Wall clock time and date at job start Tue Mar 31 2020 22:31:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46666 * 2 1 4 4 C 1.52999 * 109.47060 * 240.00512 * 2 1 3 5 5 N 1.46497 * 109.47308 * 119.99701 * 2 1 3 6 6 C 1.46864 * 124.33995 * 179.97438 * 5 2 1 7 7 C 1.54482 * 105.42562 * 197.02332 * 6 5 2 8 8 H 1.08994 * 110.97215 * 216.44298 * 7 6 5 9 9 N 1.46505 * 110.96398 * 92.71753 * 7 6 5 10 10 C 1.34775 * 119.99597 * 158.08824 * 9 7 6 11 11 O 1.21590 * 120.00259 * 0.02562 * 10 9 7 12 12 N 1.34784 * 120.00087 * 179.97438 * 10 9 7 13 13 C 1.47026 * 125.64269 * 359.96001 * 12 10 9 14 14 C 1.54368 * 107.28351 * 181.12378 * 13 12 10 15 15 C 1.55164 * 102.92138 * 22.14379 * 14 13 12 16 16 O 1.42892 * 111.00411 * 82.63505 * 15 14 13 17 17 C 1.50695 * 111.00114 * 206.45086 * 15 14 13 18 18 H 1.08004 * 120.00546 * 357.09469 * 17 15 14 19 19 C 1.37885 * 119.99721 * 176.81720 * 17 15 14 20 20 N 1.31514 * 120.00035 * 0.02562 * 19 17 15 21 21 Si 1.86803 * 119.99853 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.46986 * 90.00256 * 21 19 17 23 23 H 1.48496 * 109.47029 * 210.00273 * 21 19 17 24 24 H 1.48499 * 109.47352 * 330.00102 * 21 19 17 25 25 C 1.47417 * 125.64902 * 180.02562 * 12 10 9 26 26 C 1.54633 * 101.79837 * 334.58501 * 7 6 5 27 27 C 1.34424 * 124.34950 * 359.97438 * 5 2 1 28 28 O 1.21277 * 124.93833 * 359.61621 * 27 5 2 29 29 H 1.09007 * 109.47002 * 299.99673 * 1 2 3 30 30 H 1.08997 * 109.47192 * 59.99950 * 1 2 3 31 31 H 1.08999 * 109.47074 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47163 * 179.97438 * 3 2 1 33 33 H 1.08997 * 109.47356 * 299.99950 * 3 2 1 34 34 H 1.09007 * 109.47143 * 60.00413 * 3 2 1 35 35 H 1.08999 * 109.46735 * 299.99666 * 4 2 1 36 36 H 1.08997 * 109.47495 * 59.99724 * 4 2 1 37 37 H 1.09002 * 109.46700 * 179.97438 * 4 2 1 38 38 H 1.09004 * 110.25503 * 78.05246 * 6 5 2 39 39 H 1.08999 * 110.28331 * 316.02141 * 6 5 2 40 40 H 0.96999 * 120.00238 * 338.09102 * 9 7 6 41 41 H 1.08999 * 109.88378 * 300.51108 * 13 12 10 42 42 H 1.09006 * 109.88004 * 61.52649 * 13 12 10 43 43 H 1.08997 * 110.70762 * 263.79435 * 14 13 12 44 44 H 1.09008 * 110.75448 * 140.50749 * 14 13 12 45 45 H 0.96704 * 113.99940 * 183.18128 * 16 15 14 46 46 H 0.97000 * 119.99706 * 179.97438 * 20 19 17 47 47 H 1.08994 * 110.37240 * 36.99705 * 25 12 10 48 48 H 1.09004 * 110.45576 * 274.72116 * 25 12 10 49 49 H 1.08998 * 110.48648 * 143.48944 * 26 7 6 50 50 H 1.08999 * 110.48147 * 266.00238 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7211 -1.2493 5 7 2.0184 -0.6905 1.1962 6 6 3.4379 -0.8794 1.5222 7 6 3.4695 -1.9976 2.5876 8 1 4.2486 -1.8105 3.3266 9 7 3.6470 -3.3112 1.9637 10 6 4.1343 -4.3397 2.6856 11 8 4.4262 -4.1775 3.8547 12 7 4.2972 -5.5484 2.1118 13 6 3.9844 -5.8827 0.7147 14 6 4.3038 -7.3802 0.5188 15 6 4.2448 -7.9396 1.9649 16 8 2.8983 -8.2234 2.3497 17 6 5.1134 -9.1628 2.1066 18 1 5.6328 -9.5591 1.2466 19 6 5.2497 -9.7729 3.3357 20 7 4.6213 -9.2875 4.3840 21 14 6.3258 -11.2897 3.5113 22 1 7.7138 -10.8765 3.8402 23 1 5.7947 -12.1502 4.5987 24 1 6.3245 -12.0481 2.2346 25 6 4.8171 -6.7543 2.7815 26 6 2.0644 -1.8710 3.2207 27 6 1.2249 -1.2326 2.1361 28 8 0.0124 -1.2133 2.1170 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 3.1299 1.4427 0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6766 1.9564 0.8901 35 1 1.6767 -1.7488 -1.2493 36 1 1.6767 -0.2073 -2.1393 37 1 3.1300 -0.7207 -1.2495 38 1 3.8573 0.0409 1.9289 39 1 3.9915 -1.1875 0.6353 40 1 3.4138 -3.4407 1.0311 41 1 2.9279 -5.7007 0.5175 42 1 4.5959 -5.2796 0.0434 43 1 5.2999 -7.5096 0.0955 44 1 3.5516 -7.8566 -0.1100 45 1 2.8062 -8.5293 3.2625 46 1 4.7169 -9.7169 5.2485 47 1 4.4642 -6.7981 3.8118 48 1 5.9067 -6.7657 2.7537 49 1 1.6717 -2.8548 3.4777 50 1 2.0999 -1.2328 4.1036 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591977553.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:44 Heat of formation + Delta-G solvation = -126.564024 kcal Electronic energy + Delta-G solvation = -31243.093958 eV Core-core repulsion = 27076.529039 eV Total energy + Delta-G solvation = -4166.564919 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.05183 -41.01467 -39.14982 -37.83700 -37.14504 -36.04048 -34.22416 -34.18101 -31.82182 -30.45116 -29.50689 -28.89370 -28.17927 -27.90429 -26.82090 -24.37335 -22.90812 -22.28367 -21.43775 -21.04491 -19.64281 -19.27450 -18.84600 -17.92992 -17.46896 -17.06143 -16.79015 -16.57675 -16.26573 -16.13019 -15.44107 -15.22043 -15.03524 -14.79658 -14.71949 -14.68588 -14.58436 -14.32121 -14.06565 -13.72624 -13.50225 -13.31399 -13.15252 -12.98509 -12.95495 -12.82841 -12.79198 -12.57463 -12.53056 -12.41332 -12.31081 -12.22182 -12.11629 -12.08337 -11.91682 -11.32136 -11.18449 -10.65763 -10.64319 -10.32063 -10.16307 -9.69692 -9.33186 -8.23745 -6.40727 1.42775 1.45101 1.52178 1.54863 1.64494 1.92949 2.15528 2.39170 3.01761 3.03708 3.31218 3.41479 3.76966 3.81007 3.90937 3.96267 4.10677 4.11278 4.18459 4.20363 4.34443 4.52081 4.55326 4.61342 4.70576 4.74081 4.74585 4.77518 4.78337 4.85830 4.87810 4.97064 4.99251 5.07513 5.11524 5.22813 5.29630 5.31489 5.39690 5.41493 5.46913 5.49226 5.71465 5.77759 6.04340 6.10456 6.16091 6.66612 7.05066 7.15950 7.30460 7.37413 7.56790 8.81585 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.023556 B = 0.002579 C = 0.002520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.356376 B =10855.320845 C =11107.678023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.167 3.833 3 C -0.150 4.150 4 C -0.155 4.155 5 N -0.604 5.604 6 C 0.104 3.896 7 C 0.155 3.845 8 H 0.118 0.882 9 N -0.722 5.722 10 C 0.714 3.286 11 O -0.636 6.636 12 N -0.633 5.633 13 C 0.109 3.891 14 C -0.111 4.111 15 C 0.230 3.770 16 O -0.591 6.591 17 C -0.554 4.554 18 H 0.070 0.930 19 C 0.025 3.975 20 N -0.917 5.917 21 Si 0.965 3.035 22 H -0.275 1.275 23 H -0.286 1.286 24 H -0.265 1.265 25 C 0.128 3.872 26 C -0.170 4.170 27 C 0.516 3.484 28 O -0.571 6.571 29 H 0.045 0.955 30 H 0.077 0.923 31 H 0.040 0.960 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.049 0.951 35 H 0.046 0.954 36 H 0.084 0.916 37 H 0.077 0.923 38 H 0.120 0.880 39 H 0.110 0.890 40 H 0.406 0.594 41 H 0.064 0.936 42 H 0.095 0.905 43 H 0.092 0.908 44 H 0.081 0.919 45 H 0.374 0.626 46 H 0.269 0.731 47 H 0.040 0.960 48 H 0.044 0.956 49 H 0.075 0.925 50 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.352 21.288 -12.675 24.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.084 3.916 3 C -0.208 4.208 4 C -0.213 4.213 5 N -0.338 5.338 6 C -0.018 4.018 7 C 0.049 3.951 8 H 0.136 0.864 9 N -0.379 5.379 10 C 0.416 3.584 11 O -0.518 6.518 12 N -0.369 5.369 13 C -0.014 4.014 14 C -0.148 4.148 15 C 0.189 3.811 16 O -0.399 6.399 17 C -0.593 4.593 18 H 0.088 0.912 19 C -0.176 4.176 20 N -0.556 5.556 21 Si 0.790 3.210 22 H -0.201 1.201 23 H -0.212 1.212 24 H -0.190 1.190 25 C 0.004 3.996 26 C -0.212 4.212 27 C 0.305 3.695 28 O -0.451 6.451 29 H 0.065 0.935 30 H 0.096 0.904 31 H 0.059 0.941 32 H 0.096 0.904 33 H 0.102 0.898 34 H 0.068 0.932 35 H 0.065 0.935 36 H 0.103 0.897 37 H 0.096 0.904 38 H 0.138 0.862 39 H 0.128 0.872 40 H 0.243 0.757 41 H 0.082 0.918 42 H 0.113 0.887 43 H 0.110 0.890 44 H 0.100 0.900 45 H 0.224 0.776 46 H 0.078 0.922 47 H 0.058 0.942 48 H 0.062 0.938 49 H 0.093 0.907 50 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -0.939 21.708 -12.349 24.993 hybrid contribution 0.177 -1.521 1.146 1.913 sum -0.762 20.187 -11.204 23.100 Atomic orbital electron populations 1.22010 0.93799 1.01726 1.01803 1.20683 0.94174 0.93025 0.83687 1.22144 1.02487 0.93277 1.02922 1.22183 1.02533 1.00219 0.96380 1.48557 1.07403 1.55687 1.22183 1.22553 0.81568 0.98485 0.99203 1.21743 0.96295 0.81203 0.95861 0.86442 1.44956 1.69474 1.08826 1.14604 1.15676 0.78446 0.80111 0.84150 1.90864 1.60295 1.83588 1.17063 1.47854 1.66921 1.08567 1.13532 1.22090 1.00536 0.97052 0.81673 1.22603 1.02761 0.93229 0.96233 1.19896 0.80183 0.90302 0.90682 1.86077 1.29701 1.88921 1.35184 1.21811 1.29416 1.12528 0.95499 0.91163 1.25847 0.96348 1.00051 0.95370 1.69782 1.43559 1.41615 1.00664 0.85452 0.78633 0.78993 0.77922 1.20100 1.21164 1.18963 1.22645 0.96490 0.83399 0.97021 1.22859 0.96530 1.02679 0.99082 1.20986 0.87027 0.77653 0.83857 1.90704 1.14651 1.61213 1.78490 0.93538 0.90376 0.94120 0.90416 0.89838 0.93151 0.93503 0.89699 0.90376 0.86233 0.87181 0.75747 0.91776 0.88687 0.88967 0.90027 0.77640 0.92159 0.94159 0.93799 0.90684 0.85480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.60 7.00 71.98 0.50 -2.09 16 2 C 0.17 2.32 1.20 3.61 0.00 2.33 16 3 C -0.15 -1.36 8.54 71.98 0.61 -0.75 16 4 C -0.16 -1.61 8.49 71.98 0.61 -1.00 16 5 N -0.60 -10.09 2.76 -770.78 -2.13 -12.21 16 6 C 0.10 1.20 6.22 86.81 0.54 1.74 16 7 C 0.16 3.09 3.48 46.05 0.16 3.25 16 8 H 0.12 2.44 7.63 -2.39 -0.02 2.43 16 9 N -0.72 -18.31 5.10 -452.74 -2.31 -20.62 16 10 C 0.71 26.88 8.49 179.05 1.52 28.40 16 11 O -0.64 -29.41 16.29 -4.00 -0.07 -29.47 16 12 N -0.63 -24.84 3.33 -829.70 -2.76 -27.60 16 13 C 0.11 3.36 6.15 86.74 0.53 3.89 16 14 C -0.11 -4.04 6.13 31.80 0.20 -3.84 16 15 C 0.23 10.99 0.88 -10.15 -0.01 10.99 16 16 O -0.59 -30.76 13.17 -148.98 -1.96 -32.72 16 17 C -0.55 -28.47 8.26 25.60 0.21 -28.26 16 18 H 0.07 3.47 7.78 -2.91 -0.02 3.44 16 19 C 0.02 1.28 5.29 84.66 0.45 1.73 16 20 N -0.92 -50.16 10.69 21.45 0.23 -49.93 16 21 Si 0.96 41.54 29.54 68.60 2.03 43.56 16 22 H -0.28 -11.64 7.11 99.48 0.71 -10.93 16 23 H -0.29 -12.29 7.11 99.48 0.71 -11.58 16 24 H -0.27 -11.02 7.11 99.48 0.71 -10.32 16 25 C 0.13 6.20 5.51 86.85 0.48 6.68 16 26 C -0.17 -4.04 6.59 30.59 0.20 -3.84 16 27 C 0.52 12.91 7.84 87.90 0.69 13.60 16 28 O -0.57 -18.90 13.99 -3.02 -0.04 -18.94 16 29 H 0.05 1.09 7.06 -2.38 -0.02 1.07 16 30 H 0.08 1.09 8.14 -2.39 -0.02 1.08 16 31 H 0.04 1.01 7.08 -2.39 -0.02 0.99 16 32 H 0.08 0.46 7.90 -2.39 -0.02 0.44 16 33 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 34 H 0.05 0.58 8.14 -2.38 -0.02 0.56 16 35 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 36 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 37 H 0.08 0.55 7.21 -2.39 -0.02 0.53 16 38 H 0.12 0.76 8.14 -2.39 -0.02 0.74 16 39 H 0.11 0.85 7.05 -2.39 -0.02 0.84 16 40 H 0.41 8.43 7.61 -92.71 -0.71 7.72 16 41 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 42 H 0.10 2.14 8.14 -2.38 -0.02 2.13 16 43 H 0.09 3.08 8.03 -2.39 -0.02 3.06 16 44 H 0.08 2.85 8.14 -2.38 -0.02 2.83 16 45 H 0.37 20.66 7.25 -74.05 -0.54 20.12 16 46 H 0.27 14.16 8.31 -92.71 -0.77 13.39 16 47 H 0.04 2.27 7.47 -2.39 -0.02 2.25 16 48 H 0.04 2.19 8.03 -2.39 -0.02 2.17 16 49 H 0.07 2.32 8.09 -2.39 -0.02 2.30 16 50 H 0.13 2.56 8.14 -2.39 -0.02 2.54 16 Total: -1.00 -73.07 394.14 -0.60 -73.67 By element: Atomic # 1 Polarization: 41.72 SS G_CDS: -0.29 Total: 41.44 kcal Atomic # 6 Polarization: 26.13 SS G_CDS: 6.70 Total: 32.83 kcal Atomic # 7 Polarization: -103.40 SS G_CDS: -6.97 Total: -110.37 kcal Atomic # 8 Polarization: -79.06 SS G_CDS: -2.07 Total: -81.13 kcal Atomic # 14 Polarization: 41.54 SS G_CDS: 2.03 Total: 43.56 kcal Total: -73.07 -0.60 -73.67 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591977553.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.896 kcal (2) G-P(sol) polarization free energy of solvation -73.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds