Wall clock time and date at job start Wed Apr 1 2020 00:20:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.47223 * 2 1 4 4 N 1.46504 * 109.46889 * 180.02562 * 3 2 1 5 5 C 1.46765 * 124.34647 * 269.95152 * 4 3 2 6 6 C 1.54477 * 105.46821 * 197.04012 * 5 4 3 7 7 H 1.09009 * 111.00402 * 216.45250 * 6 5 4 8 8 C 1.53003 * 110.97165 * 92.70634 * 6 5 4 9 9 N 1.46500 * 109.47025 * 181.16361 * 8 6 5 10 10 C 1.34777 * 119.99517 * 179.97438 * 9 8 6 11 11 O 1.21586 * 120.00166 * 0.02562 * 10 9 8 12 12 N 1.34780 * 120.00020 * 179.97438 * 10 9 8 13 13 C 1.47471 * 125.62668 * 359.92138 * 12 10 9 14 14 C 1.54906 * 104.81210 * 204.13821 * 13 12 10 15 15 C 1.55156 * 101.61451 * 323.04512 * 14 13 12 16 16 O 1.42907 * 110.72012 * 277.11470 * 15 14 13 17 17 C 1.50706 * 110.71850 * 154.02301 * 15 14 13 18 18 H 1.07997 * 119.99665 * 359.97438 * 17 15 14 19 19 C 1.37876 * 119.99739 * 179.97438 * 17 15 14 20 20 N 1.31508 * 120.00118 * 0.02562 * 19 17 15 21 21 Si 1.86807 * 119.99770 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.46988 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.47028 * 120.00060 * 21 19 17 24 24 H 1.48492 * 109.47097 * 239.99822 * 21 19 17 25 25 C 1.47017 * 125.65357 * 180.02562 * 12 10 9 26 26 C 1.54633 * 101.76828 * 334.58343 * 6 5 4 27 27 C 1.34411 * 124.34942 * 89.97900 * 4 3 2 28 28 O 1.21285 * 124.94306 * 359.60468 * 27 4 3 29 29 H 1.09000 * 109.46852 * 299.99567 * 1 2 3 30 30 H 1.09003 * 109.46943 * 60.00049 * 1 2 3 31 31 H 1.08994 * 109.47291 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46572 * 239.99987 * 2 1 3 33 33 H 1.08995 * 109.46905 * 120.00810 * 2 1 3 34 34 H 1.09000 * 109.46853 * 60.00433 * 3 2 1 35 35 H 1.09001 * 109.47192 * 300.00387 * 3 2 1 36 36 H 1.09002 * 110.24375 * 78.04171 * 5 4 3 37 37 H 1.08993 * 110.24899 * 316.03839 * 5 4 3 38 38 H 1.08999 * 109.46932 * 61.16118 * 8 6 5 39 39 H 1.09001 * 109.46531 * 301.16416 * 8 6 5 40 40 H 0.97000 * 120.00400 * 0.02562 * 9 8 6 41 41 H 1.09008 * 110.34870 * 85.31950 * 13 12 10 42 42 H 1.09001 * 110.40581 * 322.98986 * 13 12 10 43 43 H 1.09002 * 111.00655 * 204.94912 * 14 13 12 44 44 H 1.09002 * 111.00329 * 81.13838 * 14 13 12 45 45 H 0.96696 * 113.99691 * 180.02562 * 16 15 14 46 46 H 0.97001 * 120.00123 * 180.02562 * 20 19 17 47 47 H 1.08998 * 109.88206 * 59.48651 * 25 12 10 48 48 H 1.09007 * 109.88177 * 298.32523 * 25 12 10 49 49 H 1.09003 * 110.48190 * 143.47818 * 26 6 5 50 50 H 1.08997 * 110.48370 * 265.98992 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4424 -0.0006 5 6 4.3337 1.4432 1.2108 6 6 5.7412 1.8791 0.7469 7 1 6.5165 1.3477 1.2990 8 6 5.9176 3.3930 0.8810 9 7 7.2507 3.7731 0.4073 10 6 7.6309 5.0660 0.4308 11 8 6.8676 5.9166 0.8457 12 7 8.8575 5.4158 -0.0045 13 6 9.8794 4.4904 -0.5282 14 6 11.2275 5.2180 -0.2984 15 6 10.8387 6.6930 -0.5819 16 8 10.8637 6.9617 -1.9853 17 6 11.7533 7.6367 0.1559 18 1 12.5459 7.2456 0.7765 19 6 11.5779 8.9992 0.0385 20 7 10.6124 9.4753 -0.7168 21 14 12.7111 10.1690 0.9536 22 1 13.7076 9.3874 1.7292 23 1 13.4158 11.0396 -0.0214 24 1 11.9111 11.0097 1.8800 25 6 9.3990 6.7823 -0.0339 26 6 5.7295 1.4528 -0.7394 27 6 4.2631 1.4421 -1.1106 28 8 3.8337 1.4350 -2.2449 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 1.6768 1.9563 0.8900 35 1 1.6767 1.9564 -0.8900 36 1 4.3716 0.4430 1.6424 37 1 3.9391 2.1536 1.9372 38 1 5.8079 3.6803 1.9267 39 1 5.1609 3.9012 0.2833 40 1 7.8595 3.0946 0.0759 41 1 9.7206 4.3130 -1.5920 42 1 9.8575 3.5495 0.0215 43 1 11.9838 4.8709 -1.0025 44 1 11.5679 5.0943 0.7297 45 1 10.6284 7.8708 -2.2159 46 1 10.4893 10.4339 -0.7997 47 1 9.4107 7.1981 0.9736 48 1 8.7915 7.4077 -0.6882 49 1 6.2720 2.1763 -1.3480 50 1 6.1615 0.4587 -0.8545 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592030863.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:20:09 Heat of formation + Delta-G solvation = -116.795835 kcal Electronic energy + Delta-G solvation = -30046.407213 eV Core-core repulsion = 25880.265875 eV Total energy + Delta-G solvation = -4166.141339 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.92213 -39.61962 -37.58356 -36.86799 -35.77972 -34.29347 -33.94126 -32.16221 -31.61072 -30.00256 -28.44477 -27.82511 -26.90976 -25.67220 -24.51383 -22.58309 -22.20097 -21.16868 -19.99037 -19.59777 -19.27924 -17.71417 -17.18736 -17.11453 -16.45549 -16.00775 -15.77997 -15.30896 -15.05504 -14.94790 -14.55798 -14.26835 -14.13461 -14.03770 -13.82114 -13.29925 -13.23789 -13.05664 -12.90431 -12.81523 -12.53238 -12.41914 -12.15620 -11.92062 -11.74948 -11.72592 -11.63829 -11.42618 -11.30067 -11.10287 -11.07061 -10.81195 -10.65856 -10.48166 -10.17002 -9.99662 -9.67218 -9.34961 -9.05256 -8.91077 -8.67560 -8.31375 -7.78837 -6.29401 -4.37987 2.36069 2.66339 3.02474 3.20347 3.28918 3.32071 3.69848 3.99804 4.03458 4.25403 4.27950 4.43644 4.52253 4.56110 4.64601 4.84937 4.98129 5.01145 5.04151 5.09281 5.15499 5.24945 5.33739 5.36388 5.39525 5.46452 5.60643 5.63615 5.68955 5.69854 5.77061 5.82857 5.83899 6.01235 6.08668 6.23794 6.50040 6.65807 6.70987 6.81262 6.86657 6.96802 7.23984 7.31529 7.58849 7.73769 7.93082 8.01214 8.48728 8.65728 9.08091 9.31072 9.43975 10.78447 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.027280 B = 0.002055 C = 0.002022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.153626 B =13621.453195 C =13847.117011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.140 4.140 3 C 0.125 3.875 4 N -0.621 5.621 5 C 0.112 3.888 6 C -0.113 4.113 7 H 0.107 0.893 8 C 0.149 3.851 9 N -0.752 5.752 10 C 0.716 3.284 11 O -0.597 6.597 12 N -0.629 5.629 13 C 0.103 3.897 14 C -0.116 4.116 15 C 0.248 3.752 16 O -0.586 6.586 17 C -0.537 4.537 18 H 0.067 0.933 19 C 0.070 3.930 20 N -0.895 5.895 21 Si 0.904 3.096 22 H -0.271 1.271 23 H -0.281 1.281 24 H -0.282 1.282 25 C 0.120 3.880 26 C -0.155 4.155 27 C 0.520 3.480 28 O -0.530 6.530 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.065 0.935 33 H 0.063 0.937 34 H 0.080 0.920 35 H 0.082 0.918 36 H 0.077 0.923 37 H 0.085 0.915 38 H 0.071 0.929 39 H 0.064 0.936 40 H 0.393 0.607 41 H 0.062 0.938 42 H 0.055 0.945 43 H 0.076 0.924 44 H 0.076 0.924 45 H 0.386 0.614 46 H 0.271 0.729 47 H 0.063 0.937 48 H 0.061 0.939 49 H 0.107 0.893 50 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.781 -19.967 4.892 24.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.179 4.179 3 C 0.003 3.997 4 N -0.356 5.356 5 C -0.012 4.012 6 C -0.133 4.133 7 H 0.125 0.875 8 C 0.024 3.976 9 N -0.410 5.410 10 C 0.417 3.583 11 O -0.475 6.475 12 N -0.366 5.366 13 C -0.020 4.020 14 C -0.154 4.154 15 C 0.207 3.793 16 O -0.396 6.396 17 C -0.575 4.575 18 H 0.086 0.914 19 C -0.133 4.133 20 N -0.534 5.534 21 Si 0.732 3.268 22 H -0.196 1.196 23 H -0.207 1.207 24 H -0.208 1.208 25 C -0.002 4.002 26 C -0.195 4.195 27 C 0.307 3.693 28 O -0.407 6.407 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.098 0.902 35 H 0.100 0.900 36 H 0.096 0.904 37 H 0.103 0.897 38 H 0.089 0.911 39 H 0.083 0.917 40 H 0.228 0.772 41 H 0.081 0.919 42 H 0.074 0.926 43 H 0.094 0.906 44 H 0.094 0.906 45 H 0.238 0.762 46 H 0.081 0.919 47 H 0.082 0.918 48 H 0.080 0.920 49 H 0.125 0.875 50 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -13.638 -19.766 4.535 24.439 hybrid contribution 0.596 0.940 0.443 1.198 sum -13.042 -18.826 4.978 23.437 Atomic orbital electron populations 1.21697 0.94937 1.02054 1.02104 1.21909 0.96342 0.97107 1.02553 1.21465 0.77780 0.97045 1.03417 1.48306 1.06222 1.73774 1.07261 1.22054 0.89495 1.02071 0.87547 1.22448 0.97798 0.96796 0.96211 0.87490 1.21056 0.84406 0.91815 1.00307 1.45062 1.17161 1.07385 1.71422 1.15487 0.81431 0.82242 0.79091 1.90892 1.52940 1.49458 1.54245 1.47956 1.12245 1.11119 1.65276 1.22253 0.89424 0.92245 0.98099 1.22730 0.94715 0.96544 1.01441 1.19489 0.89136 0.90422 0.80232 1.86070 1.92645 1.36428 1.24502 1.21557 1.15716 0.90922 1.29303 0.91438 1.25084 0.95022 0.98506 0.94715 1.69583 1.30787 1.14280 1.38777 0.86337 0.80466 0.80503 0.79534 1.19588 1.20738 1.20759 1.22899 0.96637 0.79010 1.01624 1.22483 0.95044 1.04937 0.97069 1.20884 0.89229 0.74805 0.84334 1.90736 1.78686 1.50051 1.21179 0.92487 0.92398 0.92397 0.91607 0.91777 0.90209 0.89955 0.90432 0.89677 0.91064 0.91740 0.77232 0.91946 0.92624 0.90557 0.90577 0.76156 0.91932 0.91842 0.92028 0.87470 0.87414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.82 9.91 37.16 0.37 -0.45 16 2 C -0.14 -0.93 6.26 -26.73 -0.17 -1.10 16 3 C 0.12 0.96 5.93 -4.04 -0.02 0.93 16 4 N -0.62 -5.39 2.93 -172.42 -0.51 -5.90 16 5 C 0.11 0.66 6.90 -3.12 -0.02 0.63 16 6 C -0.11 -0.77 3.22 -88.98 -0.29 -1.05 16 7 H 0.11 0.49 8.14 -51.92 -0.42 0.07 16 8 C 0.15 1.63 5.02 -4.04 -0.02 1.61 16 9 N -0.75 -10.19 5.07 -65.22 -0.33 -10.52 16 10 C 0.72 14.01 8.49 -86.91 -0.74 13.28 16 11 O -0.60 -14.17 16.67 5.29 0.09 -14.09 16 12 N -0.63 -12.73 3.33 -176.21 -0.59 -13.32 16 13 C 0.10 1.73 6.57 -2.50 -0.02 1.71 16 14 C -0.12 -2.24 6.22 -24.58 -0.15 -2.39 16 15 C 0.25 5.93 0.86 -89.94 -0.08 5.86 16 16 O -0.59 -14.78 13.09 -35.23 -0.46 -15.24 16 17 C -0.54 -13.88 8.11 -34.44 -0.28 -14.16 16 18 H 0.07 1.71 7.76 -52.49 -0.41 1.31 16 19 C 0.07 1.81 5.28 -17.82 -0.09 1.72 16 20 N -0.89 -23.83 10.98 55.43 0.61 -23.22 16 21 Si 0.90 20.34 29.54 -169.99 -5.02 15.32 16 22 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 23 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 24 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 25 C 0.12 2.91 5.54 -3.07 -0.02 2.90 16 26 C -0.16 -1.30 6.24 -26.74 -0.17 -1.46 16 27 C 0.52 5.98 8.02 -10.87 -0.09 5.89 16 28 O -0.53 -8.42 17.59 5.55 0.10 -8.33 16 29 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.08 0.76 7.93 -51.93 -0.41 0.35 16 36 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 37 H 0.08 0.43 7.91 -51.93 -0.41 0.02 16 38 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.39 4.27 6.68 -40.82 -0.27 4.00 16 41 H 0.06 1.03 8.14 -51.92 -0.42 0.61 16 42 H 0.06 0.71 7.30 -51.93 -0.38 0.34 16 43 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 44 H 0.08 1.40 8.03 -51.93 -0.42 0.99 16 45 H 0.39 10.10 6.98 45.56 0.32 10.42 16 46 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 47 H 0.06 1.67 7.82 -51.93 -0.41 1.26 16 48 H 0.06 1.65 8.07 -51.93 -0.42 1.23 16 49 H 0.11 1.05 7.40 -51.93 -0.38 0.67 16 50 H 0.11 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 403.10 15.07 6.07 6.07 Total: -1.00 -33.71 403.10 -9.64 -43.34 By element: Atomic # 1 Polarization: 19.79 SS G_CDS: -7.82 Total: 11.97 kcal Atomic # 6 Polarization: 15.68 SS G_CDS: -1.78 Total: 13.90 kcal Atomic # 7 Polarization: -52.14 SS G_CDS: -0.81 Total: -52.95 kcal Atomic # 8 Polarization: -37.37 SS G_CDS: -0.28 Total: -37.65 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.32 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -33.71 -9.64 -43.34 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592030863.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.454 kcal (2) G-P(sol) polarization free energy of solvation -33.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds