Wall clock time and date at job start Tue Mar 31 2020 22:29:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47376 * 2 1 4 4 C 1.53001 * 109.47243 * 239.99518 * 2 1 3 5 5 N 1.46501 * 109.47064 * 119.99935 * 2 1 3 6 6 C 1.46769 * 124.34789 * 59.99424 * 5 2 1 7 7 C 1.54480 * 105.46938 * 162.96525 * 6 5 2 8 8 C 1.54626 * 101.76814 * 25.41893 * 7 6 5 9 9 H 1.09001 * 110.48720 * 94.00716 * 8 7 6 10 10 N 1.46498 * 110.48570 * 216.52130 * 8 7 6 11 11 C 1.34777 * 119.99828 * 204.72095 * 10 8 7 12 12 O 1.21593 * 119.99949 * 0.28071 * 11 10 8 13 13 N 1.34777 * 120.00128 * 180.27942 * 11 10 8 14 14 C 1.47427 * 125.64523 * 359.69225 * 13 11 10 15 15 C 1.55133 * 104.72081 * 155.82127 * 14 13 11 16 16 C 1.55157 * 101.48578 * 37.29249 * 15 14 13 17 17 O 1.42904 * 110.87063 * 82.77026 * 16 15 14 18 18 C 1.50695 * 110.72060 * 205.96866 * 16 15 14 19 19 H 1.08001 * 120.00067 * 354.98127 * 18 16 15 20 20 C 1.37882 * 120.00018 * 174.97496 * 18 16 15 21 21 N 1.31515 * 120.00156 * 0.02562 * 20 18 16 22 22 Si 1.86799 * 119.99822 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.47029 * 60.00458 * 22 20 18 24 24 H 1.48503 * 109.47291 * 180.02562 * 22 20 18 25 25 H 1.48497 * 109.47554 * 300.00244 * 22 20 18 26 26 C 1.47021 * 125.64915 * 180.02562 * 13 11 10 27 27 C 1.34420 * 124.35228 * 239.97742 * 5 2 1 28 28 O 1.21284 * 124.94102 * 0.42733 * 27 5 2 29 29 H 1.08995 * 109.47029 * 300.00441 * 1 2 3 30 30 H 1.09001 * 109.47048 * 60.00207 * 1 2 3 31 31 H 1.08997 * 109.47653 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47140 * 179.97438 * 3 2 1 33 33 H 1.09001 * 109.46863 * 299.99907 * 3 2 1 34 34 H 1.08998 * 109.46947 * 60.00027 * 3 2 1 35 35 H 1.08997 * 109.47302 * 300.00834 * 4 2 1 36 36 H 1.09009 * 109.46860 * 60.00466 * 4 2 1 37 37 H 1.08998 * 109.47344 * 180.02562 * 4 2 1 38 38 H 1.09002 * 110.24367 * 43.97015 * 6 5 2 39 39 H 1.08995 * 110.32379 * 282.00677 * 6 5 2 40 40 H 1.09000 * 110.97083 * 267.29530 * 7 6 5 41 41 H 1.09003 * 110.96929 * 143.53953 * 7 6 5 42 42 H 0.97001 * 120.00384 * 25.00542 * 10 8 7 43 43 H 1.09006 * 110.36477 * 274.74432 * 14 13 11 44 44 H 1.09000 * 110.36585 * 37.07226 * 14 13 11 45 45 H 1.09000 * 111.18680 * 279.19110 * 15 14 13 46 46 H 1.08999 * 110.93803 * 155.28762 * 15 14 13 47 47 H 0.96702 * 114.00134 * 184.93460 * 17 16 15 48 48 H 0.96997 * 119.99622 * 179.97438 * 21 20 18 49 49 H 1.08998 * 109.88345 * 300.43408 * 26 13 11 50 50 H 1.08997 * 109.88431 * 61.59937 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7214 -1.2492 5 7 2.0183 -0.6906 1.1962 6 6 1.7230 -2.0907 1.5226 7 6 2.7666 -2.4945 2.5876 8 6 3.1166 -1.1277 3.2203 9 1 2.5035 -0.9480 4.1035 10 7 4.5393 -1.0716 3.5652 11 6 4.9648 -0.2398 4.5365 12 8 4.1673 0.4603 5.1300 13 7 6.2745 -0.1839 4.8500 14 6 7.3437 -0.9782 4.2181 15 6 8.6357 -0.1494 4.4431 16 6 8.3943 0.4190 5.8665 17 8 8.7576 -0.5369 6.8647 18 6 9.1531 1.7061 6.0624 19 1 9.8219 2.0613 5.2923 20 6 8.9934 2.4304 7.2247 21 7 8.1793 1.9978 8.1626 22 14 9.9346 4.0256 7.4678 23 1 9.5690 4.9845 6.3945 24 1 9.5901 4.6070 8.7902 25 1 11.3933 3.7531 7.4124 26 6 6.8723 0.6740 5.8835 27 6 2.7946 -0.1235 2.1356 28 8 3.1808 1.0261 2.1165 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 3.1300 1.4424 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6766 -1.7490 -1.2492 36 1 1.6767 -0.2075 -2.1393 37 1 3.1300 -0.7218 -1.2490 38 1 1.8285 -2.7152 0.6354 39 1 0.7155 -2.1804 1.9287 40 1 3.6436 -2.9453 2.1231 41 1 2.3299 -3.1662 3.3267 42 1 5.1756 -1.6300 3.0917 43 1 7.4270 -1.9529 4.6990 44 1 7.1496 -1.0954 3.1520 45 1 8.7211 0.6536 3.7110 46 1 9.5177 -0.7896 4.4224 47 1 8.5549 -0.2583 7.7683 48 1 8.0674 2.5072 8.9804 49 1 6.6696 1.7211 5.6588 50 1 6.4640 0.4166 6.8607 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592038790.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:51 Heat of formation + Delta-G solvation = -98.753651 kcal Electronic energy + Delta-G solvation = -31245.401947 eV Core-core repulsion = 27080.042976 eV Total energy + Delta-G solvation = -4165.358971 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.04466 -39.42724 -37.46470 -36.71063 -36.08487 -34.20999 -33.40862 -32.17221 -30.23129 -29.47816 -27.91891 -27.65797 -27.58780 -26.72910 -24.79876 -22.72802 -22.50221 -21.23669 -19.78061 -19.46306 -18.69190 -17.66074 -17.03006 -16.74621 -16.67585 -15.78150 -15.23670 -15.06868 -14.85238 -14.43027 -14.34927 -14.26600 -14.08901 -13.75252 -13.46083 -13.15175 -13.00947 -12.86053 -12.83367 -12.57911 -12.34634 -12.28341 -12.09957 -12.01390 -11.88322 -11.63752 -11.47599 -11.38685 -11.27200 -11.19495 -10.97417 -10.76618 -10.63009 -10.46007 -10.14168 -9.86941 -9.55976 -9.26233 -8.81935 -8.64459 -8.62134 -8.27527 -7.70856 -6.22592 -4.30859 2.45698 2.74468 3.22228 3.28643 3.32859 3.35292 3.75329 4.15820 4.26709 4.31939 4.44455 4.57218 4.58489 4.71991 4.73167 4.77959 5.04989 5.10297 5.21852 5.30160 5.32082 5.40988 5.41857 5.47383 5.53804 5.59425 5.66382 5.71704 5.72731 5.73811 5.82604 6.02912 6.03263 6.13736 6.21459 6.52981 6.54922 6.64676 6.75467 6.95431 7.02485 7.04989 7.30644 7.37518 7.65456 7.78784 8.09163 8.23962 8.55717 8.72288 9.17436 9.34279 9.43190 10.85297 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.019312 B = 0.002711 C = 0.002576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.541372 B =10323.941161 C =10867.100043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.174 3.826 3 C -0.142 4.142 4 C -0.156 4.156 5 N -0.617 5.617 6 C 0.106 3.894 7 C -0.137 4.137 8 C 0.137 3.863 9 H 0.124 0.876 10 N -0.734 5.734 11 C 0.720 3.280 12 O -0.586 6.586 13 N -0.628 5.628 14 C 0.103 3.897 15 C -0.115 4.115 16 C 0.248 3.752 17 O -0.585 6.585 18 C -0.538 4.538 19 H 0.065 0.935 20 C 0.071 3.929 21 N -0.893 5.893 22 Si 0.904 3.096 23 H -0.275 1.275 24 H -0.285 1.285 25 H -0.275 1.275 26 C 0.124 3.876 27 C 0.502 3.498 28 O -0.498 6.498 29 H 0.060 0.940 30 H 0.067 0.933 31 H 0.058 0.942 32 H 0.069 0.931 33 H 0.056 0.944 34 H 0.070 0.930 35 H 0.058 0.942 36 H 0.068 0.932 37 H 0.060 0.940 38 H 0.079 0.921 39 H 0.073 0.927 40 H 0.087 0.913 41 H 0.099 0.901 42 H 0.395 0.605 43 H 0.062 0.938 44 H 0.054 0.946 45 H 0.077 0.923 46 H 0.075 0.925 47 H 0.382 0.618 48 H 0.270 0.730 49 H 0.064 0.936 50 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.881 -12.030 -16.901 24.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.090 3.910 3 C -0.200 4.200 4 C -0.214 4.214 5 N -0.354 5.354 6 C -0.018 4.018 7 C -0.176 4.176 8 C 0.026 3.974 9 H 0.141 0.859 10 N -0.391 5.391 11 C 0.422 3.578 12 O -0.464 6.464 13 N -0.366 5.366 14 C -0.020 4.020 15 C -0.153 4.153 16 C 0.208 3.792 17 O -0.394 6.394 18 C -0.576 4.576 19 H 0.084 0.916 20 C -0.133 4.133 21 N -0.532 5.532 22 Si 0.731 3.269 23 H -0.200 1.200 24 H -0.211 1.211 25 H -0.200 1.200 26 C 0.002 3.998 27 C 0.287 3.713 28 O -0.370 6.370 29 H 0.079 0.921 30 H 0.086 0.914 31 H 0.077 0.923 32 H 0.088 0.912 33 H 0.075 0.925 34 H 0.089 0.911 35 H 0.077 0.923 36 H 0.086 0.914 37 H 0.079 0.921 38 H 0.098 0.902 39 H 0.091 0.909 40 H 0.106 0.894 41 H 0.117 0.883 42 H 0.230 0.770 43 H 0.080 0.920 44 H 0.072 0.928 45 H 0.095 0.905 46 H 0.094 0.906 47 H 0.232 0.768 48 H 0.080 0.920 49 H 0.083 0.917 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -14.214 -11.093 -16.840 24.672 hybrid contribution 0.423 0.841 0.380 1.015 sum -13.791 -10.253 -16.460 23.796 Atomic orbital electron populations 1.22187 0.94407 1.02181 1.02693 1.20442 0.93679 0.93149 0.83682 1.22104 1.02688 0.93140 1.02034 1.22178 1.01879 1.00493 0.96882 1.48420 1.51816 1.12573 1.22610 1.21973 0.98823 0.82406 0.98554 1.22916 0.99928 0.96341 0.98388 1.21336 0.84448 0.93805 0.97802 0.85883 1.44841 1.06963 1.46668 1.40656 1.15433 0.81868 0.80412 0.80076 1.90898 1.53218 1.46357 1.55886 1.47924 1.03693 1.44351 1.40586 1.22277 0.88684 0.95328 0.95716 1.22756 0.95320 0.98882 0.98389 1.19493 0.88118 0.87146 0.84457 1.86094 1.86626 1.46922 1.19759 1.21450 1.26670 1.06115 1.03350 0.91637 1.25069 0.94488 0.98080 0.95621 1.69687 1.35954 1.39788 1.07780 0.86462 0.80117 0.82842 0.77488 1.20016 1.21095 1.20042 1.22864 0.95329 0.92992 0.88621 1.21432 0.77881 0.88643 0.83324 1.90770 1.52657 1.17266 1.76314 0.92059 0.91396 0.92320 0.91228 0.92548 0.91119 0.92327 0.91352 0.92109 0.90245 0.90892 0.89399 0.88288 0.76984 0.91954 0.92809 0.90485 0.90650 0.76763 0.91974 0.91722 0.91892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.14 8.54 37.16 0.32 -0.83 16 2 C 0.17 1.61 1.20 -131.82 -0.16 1.45 16 3 C -0.14 -1.66 7.00 37.16 0.26 -1.40 16 4 C -0.16 -1.12 8.49 37.16 0.32 -0.80 16 5 N -0.62 -6.34 2.76 -157.57 -0.43 -6.78 16 6 C 0.11 0.69 6.60 -3.12 -0.02 0.67 16 7 C -0.14 -0.98 6.87 -25.10 -0.17 -1.15 16 8 C 0.14 1.77 3.28 -67.94 -0.22 1.55 16 9 H 0.12 1.78 7.56 -51.93 -0.39 1.39 16 10 N -0.73 -11.27 5.09 -58.69 -0.30 -11.57 16 11 C 0.72 15.26 8.49 -86.92 -0.74 14.52 16 12 O -0.59 -14.90 16.32 5.28 0.09 -14.81 16 13 N -0.63 -13.53 3.32 -176.09 -0.59 -14.11 16 14 C 0.10 1.84 6.58 -2.41 -0.02 1.82 16 15 C -0.12 -2.34 6.24 -24.46 -0.15 -2.49 16 16 C 0.25 6.12 0.85 -89.94 -0.08 6.04 16 17 O -0.59 -14.78 13.08 -35.23 -0.46 -15.24 16 18 C -0.54 -14.39 8.12 -34.44 -0.28 -14.67 16 19 H 0.07 1.72 7.78 -52.49 -0.41 1.31 16 20 C 0.07 1.89 5.28 -17.82 -0.09 1.80 16 21 N -0.89 -24.36 10.97 55.43 0.61 -23.75 16 22 Si 0.90 21.02 29.54 -169.99 -5.02 16.00 16 23 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 24 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 25 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 26 C 0.12 3.13 5.24 -3.06 -0.02 3.11 16 27 C 0.50 7.36 7.48 -10.86 -0.08 7.28 16 28 O -0.50 -9.71 13.99 5.55 0.08 -9.63 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.35 7.90 -51.93 -0.41 -0.06 16 32 H 0.07 0.98 7.08 -51.93 -0.37 0.61 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.07 1.00 7.06 -51.93 -0.37 0.63 16 35 H 0.06 0.33 7.21 -51.93 -0.37 -0.04 16 36 H 0.07 0.41 8.14 -51.92 -0.42 -0.01 16 37 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 38 H 0.08 0.37 7.12 -51.93 -0.37 0.00 16 39 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.09 0.53 7.82 -51.93 -0.41 0.13 16 41 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.40 4.95 6.90 -40.82 -0.28 4.67 16 43 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 44 H 0.05 0.78 7.29 -51.93 -0.38 0.40 16 45 H 0.08 1.54 8.04 -51.93 -0.42 1.12 16 46 H 0.07 1.43 8.14 -51.93 -0.42 1.00 16 47 H 0.38 9.89 7.44 45.56 0.34 10.23 16 48 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 49 H 0.06 1.82 7.81 -51.93 -0.41 1.41 16 50 H 0.06 1.72 7.92 -51.93 -0.41 1.31 16 LS Contribution 393.16 15.07 5.92 5.92 Total: -1.00 -34.50 393.16 -8.83 -43.33 By element: Atomic # 1 Polarization: 21.31 SS G_CDS: -7.59 Total: 13.72 kcal Atomic # 6 Polarization: 18.04 SS G_CDS: -1.13 Total: 16.91 kcal Atomic # 7 Polarization: -55.50 SS G_CDS: -0.71 Total: -56.21 kcal Atomic # 8 Polarization: -39.38 SS G_CDS: -0.30 Total: -39.68 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -34.50 -8.83 -43.33 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592038790.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.422 kcal (2) G-P(sol) polarization free energy of solvation -34.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds