Wall clock time and date at job start Tue Mar 31 2020 23:41:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47245 * 2 1 4 4 H 1.09001 * 109.70291 * 298.19946 * 3 2 1 5 5 C 1.53286 * 109.68156 * 58.73503 * 3 2 1 6 6 O 1.42965 * 109.22413 * 172.02591 * 5 3 2 7 7 C 1.42967 * 114.16700 * 297.42636 * 6 5 3 8 8 C 1.52883 * 109.29787 * 62.44370 * 7 6 5 9 9 N 1.47146 * 108.60581 * 307.93548 * 8 7 6 10 10 C 1.34783 * 120.97818 * 230.49919 * 9 8 7 11 11 O 1.21351 * 119.99469 * 182.13175 * 10 9 8 12 12 C 1.49441 * 120.00232 * 2.13677 * 10 9 8 13 13 O 1.21355 * 120.00266 * 353.96670 * 12 10 9 14 14 N 1.34773 * 120.00024 * 174.24578 * 12 10 9 15 15 C 1.46502 * 120.00055 * 179.72182 * 14 12 10 16 16 C 1.53037 * 109.46087 * 275.02710 * 15 14 12 17 17 C 1.53194 * 109.31352 * 178.60035 * 16 15 14 18 18 N 1.46924 * 108.76681 * 54.65457 * 17 16 15 19 19 C 1.36933 * 120.63133 * 126.35925 * 18 17 16 20 20 H 1.07998 * 120.00104 * 187.44627 * 19 18 17 21 21 C 1.38818 * 120.00225 * 7.44988 * 19 18 17 22 22 N 1.31619 * 119.99739 * 35.50571 * 21 19 18 23 23 Si 1.86797 * 119.99867 * 215.51218 * 21 19 18 24 24 H 1.48499 * 109.47204 * 94.99781 * 23 21 19 25 25 H 1.48505 * 109.46752 * 214.99324 * 23 21 19 26 26 H 1.48493 * 109.47176 * 334.99355 * 23 21 19 27 27 C 1.46931 * 118.73881 * 306.38908 * 18 17 16 28 28 C 1.53040 * 109.46113 * 154.97272 * 15 14 12 29 29 H 1.08995 * 109.47251 * 294.95231 * 1 2 3 30 30 H 1.08997 * 109.46933 * 54.95895 * 1 2 3 31 31 H 1.09002 * 109.46820 * 174.94983 * 1 2 3 32 32 H 1.08999 * 109.47335 * 239.99541 * 2 1 3 33 33 H 1.08999 * 109.47084 * 119.99824 * 2 1 3 34 34 H 1.09001 * 109.51772 * 291.95380 * 5 3 2 35 35 H 1.09005 * 109.51356 * 52.05817 * 5 3 2 36 36 H 1.09002 * 109.51350 * 182.49940 * 7 6 5 37 37 H 1.09000 * 109.50871 * 302.64961 * 7 6 5 38 38 H 1.09005 * 109.61325 * 188.11581 * 8 7 6 39 39 H 1.08996 * 109.52394 * 67.70303 * 8 7 6 40 40 H 0.97002 * 120.00066 * 359.72277 * 14 12 10 41 41 H 1.08996 * 109.46009 * 34.99912 * 15 14 12 42 42 H 1.09000 * 109.49788 * 298.56394 * 16 15 14 43 43 H 1.09003 * 109.50131 * 58.66627 * 16 15 14 44 44 H 1.08999 * 109.59911 * 294.86861 * 17 16 15 45 45 H 1.08998 * 109.70284 * 174.50620 * 17 16 15 46 46 H 0.96996 * 120.00160 * 179.97438 * 22 21 19 47 47 H 1.09000 * 109.58543 * 293.81590 * 27 18 17 48 48 H 1.09002 * 109.70503 * 173.46153 * 27 18 17 49 49 H 1.09001 * 109.49771 * 301.34002 * 28 15 14 50 50 H 1.09001 * 109.49945 * 61.40149 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.7053 1.9506 -0.9044 5 6 1.5059 2.1789 1.2337 6 8 2.1327 3.4606 1.3249 7 6 3.5500 3.4075 1.5048 8 6 4.1885 2.7330 0.2904 9 7 3.5104 1.4483 0.0564 10 6 4.2151 0.3096 -0.0963 11 8 3.6397 -0.7336 -0.3270 12 6 5.7049 0.3317 0.0187 13 8 6.2886 1.3887 0.1400 14 7 6.4009 -0.8219 -0.0181 15 6 7.8618 -0.7997 0.0885 16 6 8.4703 -0.5585 -1.2948 17 6 9.9964 -0.5011 -1.1740 18 7 10.4649 -1.7276 -0.5147 19 6 11.4294 -2.5072 -1.0953 20 1 11.6807 -3.4653 -0.6650 21 6 12.0842 -2.0659 -2.2370 22 7 12.3536 -0.7864 -2.3881 23 14 12.5828 -3.2879 -3.5589 24 1 11.5338 -3.3368 -4.6088 25 1 13.8704 -2.8634 -4.1650 26 1 12.7408 -4.6347 -2.9537 27 6 9.8782 -2.1023 0.7793 28 6 8.3535 -2.1413 0.6366 29 1 -0.3633 0.4335 0.9317 30 1 -0.3633 0.5900 -0.8414 31 1 -0.3633 -1.0237 -0.0905 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 0.4272 2.3068 1.1428 35 1 1.7296 1.5990 2.1292 36 1 3.9419 4.4193 1.6089 37 1 3.7819 2.8325 2.4013 38 1 5.2474 2.5596 0.4828 39 1 4.0739 3.3734 -0.5841 40 1 5.9344 -1.6668 -0.1151 41 1 8.1646 0.0011 0.7630 42 1 8.1885 -1.3720 -1.9632 43 1 8.1016 0.3861 -1.6949 44 1 10.2838 0.3660 -0.5793 45 1 10.4411 -0.4271 -2.1664 46 1 12.8115 -0.4781 -3.1856 47 1 10.1559 -1.3658 1.5333 48 1 10.2427 -3.0854 1.0772 49 1 7.9014 -2.3237 1.6116 50 1 8.0722 -2.9399 -0.0498 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588125387.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:41:04 Heat of formation + Delta-G solvation = -75.030404 kcal Electronic energy + Delta-G solvation = -30986.596304 eV Core-core repulsion = 26822.266050 eV Total energy + Delta-G solvation = -4164.330254 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -42.37693 -40.70511 -39.40109 -39.01052 -36.61079 -35.99370 -35.00290 -33.96138 -31.88895 -31.30948 -30.89139 -28.84620 -27.35887 -26.32098 -25.20221 -23.97987 -23.59978 -22.93294 -22.22053 -21.40689 -20.59052 -19.02381 -18.60951 -18.16611 -17.49792 -17.24429 -17.15735 -16.82292 -16.39963 -16.12519 -15.89144 -15.77401 -15.65753 -15.37509 -15.15516 -14.81051 -14.70224 -14.34756 -14.20397 -14.16457 -14.14068 -13.58026 -13.28280 -13.17333 -12.99098 -12.89520 -12.58677 -12.51765 -12.35910 -12.16567 -12.09302 -11.83991 -11.80614 -11.79217 -11.57597 -11.38787 -11.35080 -11.30120 -10.48009 -10.21358 -9.92234 -9.70169 -8.94863 -7.95455 -5.11881 0.23983 1.12223 1.46581 1.52125 1.58984 2.02269 2.26420 2.52754 2.80745 3.12370 3.18025 3.60870 3.64420 3.79057 3.80494 3.93879 3.98575 4.00870 4.11478 4.24850 4.27858 4.38088 4.43501 4.51468 4.54931 4.62858 4.65158 4.75973 4.76960 4.78109 4.83582 4.93491 4.98847 5.02852 5.07800 5.11023 5.21473 5.26209 5.28434 5.42375 5.51483 5.54002 5.63635 5.73956 5.87051 6.05447 6.13934 6.29871 6.63994 6.88476 7.09042 7.86324 8.32001 9.12506 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.021946 B = 0.002426 C = 0.002341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.554576 B =11537.867492 C =11955.390133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.112 4.112 3 C 0.105 3.895 4 H 0.089 0.911 5 C 0.054 3.946 6 O -0.393 6.393 7 C 0.051 3.949 8 C 0.017 3.983 9 N -0.581 5.581 10 C 0.512 3.488 11 O -0.525 6.525 12 C 0.504 3.496 13 O -0.530 6.530 14 N -0.677 5.677 15 C 0.159 3.841 16 C -0.130 4.130 17 C 0.157 3.843 18 N -0.612 5.612 19 C -0.259 4.259 20 H 0.081 0.919 21 C -0.052 4.052 22 N -0.920 5.920 23 Si 0.944 3.056 24 H -0.291 1.291 25 H -0.300 1.300 26 H -0.268 1.268 27 C 0.144 3.856 28 C -0.126 4.126 29 H 0.067 0.933 30 H 0.063 0.937 31 H 0.060 0.940 32 H 0.076 0.924 33 H 0.057 0.943 34 H 0.131 0.869 35 H 0.057 0.943 36 H 0.127 0.873 37 H 0.055 0.945 38 H 0.154 0.846 39 H 0.078 0.922 40 H 0.418 0.582 41 H 0.078 0.922 42 H 0.055 0.945 43 H 0.053 0.947 44 H -0.004 1.004 45 H 0.080 0.920 46 H 0.251 0.749 47 H 0.022 0.978 48 H 0.069 0.931 49 H 0.094 0.906 50 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.768 4.732 8.564 26.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.149 4.149 3 C 0.003 3.997 4 H 0.107 0.893 5 C -0.023 4.023 6 O -0.312 6.312 7 C -0.026 4.026 8 C -0.104 4.104 9 N -0.315 5.315 10 C 0.294 3.706 11 O -0.402 6.402 12 C 0.285 3.715 13 O -0.409 6.409 14 N -0.328 5.328 15 C 0.055 3.945 16 C -0.170 4.170 17 C 0.030 3.970 18 N -0.335 5.335 19 C -0.388 4.388 20 H 0.098 0.902 21 C -0.247 4.247 22 N -0.567 5.567 23 Si 0.773 3.227 24 H -0.219 1.219 25 H -0.228 1.228 26 H -0.192 1.192 27 C 0.018 3.982 28 C -0.165 4.165 29 H 0.086 0.914 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.095 0.905 33 H 0.076 0.924 34 H 0.149 0.851 35 H 0.075 0.925 36 H 0.145 0.855 37 H 0.074 0.926 38 H 0.170 0.830 39 H 0.097 0.903 40 H 0.256 0.744 41 H 0.096 0.904 42 H 0.074 0.926 43 H 0.071 0.929 44 H 0.014 0.986 45 H 0.098 0.902 46 H 0.060 0.940 47 H 0.040 0.960 48 H 0.088 0.912 49 H 0.113 0.887 50 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -24.661 5.130 8.434 26.563 hybrid contribution 0.755 -0.813 -1.072 1.543 sum -23.906 4.318 7.361 25.384 Atomic orbital electron populations 1.21911 0.93976 1.02660 1.02675 1.21919 0.96292 0.92918 1.03815 1.22396 0.77539 0.99187 1.00557 0.89281 1.23222 0.99367 0.84070 0.95678 1.87954 1.20832 1.28739 1.93651 1.23029 0.80481 1.03171 0.95938 1.23848 1.03405 0.83205 0.99929 1.48159 1.07390 1.07665 1.68243 1.19995 0.87650 0.84309 0.78601 1.90784 1.69920 1.31514 1.47999 1.20454 0.88658 0.84697 0.77648 1.90346 1.70944 1.29468 1.50147 1.45983 1.07774 1.09099 1.69963 1.20953 0.76979 0.99645 0.96900 1.22281 0.97486 1.00433 0.96815 1.20973 0.90353 0.86381 0.99276 1.44595 1.42738 1.25939 1.20226 1.19586 1.13831 0.98330 1.07052 0.90165 1.25281 1.00192 0.96919 1.02313 1.70328 1.42763 1.15780 1.27779 0.85566 0.76244 0.80143 0.80702 1.21888 1.22789 1.19215 1.21011 0.91591 0.99076 0.86535 1.22184 0.97120 0.95199 1.02008 0.91383 0.91822 0.92051 0.90508 0.92432 0.85144 0.92470 0.85537 0.92628 0.82988 0.90330 0.74445 0.90352 0.92645 0.92870 0.98594 0.90210 0.94012 0.95963 0.91247 0.88721 0.91026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.78 9.39 71.98 0.68 -1.10 16 2 C -0.11 -1.94 3.92 30.59 0.12 -1.82 16 3 C 0.11 1.82 3.23 44.96 0.15 1.96 16 4 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 5 C 0.05 0.77 5.65 72.08 0.41 1.18 16 6 O -0.39 -7.00 10.74 -148.98 -1.60 -8.60 16 7 C 0.05 0.83 6.97 71.94 0.50 1.33 16 8 C 0.02 0.34 6.38 86.22 0.55 0.89 16 9 N -0.58 -12.45 3.03 -795.91 -2.41 -14.86 16 10 C 0.51 12.76 7.63 87.26 0.67 13.43 16 11 O -0.52 -13.86 12.15 -3.25 -0.04 -13.90 16 12 C 0.50 13.77 7.78 87.27 0.68 14.45 16 13 O -0.53 -16.24 12.70 -3.26 -0.04 -16.28 16 14 N -0.68 -17.84 5.07 -443.75 -2.25 -20.09 16 15 C 0.16 4.97 2.42 45.02 0.11 5.08 16 16 C -0.13 -4.98 5.65 30.67 0.17 -4.81 16 17 C 0.16 7.52 5.73 86.36 0.49 8.01 16 18 N -0.61 -29.42 3.03 -699.09 -2.12 -31.54 16 19 C -0.26 -13.82 9.65 84.04 0.81 -13.01 16 20 H 0.08 4.14 7.91 -2.91 -0.02 4.11 16 21 C -0.05 -2.86 4.71 84.86 0.40 -2.46 16 22 N -0.92 -53.89 11.05 21.65 0.24 -53.65 16 23 Si 0.94 44.23 29.67 68.60 2.04 46.26 16 24 H -0.29 -13.66 7.11 99.48 0.71 -12.96 16 25 H -0.30 -14.28 7.11 99.48 0.71 -13.57 16 26 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 27 C 0.14 5.36 6.51 86.36 0.56 5.93 16 28 C -0.13 -3.65 5.55 30.67 0.17 -3.48 16 29 H 0.07 0.58 6.90 -2.39 -0.02 0.57 16 30 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.08 1.70 6.20 -2.39 -0.01 1.69 16 33 H 0.06 1.15 7.35 -2.39 -0.02 1.13 16 34 H 0.13 1.25 7.02 -2.39 -0.02 1.24 16 35 H 0.06 0.82 8.14 -2.38 -0.02 0.80 16 36 H 0.13 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.15 3.58 3.93 -74.40 -0.29 3.29 16 39 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 40 H 0.42 9.61 8.09 -92.71 -0.75 8.86 16 41 H 0.08 2.65 7.58 -2.39 -0.02 2.63 16 42 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 43 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 44 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 45 H 0.08 4.41 5.14 -2.39 -0.01 4.40 16 46 H 0.25 14.23 8.31 -92.71 -0.77 13.46 16 47 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 48 H 0.07 2.46 7.86 -2.39 -0.02 2.44 16 49 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 50 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 Total: -1.00 -64.76 382.05 0.20 -64.56 By element: Atomic # 1 Polarization: 22.61 SS G_CDS: -0.08 Total: 22.53 kcal Atomic # 6 Polarization: 19.10 SS G_CDS: 6.46 Total: 25.57 kcal Atomic # 7 Polarization: -113.61 SS G_CDS: -6.54 Total: -120.14 kcal Atomic # 8 Polarization: -37.10 SS G_CDS: -1.68 Total: -38.78 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.04 Total: 46.26 kcal Total: -64.76 0.20 -64.56 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588125387.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.466 kcal (2) G-P(sol) polarization free energy of solvation -64.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds