Wall clock time and date at job start Tue Mar 31 2020 22:31:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.46871 * 2 1 4 4 C 1.52999 * 109.47128 * 240.00254 * 2 1 3 5 5 N 1.46497 * 109.47219 * 120.00040 * 2 1 3 6 6 C 1.46762 * 124.34850 * 180.19569 * 5 2 1 7 7 C 1.54479 * 105.53509 * 163.21275 * 6 5 2 8 8 H 1.09006 * 110.97141 * 267.09046 * 7 6 5 9 9 N 1.46501 * 111.00069 * 143.34462 * 7 6 5 10 10 C 1.34773 * 119.99822 * 161.15337 * 9 7 6 11 11 O 1.21586 * 120.00476 * 359.97438 * 10 9 7 12 12 N 1.34774 * 119.99846 * 179.97438 * 10 9 7 13 13 C 1.47024 * 125.64741 * 359.68844 * 12 10 9 14 14 C 1.54340 * 107.26429 * 178.85092 * 13 12 10 15 15 C 1.55151 * 103.02330 * 338.14139 * 14 13 12 16 16 O 1.42905 * 111.00555 * 277.23236 * 15 14 13 17 17 C 1.50697 * 111.00869 * 153.38136 * 15 14 13 18 18 H 1.08007 * 119.99886 * 6.35221 * 17 15 14 19 19 C 1.37871 * 120.00281 * 186.34974 * 17 15 14 20 20 N 1.31517 * 120.00253 * 0.02562 * 19 17 15 21 21 Si 1.86800 * 119.99998 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.47176 * 90.00119 * 21 19 17 23 23 H 1.48502 * 109.47000 * 209.99989 * 21 19 17 24 24 H 1.48498 * 109.47141 * 329.99961 * 21 19 17 25 25 C 1.47428 * 125.65101 * 179.97438 * 12 10 9 26 26 C 1.54623 * 101.76448 * 25.20998 * 7 6 5 27 27 C 1.34417 * 124.35094 * 0.02562 * 5 2 1 28 28 O 1.21283 * 124.94355 * 0.43141 * 27 5 2 29 29 H 1.09006 * 109.47418 * 299.99730 * 1 2 3 30 30 H 1.09001 * 109.47457 * 60.00262 * 1 2 3 31 31 H 1.09005 * 109.47276 * 180.02562 * 1 2 3 32 32 H 1.09008 * 109.46710 * 180.02562 * 3 2 1 33 33 H 1.08997 * 109.47111 * 299.99651 * 3 2 1 34 34 H 1.08995 * 109.46808 * 60.00409 * 3 2 1 35 35 H 1.08997 * 109.47052 * 299.99623 * 4 2 1 36 36 H 1.09001 * 109.47373 * 59.99432 * 4 2 1 37 37 H 1.08997 * 109.46933 * 180.02562 * 4 2 1 38 38 H 1.09004 * 110.38933 * 44.10688 * 6 5 2 39 39 H 1.08995 * 110.11843 * 282.18104 * 6 5 2 40 40 H 0.96998 * 120.00022 * 341.14348 * 9 7 6 41 41 H 1.08998 * 109.88771 * 298.39012 * 13 12 10 42 42 H 1.08997 * 109.88599 * 59.56255 * 13 12 10 43 43 H 1.09004 * 110.85130 * 219.67379 * 14 13 12 44 44 H 1.09005 * 110.66852 * 96.52338 * 14 13 12 45 45 H 0.96700 * 114.00070 * 173.64162 * 16 15 14 46 46 H 0.97000 * 120.00007 * 180.02562 * 20 19 17 47 47 H 1.09004 * 110.36321 * 322.92528 * 25 12 10 48 48 H 1.08993 * 110.36841 * 85.25101 * 25 12 10 49 49 H 1.09000 * 110.48720 * 216.52574 * 26 7 6 50 50 H 1.09003 * 110.60041 * 93.93250 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 7 2.0183 -0.6906 1.1961 6 6 3.4367 -0.8754 1.5245 7 6 3.4694 -1.2465 3.0237 8 1 3.6014 -0.3588 3.6425 9 7 4.5167 -2.2336 3.2976 10 6 4.9662 -2.4075 4.5562 11 8 4.5030 -1.7449 5.4643 12 7 5.9293 -3.3160 4.8082 13 6 6.5698 -4.1851 3.8101 14 6 7.6254 -5.0329 4.5510 15 6 7.9098 -4.1992 5.8282 16 8 8.8575 -3.1630 5.5631 17 6 8.3790 -5.0816 6.9560 18 1 8.5738 -6.1288 6.7772 19 6 8.5596 -4.5523 8.2162 20 7 8.3220 -3.2773 8.4342 21 14 9.1419 -5.6461 9.6141 22 1 10.6259 -5.6338 9.6670 23 1 8.5966 -5.1395 10.8991 24 1 8.6661 -7.0344 9.3874 25 6 6.5109 -3.6072 6.1312 26 6 2.0644 -1.8591 3.2275 27 6 1.2249 -1.2335 2.1355 28 8 0.0123 -1.2274 2.1089 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 1.6767 -1.7488 -1.2493 36 1 1.6766 -0.2074 -2.1393 37 1 3.1299 -0.7216 -1.2490 38 1 3.9898 0.0480 1.3524 39 1 3.8577 -1.6837 0.9267 40 1 4.8864 -2.7621 2.5731 41 1 5.8246 -4.8352 3.3518 42 1 7.0547 -3.5775 3.0461 43 1 8.5290 -5.1389 3.9505 44 1 7.2200 -6.0107 4.8111 45 1 8.9942 -2.5561 6.3034 46 1 8.4495 -2.9048 9.3207 47 1 6.6049 -2.6909 6.7142 48 1 5.8983 -4.3351 6.6631 49 1 1.6717 -1.5948 4.2094 50 1 2.0976 -2.9423 3.1099 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591977556.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:47 Heat of formation + Delta-G solvation = -125.537520 kcal Electronic energy + Delta-G solvation = -30764.145693 eV Core-core repulsion = 26597.625286 eV Total energy + Delta-G solvation = -4166.520406 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.03062 -41.05184 -39.15114 -37.86613 -37.17510 -36.00188 -34.36839 -34.20201 -31.81419 -30.40029 -29.46350 -28.90136 -28.19874 -27.90817 -26.77607 -24.34029 -22.90882 -22.33534 -21.42370 -21.12286 -19.65509 -19.24208 -18.78749 -17.86052 -17.45348 -17.11945 -16.80486 -16.58822 -16.26744 -16.14388 -15.51583 -15.15111 -15.03075 -14.88622 -14.75506 -14.62729 -14.57034 -14.45898 -14.09464 -13.71161 -13.49085 -13.30488 -13.23423 -13.11080 -12.95911 -12.82905 -12.74582 -12.60615 -12.49601 -12.34034 -12.29547 -12.20960 -12.05189 -12.03922 -11.93494 -11.32468 -11.15348 -10.72484 -10.63921 -10.29015 -10.14950 -9.72727 -9.30974 -8.22431 -6.39061 1.42205 1.45470 1.48441 1.53519 1.54945 1.95076 2.16368 2.39791 2.99675 3.04471 3.32057 3.44959 3.77072 3.84247 3.89121 3.93341 3.99762 4.10005 4.13052 4.23610 4.39886 4.47175 4.49166 4.67849 4.69833 4.72440 4.74593 4.78754 4.81117 4.83592 4.86509 4.95213 4.97851 5.12017 5.15714 5.21428 5.30125 5.32792 5.39334 5.41527 5.46626 5.50467 5.67363 5.79228 6.06283 6.08097 6.19927 6.68317 7.07918 7.11217 7.30992 7.38039 7.59038 8.82373 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.027204 B = 0.002289 C = 0.002231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.014922 B =12229.229007 C =12547.573948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.166 3.834 3 C -0.155 4.155 4 C -0.151 4.151 5 N -0.602 5.602 6 C 0.107 3.893 7 C 0.161 3.839 8 H 0.091 0.909 9 N -0.715 5.715 10 C 0.714 3.286 11 O -0.640 6.640 12 N -0.632 5.632 13 C 0.106 3.894 14 C -0.112 4.112 15 C 0.232 3.768 16 O -0.586 6.586 17 C -0.555 4.555 18 H 0.068 0.932 19 C 0.026 3.974 20 N -0.914 5.914 21 Si 0.961 3.039 22 H -0.275 1.275 23 H -0.288 1.288 24 H -0.265 1.265 25 C 0.128 3.872 26 C -0.167 4.167 27 C 0.521 3.479 28 O -0.565 6.565 29 H 0.043 0.957 30 H 0.079 0.921 31 H 0.047 0.953 32 H 0.074 0.926 33 H 0.086 0.914 34 H 0.045 0.955 35 H 0.050 0.950 36 H 0.085 0.915 37 H 0.075 0.925 38 H 0.110 0.890 39 H 0.106 0.894 40 H 0.414 0.586 41 H 0.092 0.908 42 H 0.080 0.920 43 H 0.085 0.915 44 H 0.086 0.914 45 H 0.372 0.628 46 H 0.268 0.732 47 H 0.044 0.956 48 H 0.037 0.963 49 H 0.086 0.914 50 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.452 4.476 -21.767 23.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.083 3.917 3 C -0.213 4.213 4 C -0.209 4.209 5 N -0.336 5.336 6 C -0.016 4.016 7 C 0.054 3.946 8 H 0.109 0.891 9 N -0.373 5.373 10 C 0.416 3.584 11 O -0.522 6.522 12 N -0.368 5.368 13 C -0.015 4.015 14 C -0.150 4.150 15 C 0.191 3.809 16 O -0.393 6.393 17 C -0.593 4.593 18 H 0.086 0.914 19 C -0.175 4.175 20 N -0.554 5.554 21 Si 0.786 3.214 22 H -0.201 1.201 23 H -0.214 1.214 24 H -0.190 1.190 25 C 0.005 3.995 26 C -0.209 4.209 27 C 0.309 3.691 28 O -0.445 6.445 29 H 0.062 0.938 30 H 0.098 0.902 31 H 0.066 0.934 32 H 0.093 0.907 33 H 0.105 0.895 34 H 0.065 0.935 35 H 0.069 0.931 36 H 0.104 0.896 37 H 0.094 0.906 38 H 0.129 0.871 39 H 0.124 0.876 40 H 0.252 0.748 41 H 0.110 0.890 42 H 0.098 0.902 43 H 0.104 0.896 44 H 0.104 0.896 45 H 0.221 0.779 46 H 0.077 0.923 47 H 0.062 0.938 48 H 0.055 0.945 49 H 0.105 0.895 50 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -9.452 4.878 -21.702 24.169 hybrid contribution 0.276 -0.335 1.959 2.006 sum -9.176 4.543 -19.744 22.241 Atomic orbital electron populations 1.22020 0.93390 1.02108 1.01811 1.20723 0.94451 0.92717 0.83769 1.22184 1.02426 0.93790 1.02930 1.22151 1.02437 1.00290 0.96048 1.48500 1.06978 1.55652 1.22447 1.22315 0.81885 1.04802 0.92609 1.21438 0.84848 0.91462 0.96833 0.89068 1.44693 1.42050 1.43459 1.07053 1.15648 0.79246 0.79866 0.83611 1.90879 1.63297 1.51976 1.46029 1.47852 1.38681 1.39105 1.11152 1.22148 0.95595 0.92757 0.91033 1.22593 0.98528 0.98107 0.95738 1.19856 0.83473 0.84957 0.92590 1.86089 1.64458 1.44710 1.44085 1.21807 1.46476 0.96629 0.94368 0.91372 1.25805 0.94137 0.96368 1.01193 1.69841 1.48617 1.13256 1.23643 0.85510 0.78447 0.79260 0.78142 1.20073 1.21377 1.18971 1.22635 0.95614 0.98775 0.82515 1.22824 0.96143 1.03004 0.98895 1.20880 0.87031 0.77586 0.83650 1.90706 1.14366 1.60816 1.78600 0.93832 0.90188 0.93402 0.90688 0.89480 0.93531 0.93063 0.89646 0.90597 0.87145 0.87644 0.74798 0.88997 0.90213 0.89602 0.89551 0.77936 0.92273 0.93754 0.94466 0.89525 0.86940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.45 7.00 71.98 0.50 -1.95 16 2 C 0.17 2.30 1.20 3.60 0.00 2.31 16 3 C -0.16 -1.65 8.49 71.98 0.61 -1.04 16 4 C -0.15 -1.40 8.54 71.98 0.61 -0.78 16 5 N -0.60 -10.21 2.76 -771.05 -2.13 -12.34 16 6 C 0.11 1.35 6.32 86.83 0.55 1.89 16 7 C 0.16 3.35 3.42 46.05 0.16 3.51 16 8 H 0.09 2.31 7.72 -2.38 -0.02 2.29 16 9 N -0.71 -16.72 5.15 -452.77 -2.33 -19.05 16 10 C 0.71 26.14 8.49 179.06 1.52 27.65 16 11 O -0.64 -29.79 16.34 -3.99 -0.07 -29.86 16 12 N -0.63 -23.81 3.33 -829.76 -2.76 -26.57 16 13 C 0.11 3.03 6.15 86.73 0.53 3.56 16 14 C -0.11 -3.90 6.13 31.79 0.19 -3.71 16 15 C 0.23 10.73 0.87 -10.16 -0.01 10.72 16 16 O -0.59 -28.87 13.16 -148.98 -1.96 -30.83 16 17 C -0.55 -28.14 8.27 25.60 0.21 -27.92 16 18 H 0.07 3.34 7.79 -2.91 -0.02 3.32 16 19 C 0.03 1.34 5.29 84.65 0.45 1.79 16 20 N -0.91 -49.45 10.69 21.45 0.23 -49.22 16 21 Si 0.96 41.38 29.54 68.60 2.03 43.41 16 22 H -0.28 -11.63 7.11 99.48 0.71 -10.92 16 23 H -0.29 -12.46 7.11 99.48 0.71 -11.75 16 24 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 25 C 0.13 6.11 5.38 86.85 0.47 6.58 16 26 C -0.17 -3.92 6.59 30.59 0.20 -3.72 16 27 C 0.52 12.64 7.84 87.90 0.69 13.33 16 28 O -0.57 -17.77 13.99 -3.04 -0.04 -17.82 16 29 H 0.04 1.01 7.08 -2.38 -0.02 0.99 16 30 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.05 1.07 7.06 -2.38 -0.02 1.05 16 32 H 0.07 0.61 7.22 -2.38 -0.02 0.59 16 33 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 35 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 36 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 37 H 0.08 0.50 7.90 -2.39 -0.02 0.48 16 38 H 0.11 1.02 7.13 -2.38 -0.02 1.00 16 39 H 0.11 0.82 7.77 -2.39 -0.02 0.80 16 40 H 0.41 6.71 7.35 -92.71 -0.68 6.03 16 41 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 42 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 43 H 0.09 2.79 8.14 -2.38 -0.02 2.77 16 44 H 0.09 2.84 8.03 -2.38 -0.02 2.82 16 45 H 0.37 19.48 7.57 -74.06 -0.56 18.92 16 46 H 0.27 14.00 8.31 -92.71 -0.77 13.23 16 47 H 0.04 2.46 7.33 -2.38 -0.02 2.44 16 48 H 0.04 1.87 8.03 -2.39 -0.02 1.85 16 49 H 0.09 2.41 8.14 -2.39 -0.02 2.40 16 50 H 0.11 2.49 8.08 -2.39 -0.02 2.47 16 Total: -1.00 -71.80 393.90 -0.62 -72.42 By element: Atomic # 1 Polarization: 37.93 SS G_CDS: -0.29 Total: 37.64 kcal Atomic # 6 Polarization: 25.53 SS G_CDS: 6.70 Total: 32.22 kcal Atomic # 7 Polarization: -100.20 SS G_CDS: -6.99 Total: -107.19 kcal Atomic # 8 Polarization: -76.43 SS G_CDS: -2.07 Total: -78.50 kcal Atomic # 14 Polarization: 41.38 SS G_CDS: 2.03 Total: 43.41 kcal Total: -71.80 -0.62 -72.42 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591977556.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.116 kcal (2) G-P(sol) polarization free energy of solvation -71.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds