0.966 45 H 0.131 0.869 46 H 0.065 0.935 47 H 0.039 0.961 48 H 0.080 0.920 49 H 0.077 0.923 50 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -22.146 5.714 7.420 24.045 hybrid contribution 0.002 -1.048 -0.825 1.333 sum -22.144 4.666 6.596 23.572 Atomic orbital electron populations 1.21952 0.96128 1.02198 1.01476 1.22081 0.94511 0.93488 1.05612 1.22210 0.78841 0.98832 0.99569 0.89761 1.23110 0.98242 0.84761 0.96432 1.87961 1.20552 1.27908 1.93710 1.22987 0.80803 1.02262 0.96884 1.23896 1.04082 0.83469 0.98967 1.48039 1.06459 1.07944 1.69289 1.20253 0.88367 0.83833 0.78141 1.90767 1.70058 1.31088 1.47229 1.20144 0.87929 0.85062 0.78283 1.90312 1.70297 1.28894 1.49748 1.46235 1.08920 1.08482 1.69833 1.21305 0.75708 0.99422 0.99209 1.22530 1.00432 1.00689 0.94800 1.21213 0.87795 0.86961 1.01517 1.44338 1.42950 1.26100 1.18370 1.19247 1.14059 0.98109 1.06877 0.90523 1.24616 0.98964 0.95588 1.00582 1.70216 1.41017 1.14125 1.27553 0.86549 0.77232 0.81750 0.83357 1.21569 1.22085 1.20440 1.20783 0.89391 0.98819 0.88629 1.22368 0.99949 0.95743 0.99970 0.92930 0.92657 0.92130 0.88252 0.91150 0.87498 0.92598 0.87344 0.92744 0.81597 0.90636 0.75576 0.89472 0.92264 0.92645 0.96553 0.86895 0.93495 0.96090 0.92044 0.92318 0.91374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.11 9.39 37.16 0.35 -0.76 16 2 C -0.12 -1.13 3.92 -26.73 -0.10 -1.23 16 3 C 0.11 1.03 3.23 -67.43 -0.22 0.82 16 4 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 5 C 0.05 0.44 5.65 37.31 0.21 0.65 16 6 O -0.38 -3.86 10.74 -35.23 -0.38 -4.24 16 7 C 0.05 0.43 6.97 37.10 0.26 0.69 16 8 C 0.02 0.18 6.38 -3.75 -0.02 0.15 16 9 N -0.58 -6.60 3.03 -165.51 -0.50 -7.10 16 10 C 0.51 6.62 7.63 -11.59 -0.09 6.53 16 11 O -0.52 -7.05 12.15 5.50 0.07 -6.98 16 12 C 0.50 7.13 7.78 -11.59 -0.09 7.04 16 13 O -0.51 -7.99 12.70 5.49 0.07 -7.92 16 14 N -0.68 -9.51 5.07 -54.20 -0.27 -9.79 16 15 C 0.15 2.37 2.42 -67.89 -0.16 2.20 16 16 C -0.14 -2.75 5.65 -26.61 -0.15 -2.90 16 17 C 0.15 3.53 5.73 -3.71 -0.02 3.51 16 18 N -0.60 -14.24 3.03 -172.32 -0.52 -14.76 16 19 C -0.25 -6.78 9.65 -15.06 -0.15 -6.92 16 20 H 0.08 2.00 7.91 -52.49 -0.42 1.58 16 21 C 0.00 0.02 4.71 -17.43 -0.08 -0.07 16 22 N -0.88 -25.11 11.05 55.49 0.61 -24.49 16 23 Si 0.88 21.16 29.67 -169.99 -5.04 16.12 16 24 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 25 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 26 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 27 C 0.15 2.91 6.51 -3.71 -0.02 2.89 16 28 C -0.14 -2.20 5.55 -26.61 -0.15 -2.35 16 29 H 0.05 0.31 6.90 -51.93 -0.36 -0.05 16 30 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.10 1.14 6.20 -51.93 -0.32 0.82 16 33 H 0.07 0.75 7.35 -51.93 -0.38 0.36 16 34 H 0.11 0.70 7.02 -51.93 -0.36 0.33 16 35 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.11 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.17 2.00 3.93 -56.47 -0.22 1.78 16 39 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 40 H 0.41 5.10 8.09 -40.82 -0.33 4.77 16 41 H 0.09 1.51 7.58 -51.93 -0.39 1.12 16 42 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 43 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 44 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 45 H 0.11 2.99 5.14 -51.93 -0.27 2.72 16 46 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 47 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 48 H 0.06 1.14 7.86 -51.93 -0.41 0.73 16 49 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 50 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 382.05 15.07 5.76 5.76 Total: -1.00 -29.67 382.05 -8.75 -38.42 By element: Atomic # 1 Polarization: 12.83 SS G_CDS: -8.09 Total: 4.73 kcal Atomic # 6 Polarization: 10.69 SS G_CDS: -0.44 Total: 10.24 kcal Atomic # 7 Polarization: -55.45 SS G_CDS: -0.68 Total: -56.14 kcal Atomic # 8 Polarization: -18.89 SS G_CDS: -0.24 Total: -19.14 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.04 Total: 16.12 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -29.67 -8.75 -38.42 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588125387.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.632 kcal (2) G-P(sol) polarization free energy of solvation -29.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds