Wall clock time and date at job start Tue Mar 31 2020 22:31:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52991 * 109.47223 * 2 1 4 4 C 1.53000 * 109.47337 * 239.99323 * 2 1 3 5 5 N 1.46507 * 109.46696 * 119.99590 * 2 1 3 6 6 C 1.46759 * 124.34963 * 179.97438 * 5 2 1 7 7 C 1.54479 * 105.47479 * 197.03429 * 6 5 2 8 8 H 1.08999 * 111.00014 * 92.71606 * 7 6 5 9 9 N 1.46498 * 110.96925 * 216.46534 * 7 6 5 10 10 C 1.34777 * 119.99828 * 198.55598 * 9 7 6 11 11 O 1.21593 * 119.99949 * 0.28071 * 10 9 7 12 12 N 1.34777 * 120.00128 * 180.27942 * 10 9 7 13 13 C 1.47420 * 125.64845 * 0.02562 * 12 10 9 14 14 C 1.54902 * 104.83806 * 204.09446 * 13 12 10 15 15 C 1.55158 * 101.57989 * 322.99353 * 14 13 12 16 16 O 1.42898 * 110.71995 * 276.95955 * 15 14 13 17 17 C 1.50701 * 110.72380 * 153.86062 * 15 14 13 18 18 H 1.08006 * 119.99771 * 0.02562 * 17 15 14 19 19 C 1.37870 * 120.00259 * 179.97438 * 17 15 14 20 20 N 1.31515 * 120.00259 * 0.02562 * 19 17 15 21 21 Si 1.86807 * 120.00302 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.46830 * 89.99781 * 21 19 17 23 23 H 1.48490 * 109.47589 * 210.00444 * 21 19 17 24 24 H 1.48501 * 109.46753 * 330.00324 * 21 19 17 25 25 C 1.47017 * 125.64923 * 179.72224 * 12 10 9 26 26 C 1.54629 * 101.76423 * 334.58655 * 7 6 5 27 27 C 1.34426 * 124.34873 * 359.97377 * 5 2 1 28 28 O 1.21275 * 124.94226 * 359.60782 * 27 5 2 29 29 H 1.08996 * 109.47772 * 300.00728 * 1 2 3 30 30 H 1.09005 * 109.46539 * 60.00540 * 1 2 3 31 31 H 1.08997 * 109.47121 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47130 * 180.02562 * 3 2 1 33 33 H 1.09005 * 109.46922 * 299.99226 * 3 2 1 34 34 H 1.09000 * 109.47825 * 59.99056 * 3 2 1 35 35 H 1.09007 * 109.46883 * 300.00482 * 4 2 1 36 36 H 1.08991 * 109.47040 * 60.00000 * 4 2 1 37 37 H 1.08994 * 109.46790 * 180.02562 * 4 2 1 38 38 H 1.09004 * 110.24294 * 78.04017 * 6 5 2 39 39 H 1.08991 * 110.24805 * 316.03774 * 6 5 2 40 40 H 0.97001 * 120.00384 * 18.84045 * 9 7 6 41 41 H 1.09002 * 110.36760 * 322.93551 * 13 12 10 42 42 H 1.08999 * 110.36591 * 85.25520 * 13 12 10 43 43 H 1.09001 * 111.00717 * 81.06300 * 14 13 12 44 44 H 1.08999 * 111.00902 * 204.91756 * 14 13 12 45 45 H 0.96704 * 113.99699 * 180.02562 * 16 15 14 46 46 H 0.96997 * 120.00189 * 179.97438 * 20 19 17 47 47 H 1.09005 * 109.88004 * 298.38970 * 25 12 10 48 48 H 1.08998 * 109.89011 * 59.55426 * 25 12 10 49 49 H 1.09002 * 110.48693 * 143.47350 * 26 7 6 50 50 H 1.08996 * 110.48753 * 265.98354 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0401 -0.7214 -1.2491 5 7 2.0183 -0.6906 1.1963 6 6 3.4366 -0.8795 1.5225 7 6 3.4692 -1.9978 2.5877 8 1 3.6015 -2.9753 2.1240 9 7 4.5162 -1.7455 3.5809 10 6 4.9621 -2.7506 4.3601 11 8 4.4990 -3.8680 4.2353 12 7 5.9214 -2.5174 5.2777 13 6 6.5671 -1.2171 5.5341 14 6 7.9377 -1.5720 6.1625 15 6 7.5714 -2.8019 7.0346 16 8 7.0367 -2.3880 8.2934 17 6 8.7718 -3.6910 7.2337 18 1 9.7201 -3.4253 6.7901 19 6 8.6599 -4.8428 7.9830 20 7 7.5054 -5.1661 8.5236 21 14 10.1481 -5.9445 8.2305 22 1 10.8817 -5.5189 9.4496 23 1 9.7016 -7.3520 8.3875 24 1 11.0443 -5.8381 7.0512 25 6 6.4926 -3.5160 6.1929 26 6 2.0640 -1.8713 3.2206 27 6 1.2246 -1.2326 2.1362 28 8 0.0122 -1.2131 2.1171 29 1 -0.3634 0.5139 0.8898 30 1 -0.3632 0.5138 -0.8901 31 1 -0.3633 -1.0276 0.0005 32 1 3.1300 1.4424 -0.0005 33 1 1.6768 1.9562 -0.8901 34 1 1.6766 1.9564 0.8899 35 1 1.6766 -1.7491 -1.2490 36 1 1.6768 -0.2077 -2.1391 37 1 3.1300 -0.7217 -1.2488 38 1 3.8560 0.0409 1.9290 39 1 3.9899 -1.1874 0.6354 40 1 4.8856 -0.8541 3.6805 41 1 6.7075 -0.6726 4.6003 42 1 5.9710 -0.6285 6.2314 43 1 8.6624 -1.8401 5.3938 44 1 8.3089 -0.7530 6.7785 45 1 6.7920 -3.1196 8.8765 46 1 7.4266 -5.9767 9.0505 47 1 5.7128 -3.9109 6.8442 48 1 6.9466 -4.3258 5.6217 49 1 1.6713 -2.8551 3.4775 50 1 2.0993 -1.2333 4.1036 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591977561.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:55 Heat of formation + Delta-G solvation = -102.543982 kcal Electronic energy + Delta-G solvation = -30713.762735 eV Core-core repulsion = 26548.239403 eV Total energy + Delta-G solvation = -4165.523332 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.11383 -39.66415 -37.63493 -36.95971 -36.16980 -34.34628 -33.25879 -32.18797 -30.32634 -29.32495 -28.18577 -27.82299 -27.72075 -27.03524 -25.03286 -22.92393 -22.02120 -21.44480 -19.91413 -19.58407 -18.77710 -17.70048 -17.17646 -16.88174 -16.63893 -15.75940 -15.46471 -15.10821 -15.01914 -14.47922 -14.40711 -14.25436 -14.10214 -13.89371 -13.72932 -13.48578 -13.12775 -12.92490 -12.91467 -12.55270 -12.50525 -12.38477 -12.30012 -11.99420 -11.84144 -11.69294 -11.57331 -11.49866 -11.33074 -11.26004 -11.08126 -10.86022 -10.70171 -10.51433 -10.20169 -9.81247 -9.65765 -9.38132 -9.00626 -8.95808 -8.69397 -8.35282 -7.86134 -6.31785 -4.40477 2.43898 2.53975 2.97444 3.19738 3.27434 3.29609 3.57333 4.08950 4.20166 4.24175 4.34867 4.51988 4.59091 4.66579 4.74666 4.80658 4.95764 5.06598 5.17385 5.25832 5.30098 5.31450 5.37149 5.40319 5.49196 5.60480 5.61882 5.67997 5.68880 5.77989 5.80114 5.93298 5.96878 6.04556 6.05993 6.39481 6.45732 6.54670 6.66631 6.82579 6.89826 6.91058 7.18756 7.27600 7.51665 7.71205 7.98040 8.01383 8.40756 8.62716 8.99427 9.28498 9.40838 10.76024 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.026039 B = 0.002270 C = 0.002239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.046432 B =12332.619374 C =12505.269664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.173 3.827 3 C -0.157 4.157 4 C -0.159 4.159 5 N -0.610 5.610 6 C 0.099 3.901 7 C 0.161 3.839 8 H 0.109 0.891 9 N -0.742 5.742 10 C 0.717 3.283 11 O -0.592 6.592 12 N -0.627 5.627 13 C 0.103 3.897 14 C -0.117 4.117 15 C 0.249 3.751 16 O -0.587 6.587 17 C -0.538 4.538 18 H 0.067 0.933 19 C 0.070 3.930 20 N -0.895 5.895 21 Si 0.904 3.096 22 H -0.278 1.278 23 H -0.284 1.284 24 H -0.272 1.272 25 C 0.120 3.880 26 C -0.171 4.171 27 C 0.524 3.476 28 O -0.527 6.527 29 H 0.069 0.931 30 H 0.057 0.943 31 H 0.069 0.931 32 H 0.059 0.941 33 H 0.068 0.932 34 H 0.060 0.940 35 H 0.061 0.939 36 H 0.069 0.931 37 H 0.060 0.940 38 H 0.076 0.924 39 H 0.087 0.913 40 H 0.395 0.605 41 H 0.056 0.944 42 H 0.063 0.937 43 H 0.076 0.924 44 H 0.076 0.924 45 H 0.387 0.613 46 H 0.271 0.729 47 H 0.062 0.938 48 H 0.064 0.936 49 H 0.108 0.892 50 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.513 12.693 -16.454 22.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.089 3.911 3 C -0.215 4.215 4 C -0.217 4.217 5 N -0.346 5.346 6 C -0.025 4.025 7 C 0.053 3.947 8 H 0.127 0.873 9 N -0.400 5.400 10 C 0.419 3.581 11 O -0.470 6.470 12 N -0.364 5.364 13 C -0.021 4.021 14 C -0.155 4.155 15 C 0.208 3.792 16 O -0.397 6.397 17 C -0.576 4.576 18 H 0.085 0.915 19 C -0.133 4.133 20 N -0.534 5.534 21 Si 0.732 3.268 22 H -0.204 1.204 23 H -0.210 1.210 24 H -0.197 1.197 25 C -0.002 4.002 26 C -0.212 4.212 27 C 0.312 3.688 28 O -0.403 6.403 29 H 0.088 0.912 30 H 0.076 0.924 31 H 0.088 0.912 32 H 0.078 0.922 33 H 0.087 0.913 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.088 0.912 37 H 0.079 0.921 38 H 0.094 0.906 39 H 0.105 0.895 40 H 0.230 0.770 41 H 0.074 0.926 42 H 0.081 0.919 43 H 0.095 0.905 44 H 0.095 0.905 45 H 0.239 0.761 46 H 0.081 0.919 47 H 0.081 0.919 48 H 0.083 0.917 49 H 0.127 0.873 50 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -8.551 12.316 -16.795 22.514 hybrid contribution 0.939 -0.759 0.474 1.297 sum -7.612 11.557 -16.322 21.399 Atomic orbital electron populations 1.22100 0.92033 1.03671 1.01998 1.20488 0.95383 0.91524 0.83662 1.22190 1.01525 0.95130 1.02686 1.22198 1.01580 1.01155 0.96745 1.48416 1.06664 1.56827 1.22702 1.22220 0.82647 0.98651 0.99018 1.21427 0.86020 0.99325 0.87880 0.87278 1.45032 1.42750 1.12022 1.40192 1.15461 0.79548 0.84032 0.79029 1.90908 1.61687 1.21978 1.72438 1.47952 1.38723 1.12487 1.37227 1.22254 0.95348 0.85754 0.98710 1.22733 0.94377 0.99575 0.98767 1.19485 0.89386 0.89072 0.81265 1.86069 1.85103 1.39241 1.29286 1.21513 0.96153 1.06691 1.33223 0.91498 1.25077 0.96441 0.97274 0.94490 1.69569 1.23757 1.26164 1.33941 0.86389 0.82253 0.79483 0.78713 1.20377 1.20968 1.19712 1.22940 0.96481 0.90334 0.90477 1.22920 0.95742 1.04127 0.98453 1.20867 0.87426 0.77529 0.82936 1.90719 1.12820 1.59468 1.77334 0.91231 0.92448 0.91211 0.92151 0.91271 0.92095 0.91965 0.91241 0.92103 0.90606 0.89453 0.76975 0.92581 0.91913 0.90537 0.90537 0.76128 0.91851 0.91933 0.91727 0.87316 0.87429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.31 7.00 37.16 0.26 -1.05 16 2 C 0.17 1.38 1.20 -131.82 -0.16 1.22 16 3 C -0.16 -1.00 8.54 37.15 0.32 -0.68 16 4 C -0.16 -1.04 8.49 37.16 0.32 -0.73 16 5 N -0.61 -5.70 2.76 -157.58 -0.43 -6.13 16 6 C 0.10 0.76 6.32 -3.13 -0.02 0.74 16 7 C 0.16 1.75 3.42 -66.30 -0.23 1.53 16 8 H 0.11 1.35 7.73 -51.93 -0.40 0.95 16 9 N -0.74 -9.33 5.14 -57.08 -0.29 -9.63 16 10 C 0.72 13.15 8.49 -86.92 -0.74 12.42 16 11 O -0.59 -13.22 16.42 5.28 0.09 -13.14 16 12 N -0.63 -12.06 3.33 -176.24 -0.59 -12.64 16 13 C 0.10 1.63 6.57 -2.54 -0.02 1.62 16 14 C -0.12 -2.17 6.23 -24.59 -0.15 -2.33 16 15 C 0.25 5.79 0.86 -89.93 -0.08 5.71 16 16 O -0.59 -14.42 13.08 -35.23 -0.46 -14.88 16 17 C -0.54 -13.64 8.11 -34.44 -0.28 -13.92 16 18 H 0.07 1.66 7.76 -52.48 -0.41 1.26 16 19 C 0.07 1.80 5.28 -17.82 -0.09 1.70 16 20 N -0.90 -23.42 10.97 55.43 0.61 -22.82 16 21 Si 0.90 20.08 29.54 -169.99 -5.02 15.06 16 22 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 23 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 24 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 25 C 0.12 2.80 5.54 -3.06 -0.02 2.78 16 26 C -0.17 -2.02 6.59 -26.74 -0.18 -2.20 16 27 C 0.52 6.40 7.84 -10.86 -0.09 6.32 16 28 O -0.53 -8.02 13.99 5.56 0.08 -7.94 16 29 H 0.07 0.77 7.06 -51.93 -0.37 0.41 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.07 0.78 7.08 -51.93 -0.37 0.42 16 32 H 0.06 0.34 7.90 -51.93 -0.41 -0.07 16 33 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.06 0.47 8.14 -51.92 -0.42 0.05 16 36 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 37 H 0.06 0.35 7.21 -51.93 -0.37 -0.02 16 38 H 0.08 0.48 7.77 -51.93 -0.40 0.07 16 39 H 0.09 0.56 7.12 -51.93 -0.37 0.19 16 40 H 0.40 3.93 6.84 -40.82 -0.28 3.65 16 41 H 0.06 0.68 7.30 -51.93 -0.38 0.30 16 42 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 43 H 0.08 1.37 8.02 -51.93 -0.42 0.95 16 44 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 45 H 0.39 9.88 6.98 45.56 0.32 10.20 16 46 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 47 H 0.06 1.62 8.07 -51.93 -0.42 1.20 16 48 H 0.06 1.65 7.81 -51.93 -0.41 1.24 16 49 H 0.11 1.43 8.14 -51.93 -0.42 1.01 16 50 H 0.11 1.26 8.08 -51.93 -0.42 0.84 16 LS Contribution 393.19 15.07 5.93 5.93 Total: -1.00 -30.95 393.19 -8.87 -39.82 By element: Atomic # 1 Polarization: 20.86 SS G_CDS: -7.62 Total: 13.24 kcal Atomic # 6 Polarization: 14.29 SS G_CDS: -1.15 Total: 13.14 kcal Atomic # 7 Polarization: -50.51 SS G_CDS: -0.71 Total: -51.22 kcal Atomic # 8 Polarization: -35.67 SS G_CDS: -0.30 Total: -35.97 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.02 Total: 15.06 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -30.95 -8.87 -39.82 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591977561.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.724 kcal (2) G-P(sol) polarization free energy of solvation -30.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds