Wall clock time and date at job start Tue Mar 31 2020 22:31:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.46871 * 2 1 4 4 C 1.52999 * 109.47128 * 240.00254 * 2 1 3 5 5 N 1.46497 * 109.47219 * 120.00040 * 2 1 3 6 6 C 1.46762 * 124.34850 * 180.19569 * 5 2 1 7 7 C 1.54479 * 105.53509 * 163.21275 * 6 5 2 8 8 H 1.09006 * 110.97141 * 267.09046 * 7 6 5 9 9 N 1.46501 * 111.00069 * 143.34462 * 7 6 5 10 10 C 1.34773 * 119.99822 * 161.15337 * 9 7 6 11 11 O 1.21586 * 120.00476 * 359.97438 * 10 9 7 12 12 N 1.34774 * 119.99846 * 179.97438 * 10 9 7 13 13 C 1.47024 * 125.64741 * 359.68844 * 12 10 9 14 14 C 1.54340 * 107.26429 * 178.85092 * 13 12 10 15 15 C 1.55151 * 103.02330 * 338.14139 * 14 13 12 16 16 O 1.42905 * 111.00555 * 277.23236 * 15 14 13 17 17 C 1.50697 * 111.00869 * 153.38136 * 15 14 13 18 18 H 1.08007 * 119.99886 * 6.35221 * 17 15 14 19 19 C 1.37871 * 120.00281 * 186.34974 * 17 15 14 20 20 N 1.31517 * 120.00253 * 0.02562 * 19 17 15 21 21 Si 1.86800 * 119.99998 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.47176 * 90.00119 * 21 19 17 23 23 H 1.48502 * 109.47000 * 209.99989 * 21 19 17 24 24 H 1.48498 * 109.47141 * 329.99961 * 21 19 17 25 25 C 1.47428 * 125.65101 * 179.97438 * 12 10 9 26 26 C 1.54623 * 101.76448 * 25.20998 * 7 6 5 27 27 C 1.34417 * 124.35094 * 0.02562 * 5 2 1 28 28 O 1.21283 * 124.94355 * 0.43141 * 27 5 2 29 29 H 1.09006 * 109.47418 * 299.99730 * 1 2 3 30 30 H 1.09001 * 109.47457 * 60.00262 * 1 2 3 31 31 H 1.09005 * 109.47276 * 180.02562 * 1 2 3 32 32 H 1.09008 * 109.46710 * 180.02562 * 3 2 1 33 33 H 1.08997 * 109.47111 * 299.99651 * 3 2 1 34 34 H 1.08995 * 109.46808 * 60.00409 * 3 2 1 35 35 H 1.08997 * 109.47052 * 299.99623 * 4 2 1 36 36 H 1.09001 * 109.47373 * 59.99432 * 4 2 1 37 37 H 1.08997 * 109.46933 * 180.02562 * 4 2 1 38 38 H 1.09004 * 110.38933 * 44.10688 * 6 5 2 39 39 H 1.08995 * 110.11843 * 282.18104 * 6 5 2 40 40 H 0.96998 * 120.00022 * 341.14348 * 9 7 6 41 41 H 1.08998 * 109.88771 * 298.39012 * 13 12 10 42 42 H 1.08997 * 109.88599 * 59.56255 * 13 12 10 43 43 H 1.09004 * 110.85130 * 219.67379 * 14 13 12 44 44 H 1.09005 * 110.66852 * 96.52338 * 14 13 12 45 45 H 0.96700 * 114.00070 * 173.64162 * 16 15 14 46 46 H 0.97000 * 120.00007 * 180.02562 * 20 19 17 47 47 H 1.09004 * 110.36321 * 322.92528 * 25 12 10 48 48 H 1.08993 * 110.36841 * 85.25101 * 25 12 10 49 49 H 1.09000 * 110.48720 * 216.52574 * 26 7 6 50 50 H 1.09003 * 110.60041 * 93.93250 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 7 2.0183 -0.6906 1.1961 6 6 3.4367 -0.8754 1.5245 7 6 3.4694 -1.2465 3.0237 8 1 3.6014 -0.3588 3.6425 9 7 4.5167 -2.2336 3.2976 10 6 4.9662 -2.4075 4.5562 11 8 4.5030 -1.7449 5.4643 12 7 5.9293 -3.3160 4.8082 13 6 6.5698 -4.1851 3.8101 14 6 7.6254 -5.0329 4.5510 15 6 7.9098 -4.1992 5.8282 16 8 8.8575 -3.1630 5.5631 17 6 8.3790 -5.0816 6.9560 18 1 8.5738 -6.1288 6.7772 19 6 8.5596 -4.5523 8.2162 20 7 8.3220 -3.2773 8.4342 21 14 9.1419 -5.6461 9.6141 22 1 10.6259 -5.6338 9.6670 23 1 8.5966 -5.1395 10.8991 24 1 8.6661 -7.0344 9.3874 25 6 6.5109 -3.6072 6.1312 26 6 2.0644 -1.8591 3.2275 27 6 1.2249 -1.2335 2.1355 28 8 0.0123 -1.2274 2.1089 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 1.6767 -1.7488 -1.2493 36 1 1.6766 -0.2074 -2.1393 37 1 3.1299 -0.7216 -1.2490 38 1 3.9898 0.0480 1.3524 39 1 3.8577 -1.6837 0.9267 40 1 4.8864 -2.7621 2.5731 41 1 5.8246 -4.8352 3.3518 42 1 7.0547 -3.5775 3.0461 43 1 8.5290 -5.1389 3.9505 44 1 7.2200 -6.0107 4.8111 45 1 8.9942 -2.5561 6.3034 46 1 8.4495 -2.9048 9.3207 47 1 6.6049 -2.6909 6.7142 48 1 5.8983 -4.3351 6.6631 49 1 1.6717 -1.5948 4.2094 50 1 2.0976 -2.9423 3.1099 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591977556.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:48 Heat of formation + Delta-G solvation = -102.879546 kcal Electronic energy + Delta-G solvation = -30763.163169 eV Core-core repulsion = 26597.625286 eV Total energy + Delta-G solvation = -4165.537883 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.10152 -39.63517 -37.60918 -36.95051 -36.14198 -34.28107 -33.22645 -32.24713 -30.36828 -29.32165 -28.16960 -27.77802 -27.70894 -27.02353 -25.03072 -22.90558 -21.98841 -21.41388 -19.82966 -19.67459 -18.76713 -17.68826 -17.06761 -16.86509 -16.63383 -15.74898 -15.33483 -15.20753 -14.96650 -14.52848 -14.34326 -14.24262 -14.09266 -13.96142 -13.73312 -13.52961 -13.10839 -13.07057 -12.82933 -12.53848 -12.49094 -12.37137 -12.10842 -11.98067 -11.92553 -11.68636 -11.56864 -11.44779 -11.32114 -11.26175 -11.04837 -10.85318 -10.64266 -10.48510 -10.22426 -9.79910 -9.63974 -9.39288 -8.98477 -8.94217 -8.71336 -8.39118 -7.76154 -6.29111 -4.38956 2.44284 2.55377 3.00280 3.20451 3.28147 3.30146 3.60504 4.10805 4.21388 4.25416 4.38271 4.53160 4.60233 4.67671 4.76159 4.82525 4.97934 5.08507 5.18694 5.27022 5.31092 5.35656 5.38451 5.41404 5.50101 5.59261 5.61196 5.66364 5.70163 5.76882 5.80242 5.94278 5.96265 6.06260 6.07057 6.40270 6.46851 6.57468 6.66730 6.84810 6.89078 6.90969 7.19021 7.28975 7.54875 7.72823 8.01120 8.01892 8.43972 8.65025 9.02661 9.27957 9.36295 10.77868 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.027204 B = 0.002289 C = 0.002231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.014922 B =12229.229007 C =12547.573948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.173 3.827 3 C -0.159 4.159 4 C -0.157 4.157 5 N -0.610 5.610 6 C 0.098 3.902 7 C 0.161 3.839 8 H 0.109 0.891 9 N -0.742 5.742 10 C 0.718 3.282 11 O -0.592 6.592 12 N -0.626 5.626 13 C 0.105 3.895 14 C -0.116 4.116 15 C 0.248 3.752 16 O -0.583 6.583 17 C -0.538 4.538 18 H 0.066 0.934 19 C 0.071 3.929 20 N -0.891 5.891 21 Si 0.903 3.097 22 H -0.278 1.278 23 H -0.284 1.284 24 H -0.272 1.272 25 C 0.113 3.887 26 C -0.170 4.170 27 C 0.524 3.476 28 O -0.528 6.528 29 H 0.069 0.931 30 H 0.057 0.943 31 H 0.069 0.931 32 H 0.060 0.940 33 H 0.069 0.931 34 H 0.061 0.939 35 H 0.060 0.940 36 H 0.068 0.932 37 H 0.060 0.940 38 H 0.088 0.912 39 H 0.076 0.924 40 H 0.395 0.605 41 H 0.051 0.949 42 H 0.056 0.944 43 H 0.074 0.926 44 H 0.077 0.923 45 H 0.381 0.619 46 H 0.270 0.730 47 H 0.086 0.914 48 H 0.058 0.942 49 H 0.108 0.892 50 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.312 5.124 -18.497 21.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.089 3.911 3 C -0.217 4.217 4 C -0.215 4.215 5 N -0.346 5.346 6 C -0.026 4.026 7 C 0.054 3.946 8 H 0.127 0.873 9 N -0.399 5.399 10 C 0.420 3.580 11 O -0.470 6.470 12 N -0.363 5.363 13 C -0.019 4.019 14 C -0.154 4.154 15 C 0.208 3.792 16 O -0.391 6.391 17 C -0.577 4.577 18 H 0.085 0.915 19 C -0.132 4.132 20 N -0.530 5.530 21 Si 0.730 3.270 22 H -0.204 1.204 23 H -0.210 1.210 24 H -0.197 1.197 25 C -0.008 4.008 26 C -0.212 4.212 27 C 0.312 3.688 28 O -0.404 6.404 29 H 0.088 0.912 30 H 0.075 0.925 31 H 0.088 0.912 32 H 0.079 0.921 33 H 0.088 0.912 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.087 0.913 37 H 0.079 0.921 38 H 0.106 0.894 39 H 0.094 0.906 40 H 0.230 0.770 41 H 0.069 0.931 42 H 0.074 0.926 43 H 0.092 0.908 44 H 0.096 0.904 45 H 0.231 0.769 46 H 0.080 0.920 47 H 0.104 0.896 48 H 0.076 0.924 49 H 0.127 0.873 50 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -10.339 5.543 -18.330 21.762 hybrid contribution 0.576 -0.564 0.958 1.252 sum -9.763 4.980 -17.372 20.540 Atomic orbital electron populations 1.22100 0.92044 1.03620 1.02024 1.20487 0.95367 0.91558 0.83654 1.22202 1.01620 0.95105 1.02778 1.22189 1.01551 1.01007 0.96772 1.48411 1.06685 1.56766 1.22692 1.22224 0.82590 1.02615 0.95145 1.21420 0.85975 0.92729 0.94519 0.87267 1.45020 1.42638 1.43537 1.08740 1.15458 0.79580 0.80475 0.82462 1.90907 1.61830 1.50293 1.43949 1.47951 1.38274 1.38173 1.11859 1.21943 0.95284 0.92724 0.91944 1.22590 0.97030 0.98078 0.97717 1.19629 0.84201 0.84996 0.90400 1.86099 1.63944 1.44536 1.44570 1.21443 1.46637 0.96187 0.93383 0.91549 1.25079 0.93869 0.95314 0.98964 1.69716 1.47809 1.11971 1.23487 0.86411 0.78969 0.80588 0.80985 1.20414 1.21007 1.19715 1.23163 0.95228 1.01485 0.80969 1.22916 0.95785 1.02623 0.99856 1.20874 0.87424 0.77410 0.83081 1.90719 1.12818 1.59171 1.77716 0.91219 0.92450 0.91245 0.92075 0.91246 0.91956 0.92125 0.91264 0.92132 0.89421 0.90624 0.77028 0.93083 0.92594 0.90779 0.90415 0.76899 0.91980 0.89553 0.92393 0.87343 0.87493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.32 7.00 37.15 0.26 -1.06 16 2 C 0.17 1.40 1.20 -131.82 -0.16 1.25 16 3 C -0.16 -1.08 8.49 37.16 0.32 -0.76 16 4 C -0.16 -1.02 8.54 37.16 0.32 -0.70 16 5 N -0.61 -5.77 2.76 -157.58 -0.43 -6.21 16 6 C 0.10 0.79 6.32 -3.12 -0.02 0.77 16 7 C 0.16 1.79 3.42 -66.30 -0.23 1.57 16 8 H 0.11 1.39 7.72 -51.93 -0.40 0.99 16 9 N -0.74 -9.54 5.15 -57.08 -0.29 -9.83 16 10 C 0.72 13.34 8.49 -86.92 -0.74 12.61 16 11 O -0.59 -13.36 16.34 5.29 0.09 -13.27 16 12 N -0.63 -12.09 3.33 -176.24 -0.59 -12.68 16 13 C 0.10 1.67 6.15 -3.05 -0.02 1.65 16 14 C -0.12 -2.16 6.13 -24.89 -0.15 -2.32 16 15 C 0.25 5.76 0.87 -89.64 -0.08 5.69 16 16 O -0.58 -14.29 13.16 -35.23 -0.46 -14.75 16 17 C -0.54 -13.61 8.27 -34.44 -0.28 -13.89 16 18 H 0.07 1.65 7.79 -52.48 -0.41 1.24 16 19 C 0.07 1.82 5.29 -17.82 -0.09 1.73 16 20 N -0.89 -23.36 10.69 55.43 0.59 -22.77 16 21 Si 0.90 20.03 29.54 -169.99 -5.02 15.01 16 22 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 23 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 24 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 25 C 0.11 2.63 5.38 -2.54 -0.01 2.62 16 26 C -0.17 -2.00 6.59 -26.74 -0.18 -2.18 16 27 C 0.52 6.40 7.84 -10.86 -0.09 6.32 16 28 O -0.53 -8.02 13.99 5.55 0.08 -7.94 16 29 H 0.07 0.79 7.08 -51.93 -0.37 0.42 16 30 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.07 0.77 7.06 -51.93 -0.37 0.41 16 32 H 0.06 0.37 7.22 -51.92 -0.37 0.00 16 33 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.06 0.35 7.90 -51.93 -0.41 -0.06 16 38 H 0.09 0.60 7.13 -51.93 -0.37 0.23 16 39 H 0.08 0.50 7.77 -51.93 -0.40 0.10 16 40 H 0.40 4.06 7.35 -40.82 -0.30 3.76 16 41 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 42 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 44 H 0.08 1.37 8.03 -51.93 -0.42 0.96 16 45 H 0.38 9.67 7.57 45.56 0.34 10.01 16 46 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 47 H 0.09 2.28 7.33 -51.93 -0.38 1.90 16 48 H 0.06 1.40 8.03 -51.93 -0.42 0.99 16 49 H 0.11 1.42 8.14 -51.93 -0.42 1.00 16 50 H 0.11 1.23 8.08 -51.93 -0.42 0.81 16 LS Contribution 393.90 15.07 5.94 5.94 Total: -1.00 -30.89 393.90 -8.89 -39.78 By element: Atomic # 1 Polarization: 21.08 SS G_CDS: -7.63 Total: 13.45 kcal Atomic # 6 Polarization: 14.43 SS G_CDS: -1.15 Total: 13.28 kcal Atomic # 7 Polarization: -50.77 SS G_CDS: -0.72 Total: -51.49 kcal Atomic # 8 Polarization: -35.67 SS G_CDS: -0.30 Total: -35.96 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.02 Total: 15.01 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -30.89 -8.89 -39.78 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591977556.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.100 kcal (2) G-P(sol) polarization free energy of solvation -30.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds