Wall clock time and date at job start Tue Mar 31 2020 22:31:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52991 * 109.47407 * 2 1 4 4 C 1.52994 * 109.47171 * 239.99423 * 2 1 3 5 5 N 1.46509 * 109.46634 * 120.00100 * 2 1 3 6 6 C 1.46755 * 124.35265 * 59.99953 * 5 2 1 7 7 C 1.54476 * 105.47483 * 162.98124 * 6 5 2 8 8 H 1.08998 * 111.00182 * 143.54767 * 7 6 5 9 9 N 1.46502 * 110.97177 * 267.29905 * 7 6 5 10 10 C 1.34773 * 120.00121 * 198.83019 * 9 7 6 11 11 O 1.21593 * 119.99796 * 0.02562 * 10 9 7 12 12 N 1.34775 * 120.00233 * 179.97438 * 10 9 7 13 13 C 1.47423 * 125.64744 * 359.70018 * 12 10 9 14 14 C 1.55130 * 104.72568 * 155.81106 * 13 12 10 15 15 C 1.55162 * 101.48473 * 37.29354 * 14 13 12 16 16 O 1.42899 * 110.86845 * 82.76432 * 15 14 13 17 17 C 1.50694 * 110.71995 * 205.97013 * 15 14 13 18 18 H 1.08002 * 120.00415 * 354.97859 * 17 15 14 19 19 C 1.37876 * 120.00106 * 174.97563 * 17 15 14 20 20 N 1.31516 * 119.99625 * 0.02562 * 19 17 15 21 21 Si 1.86796 * 120.00624 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.46940 * 89.99949 * 21 19 17 23 23 H 1.48498 * 109.47601 * 210.00202 * 21 19 17 24 24 H 1.48500 * 109.46870 * 330.00573 * 21 19 17 25 25 C 1.47023 * 125.65043 * 179.97438 * 12 10 9 26 26 C 1.54627 * 101.76424 * 25.41616 * 7 6 5 27 27 C 1.34424 * 124.34231 * 239.99459 * 5 2 1 28 28 O 1.21276 * 124.94682 * 0.45878 * 27 5 2 29 29 H 1.09004 * 109.47251 * 300.00193 * 1 2 3 30 30 H 1.09002 * 109.46750 * 60.00089 * 1 2 3 31 31 H 1.09004 * 109.47425 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47211 * 179.97438 * 3 2 1 33 33 H 1.09002 * 109.47093 * 299.99701 * 3 2 1 34 34 H 1.08998 * 109.47322 * 60.00043 * 3 2 1 35 35 H 1.09001 * 109.47796 * 300.00228 * 4 2 1 36 36 H 1.09002 * 109.46885 * 60.00571 * 4 2 1 37 37 H 1.09002 * 109.47403 * 179.97438 * 4 2 1 38 38 H 1.08999 * 110.24678 * 43.98589 * 6 5 2 39 39 H 1.09003 * 110.24487 * 281.97930 * 6 5 2 40 40 H 0.97003 * 119.99940 * 18.83000 * 9 7 6 41 41 H 1.09003 * 110.36831 * 274.74100 * 13 12 10 42 42 H 1.09003 * 110.36620 * 37.06719 * 13 12 10 43 43 H 1.09000 * 111.19224 * 279.19127 * 14 13 12 44 44 H 1.08999 * 110.94198 * 155.29188 * 14 13 12 45 45 H 0.96700 * 113.99481 * 184.93492 * 16 15 14 46 46 H 0.97008 * 119.99953 * 180.02562 * 20 19 17 47 47 H 1.08998 * 109.88163 * 300.44625 * 25 12 10 48 48 H 1.09000 * 109.87996 * 61.45625 * 25 12 10 49 49 H 1.09001 * 110.48777 * 93.88219 * 26 7 6 50 50 H 1.09000 * 110.48903 * 216.52672 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2491 5 7 2.0182 -0.6907 1.1963 6 6 1.7230 -2.0907 1.5226 7 6 2.7663 -2.4944 2.5880 8 1 2.3299 -3.1662 3.3271 9 7 3.9453 -3.1002 1.9642 10 6 4.7859 -3.8528 2.7013 11 8 4.5654 -4.0295 3.8839 12 7 5.8703 -4.4106 2.1273 13 6 6.2520 -4.2850 0.7089 14 6 7.7837 -4.5297 0.6895 15 6 7.9332 -5.6371 1.7661 16 8 7.6561 -6.9253 1.2131 17 6 9.3111 -5.6057 2.3755 18 1 10.0577 -4.9283 1.9880 19 6 9.6187 -6.4418 3.4278 20 7 8.7097 -7.2670 3.8993 21 14 11.3268 -6.4034 4.1829 22 1 11.3578 -5.4107 5.2868 23 1 11.6625 -7.7479 4.7166 24 1 12.3181 -6.0211 3.1454 25 6 6.8655 -5.2497 2.8107 26 6 3.1158 -1.1275 3.2207 27 6 2.7943 -0.1233 2.1359 28 8 3.1797 1.0264 2.1171 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 3.1301 1.4423 0.0005 33 1 1.6767 1.9562 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6767 -1.7490 -1.2491 36 1 1.6767 -0.2075 -2.1391 37 1 3.1300 -0.7210 -1.2494 38 1 1.8289 -2.7152 0.6356 39 1 0.7154 -2.1789 1.9290 40 1 4.1210 -2.9596 1.0206 41 1 5.7378 -5.0364 0.1097 42 1 6.0236 -3.2844 0.3418 43 1 8.3301 -3.6308 0.9752 44 1 8.1087 -4.8879 -0.2873 45 1 7.6624 -7.6417 1.8626 46 1 8.9260 -7.8550 4.6400 47 1 7.3278 -4.6892 3.6232 48 1 6.3866 -6.1462 3.2046 49 1 2.5008 -0.9468 4.1024 50 1 4.1743 -1.0855 3.4777 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591977558.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:52 Heat of formation + Delta-G solvation = -102.819178 kcal Electronic energy + Delta-G solvation = -31200.630933 eV Core-core repulsion = 27035.095668 eV Total energy + Delta-G solvation = -4165.535265 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.13248 -39.59684 -37.60640 -36.92351 -36.14097 -34.30525 -33.07926 -32.23425 -30.31121 -29.35143 -28.16574 -27.76880 -27.69763 -27.05463 -25.02972 -22.91551 -22.05263 -21.36417 -19.81738 -19.56577 -18.78610 -17.67640 -17.08662 -16.87734 -16.70111 -15.75808 -15.32515 -15.21566 -14.86664 -14.51843 -14.27531 -14.27354 -14.06065 -13.91202 -13.72039 -13.47331 -13.07760 -12.89898 -12.87859 -12.52206 -12.40606 -12.35931 -12.06956 -11.99726 -11.78685 -11.76797 -11.60153 -11.48821 -11.43588 -11.30231 -11.05245 -10.82966 -10.69612 -10.50121 -10.19518 -9.70810 -9.62894 -9.33184 -9.01723 -8.90854 -8.68690 -8.33809 -7.82999 -6.28893 -4.37303 2.48153 2.67245 2.94670 3.21863 3.29233 3.31919 3.59968 4.12795 4.21845 4.25226 4.33358 4.54754 4.59807 4.66451 4.71029 4.97269 4.99131 5.10225 5.19464 5.27452 5.32322 5.33897 5.39557 5.42530 5.51765 5.58475 5.62925 5.65853 5.70741 5.75561 5.82828 5.95601 5.96358 6.06196 6.09078 6.42799 6.47536 6.60523 6.68466 6.86092 6.93026 6.93756 7.21478 7.29291 7.55814 7.72653 8.02415 8.06266 8.43838 8.66167 9.02541 9.28157 9.37173 10.78888 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.020985 B = 0.002605 C = 0.002559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.984630 B =10745.444949 C =10939.422213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.173 3.827 3 C -0.141 4.141 4 C -0.159 4.159 5 N -0.614 5.614 6 C 0.096 3.904 7 C 0.159 3.841 8 H 0.116 0.884 9 N -0.744 5.744 10 C 0.717 3.283 11 O -0.593 6.593 12 N -0.628 5.628 13 C 0.103 3.897 14 C -0.116 4.116 15 C 0.248 3.752 16 O -0.585 6.585 17 C -0.537 4.537 18 H 0.066 0.934 19 C 0.071 3.929 20 N -0.893 5.893 21 Si 0.903 3.097 22 H -0.278 1.278 23 H -0.284 1.284 24 H -0.272 1.272 25 C 0.123 3.877 26 C -0.170 4.170 27 C 0.522 3.478 28 O -0.528 6.528 29 H 0.059 0.941 30 H 0.068 0.932 31 H 0.059 0.941 32 H 0.069 0.931 33 H 0.056 0.944 34 H 0.068 0.932 35 H 0.060 0.940 36 H 0.069 0.931 37 H 0.061 0.939 38 H 0.086 0.914 39 H 0.087 0.913 40 H 0.394 0.606 41 H 0.063 0.937 42 H 0.054 0.946 43 H 0.077 0.923 44 H 0.075 0.925 45 H 0.382 0.618 46 H 0.270 0.730 47 H 0.065 0.935 48 H 0.064 0.936 49 H 0.111 0.889 50 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.867 10.714 -9.083 21.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.090 3.910 3 C -0.198 4.198 4 C -0.217 4.217 5 N -0.349 5.349 6 C -0.028 4.028 7 C 0.051 3.949 8 H 0.133 0.867 9 N -0.401 5.401 10 C 0.419 3.581 11 O -0.471 6.471 12 N -0.365 5.365 13 C -0.020 4.020 14 C -0.154 4.154 15 C 0.208 3.792 16 O -0.394 6.394 17 C -0.576 4.576 18 H 0.084 0.916 19 C -0.133 4.133 20 N -0.532 5.532 21 Si 0.731 3.269 22 H -0.204 1.204 23 H -0.210 1.210 24 H -0.197 1.197 25 C 0.001 3.999 26 C -0.212 4.212 27 C 0.310 3.690 28 O -0.405 6.405 29 H 0.078 0.922 30 H 0.087 0.913 31 H 0.078 0.922 32 H 0.088 0.912 33 H 0.075 0.925 34 H 0.087 0.913 35 H 0.079 0.921 36 H 0.088 0.912 37 H 0.080 0.920 38 H 0.104 0.896 39 H 0.105 0.895 40 H 0.228 0.772 41 H 0.081 0.919 42 H 0.072 0.928 43 H 0.095 0.905 44 H 0.094 0.906 45 H 0.233 0.767 46 H 0.080 0.920 47 H 0.083 0.917 48 H 0.082 0.918 49 H 0.130 0.870 50 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -16.967 11.440 -8.651 22.217 hybrid contribution 0.935 -0.385 0.560 1.156 sum -16.031 11.055 -8.091 21.088 Atomic orbital electron populations 1.22186 0.94287 1.02370 1.02617 1.20465 0.93766 0.93072 0.83723 1.22091 1.02648 0.93134 1.01909 1.22204 1.02025 1.00715 0.96790 1.48458 1.51324 1.12457 1.22685 1.22361 0.98897 0.82330 0.99216 1.21520 0.85169 0.93609 0.94556 0.86662 1.45145 1.26739 1.55440 1.12820 1.15476 0.79369 0.78615 0.84642 1.90901 1.75517 1.66592 1.14113 1.47984 1.24690 1.52981 1.10833 1.22285 0.97662 0.99201 0.82888 1.22760 0.92555 0.99439 1.00610 1.19496 0.91440 0.81008 0.87289 1.86100 1.94073 1.18341 1.40857 1.21486 0.97092 1.22473 1.16526 0.91574 1.25069 0.97788 0.94518 0.95889 1.69696 1.33778 1.23244 1.26485 0.86405 0.83644 0.77521 0.79364 1.20410 1.20988 1.19716 1.22887 0.87540 0.92841 0.96635 1.22900 1.05790 0.94295 0.98184 1.20926 0.77015 0.87886 0.83160 1.90719 1.54427 1.17855 1.77477 0.92152 0.91326 0.92181 0.91220 0.92509 0.91289 0.92126 0.91241 0.91956 0.89584 0.89515 0.77151 0.91924 0.92762 0.90461 0.90618 0.76732 0.92000 0.91698 0.91799 0.87046 0.87398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.98 8.54 37.16 0.32 -0.67 16 2 C 0.17 1.40 1.20 -131.82 -0.16 1.24 16 3 C -0.14 -1.35 7.00 37.15 0.26 -1.09 16 4 C -0.16 -1.09 8.49 37.15 0.32 -0.78 16 5 N -0.61 -5.67 2.76 -157.58 -0.43 -6.11 16 6 C 0.10 0.72 6.21 -3.13 -0.02 0.70 16 7 C 0.16 1.69 3.43 -66.30 -0.23 1.46 16 8 H 0.12 1.28 7.72 -51.93 -0.40 0.88 16 9 N -0.74 -9.87 5.12 -57.08 -0.29 -10.17 16 10 C 0.72 13.44 8.49 -86.92 -0.74 12.70 16 11 O -0.59 -13.29 16.41 5.28 0.09 -13.20 16 12 N -0.63 -12.40 3.32 -176.10 -0.59 -12.99 16 13 C 0.10 1.71 6.58 -2.41 -0.02 1.70 16 14 C -0.12 -2.23 6.24 -24.46 -0.15 -2.39 16 15 C 0.25 5.85 0.85 -89.94 -0.08 5.78 16 16 O -0.58 -14.30 13.08 -35.23 -0.46 -14.76 16 17 C -0.54 -13.87 8.12 -34.44 -0.28 -14.15 16 18 H 0.07 1.69 7.78 -52.49 -0.41 1.28 16 19 C 0.07 1.83 5.27 -17.82 -0.09 1.74 16 20 N -0.89 -23.54 10.97 55.43 0.61 -22.94 16 21 Si 0.90 20.39 29.54 -169.99 -5.02 15.37 16 22 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 23 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 24 H -0.27 -6.10 7.11 56.52 0.40 -5.69 16 25 C 0.12 2.92 5.23 -3.06 -0.02 2.90 16 26 C -0.17 -1.97 6.58 -26.74 -0.18 -2.15 16 27 C 0.52 6.41 7.84 -10.86 -0.09 6.33 16 28 O -0.53 -8.22 13.99 5.56 0.08 -8.14 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.33 7.90 -51.93 -0.41 -0.08 16 32 H 0.07 0.82 7.08 -51.93 -0.37 0.46 16 33 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.07 0.78 7.06 -51.93 -0.37 0.41 16 35 H 0.06 0.37 7.21 -51.93 -0.37 -0.01 16 36 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.09 0.56 7.02 -51.93 -0.36 0.20 16 39 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.39 4.53 7.05 -40.82 -0.29 4.24 16 41 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 42 H 0.05 0.73 7.29 -51.93 -0.38 0.36 16 43 H 0.08 1.46 8.04 -51.93 -0.42 1.04 16 44 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 45 H 0.38 9.60 7.45 45.56 0.34 9.94 16 46 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 47 H 0.06 1.70 7.81 -51.93 -0.41 1.30 16 48 H 0.06 1.66 7.93 -51.93 -0.41 1.25 16 49 H 0.11 1.10 8.14 -51.93 -0.42 0.68 16 50 H 0.11 1.53 8.09 -51.93 -0.42 1.11 16 LS Contribution 393.60 15.07 5.93 5.93 Total: -1.00 -31.24 393.60 -8.85 -40.09 By element: Atomic # 1 Polarization: 21.18 SS G_CDS: -7.61 Total: 13.57 kcal Atomic # 6 Polarization: 14.48 SS G_CDS: -1.15 Total: 13.33 kcal Atomic # 7 Polarization: -51.49 SS G_CDS: -0.70 Total: -52.20 kcal Atomic # 8 Polarization: -35.80 SS G_CDS: -0.30 Total: -36.10 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -31.24 -8.85 -40.09 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591977558.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.725 kcal (2) G-P(sol) polarization free energy of solvation -31.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds