Wall clock time and date at job start Tue Mar 31 2020 22:29:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47376 * 2 1 4 4 C 1.53001 * 109.47243 * 239.99518 * 2 1 3 5 5 N 1.46501 * 109.47064 * 119.99935 * 2 1 3 6 6 C 1.46769 * 124.34789 * 59.99424 * 5 2 1 7 7 C 1.54480 * 105.46938 * 162.96525 * 6 5 2 8 8 C 1.54626 * 101.76814 * 25.41893 * 7 6 5 9 9 H 1.09001 * 110.48720 * 94.00716 * 8 7 6 10 10 N 1.46498 * 110.48570 * 216.52130 * 8 7 6 11 11 C 1.34777 * 119.99828 * 204.72095 * 10 8 7 12 12 O 1.21593 * 119.99949 * 0.28071 * 11 10 8 13 13 N 1.34777 * 120.00128 * 180.27942 * 11 10 8 14 14 C 1.47427 * 125.64523 * 359.69225 * 13 11 10 15 15 C 1.55133 * 104.72081 * 155.82127 * 14 13 11 16 16 C 1.55157 * 101.48578 * 37.29249 * 15 14 13 17 17 O 1.42904 * 110.87063 * 82.77026 * 16 15 14 18 18 C 1.50695 * 110.72060 * 205.96866 * 16 15 14 19 19 H 1.08001 * 120.00067 * 354.98127 * 18 16 15 20 20 C 1.37882 * 120.00018 * 174.97496 * 18 16 15 21 21 N 1.31515 * 120.00156 * 0.02562 * 20 18 16 22 22 Si 1.86799 * 119.99822 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.47029 * 60.00458 * 22 20 18 24 24 H 1.48503 * 109.47291 * 180.02562 * 22 20 18 25 25 H 1.48497 * 109.47554 * 300.00244 * 22 20 18 26 26 C 1.47021 * 125.64915 * 180.02562 * 13 11 10 27 27 C 1.34420 * 124.35228 * 239.97742 * 5 2 1 28 28 O 1.21284 * 124.94102 * 0.42733 * 27 5 2 29 29 H 1.08995 * 109.47029 * 300.00441 * 1 2 3 30 30 H 1.09001 * 109.47048 * 60.00207 * 1 2 3 31 31 H 1.08997 * 109.47653 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47140 * 179.97438 * 3 2 1 33 33 H 1.09001 * 109.46863 * 299.99907 * 3 2 1 34 34 H 1.08998 * 109.46947 * 60.00027 * 3 2 1 35 35 H 1.08997 * 109.47302 * 300.00834 * 4 2 1 36 36 H 1.09009 * 109.46860 * 60.00466 * 4 2 1 37 37 H 1.08998 * 109.47344 * 180.02562 * 4 2 1 38 38 H 1.09002 * 110.24367 * 43.97015 * 6 5 2 39 39 H 1.08995 * 110.32379 * 282.00677 * 6 5 2 40 40 H 1.09000 * 110.97083 * 267.29530 * 7 6 5 41 41 H 1.09003 * 110.96929 * 143.53953 * 7 6 5 42 42 H 0.97001 * 120.00384 * 25.00542 * 10 8 7 43 43 H 1.09006 * 110.36477 * 274.74432 * 14 13 11 44 44 H 1.09000 * 110.36585 * 37.07226 * 14 13 11 45 45 H 1.09000 * 111.18680 * 279.19110 * 15 14 13 46 46 H 1.08999 * 110.93803 * 155.28762 * 15 14 13 47 47 H 0.96702 * 114.00134 * 184.93460 * 17 16 15 48 48 H 0.96997 * 119.99622 * 179.97438 * 21 20 18 49 49 H 1.08998 * 109.88345 * 300.43408 * 26 13 11 50 50 H 1.08997 * 109.88431 * 61.59937 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7214 -1.2492 5 7 2.0183 -0.6906 1.1962 6 6 1.7230 -2.0907 1.5226 7 6 2.7666 -2.4945 2.5876 8 6 3.1166 -1.1277 3.2203 9 1 2.5035 -0.9480 4.1035 10 7 4.5393 -1.0716 3.5652 11 6 4.9648 -0.2398 4.5365 12 8 4.1673 0.4603 5.1300 13 7 6.2745 -0.1839 4.8500 14 6 7.3437 -0.9782 4.2181 15 6 8.6357 -0.1494 4.4431 16 6 8.3943 0.4190 5.8665 17 8 8.7576 -0.5369 6.8647 18 6 9.1531 1.7061 6.0624 19 1 9.8219 2.0613 5.2923 20 6 8.9934 2.4304 7.2247 21 7 8.1793 1.9978 8.1626 22 14 9.9346 4.0256 7.4678 23 1 9.5690 4.9845 6.3945 24 1 9.5901 4.6070 8.7902 25 1 11.3933 3.7531 7.4124 26 6 6.8723 0.6740 5.8835 27 6 2.7946 -0.1235 2.1356 28 8 3.1808 1.0261 2.1165 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 3.1300 1.4424 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6766 -1.7490 -1.2492 36 1 1.6767 -0.2075 -2.1393 37 1 3.1300 -0.7218 -1.2490 38 1 1.8285 -2.7152 0.6354 39 1 0.7155 -2.1804 1.9287 40 1 3.6436 -2.9453 2.1231 41 1 2.3299 -3.1662 3.3267 42 1 5.1756 -1.6300 3.0917 43 1 7.4270 -1.9529 4.6990 44 1 7.1496 -1.0954 3.1520 45 1 8.7211 0.6536 3.7110 46 1 9.5177 -0.7896 4.4224 47 1 8.5549 -0.2583 7.7683 48 1 8.0674 2.5072 8.9804 49 1 6.6696 1.7211 5.6588 50 1 6.4640 0.4166 6.8607 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592038790.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:50 Heat of formation + Delta-G solvation = -125.923759 kcal Electronic energy + Delta-G solvation = -31246.580132 eV Core-core repulsion = 27080.042976 eV Total energy + Delta-G solvation = -4166.537155 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.07341 -41.00290 -39.15100 -37.78523 -37.12666 -36.08283 -34.66031 -34.23963 -31.79840 -30.50284 -29.56838 -28.64248 -28.21197 -27.81078 -26.63520 -24.34319 -23.25096 -22.23541 -21.46357 -21.15828 -19.63422 -19.29706 -18.91183 -17.87151 -17.67364 -17.22003 -16.74569 -16.55962 -16.20886 -16.17777 -15.49536 -15.33261 -14.96358 -14.81701 -14.76662 -14.70335 -14.54427 -14.28651 -13.95020 -13.80382 -13.53325 -13.35296 -13.24702 -13.03000 -12.87019 -12.83838 -12.80378 -12.62017 -12.54363 -12.35377 -12.33195 -12.24753 -12.11611 -11.99401 -11.87359 -11.35006 -11.18009 -11.15164 -10.66422 -10.31099 -9.98488 -9.64182 -9.40732 -8.27596 -6.43251 1.26799 1.40309 1.41787 1.49281 1.78046 1.94994 2.19397 2.36609 2.98982 3.01735 3.36878 3.49558 3.77472 3.83677 3.91481 3.98110 4.02263 4.06936 4.10380 4.15641 4.36381 4.48618 4.56915 4.61521 4.64196 4.69599 4.70637 4.79196 4.83872 4.93271 4.95086 4.97877 5.03236 5.05385 5.11276 5.18561 5.22201 5.26798 5.33236 5.39041 5.39108 5.48325 5.73175 5.75442 5.99744 6.09951 6.17564 6.62796 7.01056 7.21211 7.26269 7.33724 7.53970 8.78446 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.019312 B = 0.002711 C = 0.002576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.541372 B =10323.941161 C =10867.100043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.166 3.834 3 C -0.137 4.137 4 C -0.148 4.148 5 N -0.606 5.606 6 C 0.100 3.900 7 C -0.118 4.118 8 C 0.125 3.875 9 H 0.101 0.899 10 N -0.711 5.711 11 C 0.713 3.287 12 O -0.639 6.639 13 N -0.635 5.635 14 C 0.108 3.892 15 C -0.111 4.111 16 C 0.236 3.764 17 O -0.584 6.584 18 C -0.560 4.560 19 H 0.066 0.934 20 C 0.024 3.976 21 N -0.915 5.915 22 Si 0.963 3.037 23 H -0.276 1.276 24 H -0.283 1.283 25 H -0.264 1.264 26 C 0.143 3.857 27 C 0.489 3.511 28 O -0.564 6.564 29 H 0.040 0.960 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.038 0.962 33 H 0.078 0.922 34 H 0.034 0.966 35 H 0.084 0.916 36 H 0.082 0.918 37 H 0.045 0.955 38 H 0.115 0.885 39 H 0.093 0.907 40 H 0.109 0.891 41 H 0.125 0.875 42 H 0.413 0.587 43 H 0.080 0.920 44 H 0.097 0.903 45 H 0.077 0.923 46 H 0.095 0.905 47 H 0.375 0.625 48 H 0.270 0.730 49 H 0.020 0.980 50 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.513 -15.279 -19.901 28.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.083 3.917 3 C -0.195 4.195 4 C -0.206 4.206 5 N -0.341 5.341 6 C -0.021 4.021 7 C -0.156 4.156 8 C 0.015 3.985 9 H 0.119 0.881 10 N -0.368 5.368 11 C 0.415 3.585 12 O -0.521 6.521 13 N -0.372 5.372 14 C -0.013 4.013 15 C -0.149 4.149 16 C 0.195 3.805 17 O -0.391 6.391 18 C -0.598 4.598 19 H 0.084 0.916 20 C -0.177 4.177 21 N -0.554 5.554 22 Si 0.788 3.212 23 H -0.202 1.202 24 H -0.208 1.208 25 H -0.189 1.189 26 C 0.019 3.981 27 C 0.274 3.726 28 O -0.442 6.442 29 H 0.059 0.941 30 H 0.102 0.898 31 H 0.102 0.898 32 H 0.057 0.943 33 H 0.096 0.904 34 H 0.053 0.947 35 H 0.103 0.897 36 H 0.101 0.899 37 H 0.064 0.936 38 H 0.134 0.866 39 H 0.111 0.889 40 H 0.128 0.872 41 H 0.144 0.856 42 H 0.251 0.749 43 H 0.099 0.901 44 H 0.115 0.885 45 H 0.096 0.904 46 H 0.113 0.887 47 H 0.224 0.776 48 H 0.079 0.921 49 H 0.039 0.961 50 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -14.865 -14.455 -19.927 28.757 hybrid contribution 0.532 1.859 1.271 2.314 sum -14.333 -12.596 -18.656 26.686 Atomic orbital electron populations 1.22144 0.92400 1.03753 1.02528 1.20661 0.95118 0.91594 0.84331 1.22007 1.00614 0.95597 1.01261 1.22120 1.00941 1.01795 0.95750 1.48546 1.49813 1.14079 1.21660 1.22380 0.99606 0.80174 0.99954 1.23005 1.01067 0.92862 0.98700 1.21645 0.82414 0.97375 0.97019 0.88121 1.44615 1.08613 1.44889 1.38699 1.15730 0.81261 0.80663 0.80820 1.90853 1.54607 1.48625 1.58008 1.47872 1.04761 1.44394 1.40188 1.22468 0.85977 0.94731 0.98153 1.22748 0.97507 0.99499 0.95106 1.19655 0.87080 0.87124 0.86606 1.86079 1.86569 1.46969 1.19521 1.21814 1.27018 1.07394 1.03561 0.91590 1.25835 0.95285 1.01015 0.95527 1.69799 1.36806 1.40762 1.08003 0.85534 0.79327 0.79143 0.77201 1.20190 1.20824 1.18894 1.22333 0.96349 0.91238 0.88173 1.21774 0.78274 0.88054 0.84470 1.90744 1.55548 1.19915 1.77945 0.94072 0.89840 0.89779 0.94318 0.90369 0.94695 0.89673 0.89923 0.93552 0.86645 0.88866 0.87223 0.85624 0.74905 0.90145 0.88520 0.90438 0.88681 0.77560 0.92092 0.96111 0.95207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.78 8.54 71.98 0.61 -1.17 16 2 C 0.17 2.76 1.20 3.60 0.00 2.77 16 3 C -0.14 -3.34 7.00 71.98 0.50 -2.84 16 4 C -0.15 -1.59 8.49 71.98 0.61 -0.97 16 5 N -0.61 -11.36 2.76 -771.02 -2.13 -13.48 16 6 C 0.10 0.86 6.60 86.83 0.57 1.43 16 7 C -0.12 -1.20 6.87 31.65 0.22 -0.99 16 8 C 0.13 3.16 3.28 44.98 0.15 3.30 16 9 H 0.10 3.01 7.56 -2.39 -0.02 2.99 16 10 N -0.71 -21.32 5.09 -457.85 -2.33 -23.65 16 11 C 0.71 31.18 8.49 179.05 1.52 32.70 16 12 O -0.64 -34.66 16.32 -4.01 -0.07 -34.72 16 13 N -0.64 -27.88 3.32 -829.29 -2.76 -30.64 16 14 C 0.11 3.64 6.58 86.93 0.57 4.21 16 15 C -0.11 -4.37 6.24 32.06 0.20 -4.17 16 16 C 0.24 11.86 0.85 -10.35 -0.01 11.85 16 17 O -0.58 -29.92 13.08 -148.98 -1.95 -31.87 16 18 C -0.56 -30.66 8.12 25.60 0.21 -30.45 16 19 H 0.07 3.51 7.78 -2.91 -0.02 3.49 16 20 C 0.02 1.34 5.28 84.66 0.45 1.78 16 21 N -0.91 -51.89 10.97 21.45 0.24 -51.66 16 22 Si 0.96 43.98 29.54 68.60 2.03 46.00 16 23 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 24 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 25 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 26 C 0.14 7.63 5.24 86.73 0.45 8.08 16 27 C 0.49 14.56 7.48 87.90 0.66 15.22 16 28 O -0.56 -23.63 13.99 -3.04 -0.04 -23.67 16 29 H 0.04 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.08 0.60 7.90 -2.39 -0.02 0.58 16 32 H 0.04 1.16 7.08 -2.39 -0.02 1.14 16 33 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.03 1.08 7.06 -2.39 -0.02 1.06 16 35 H 0.08 0.49 7.21 -2.39 -0.02 0.47 16 36 H 0.08 0.68 8.14 -2.38 -0.02 0.66 16 37 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 38 H 0.12 0.29 7.12 -2.39 -0.02 0.28 16 39 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 40 H 0.11 0.72 7.82 -2.39 -0.02 0.70 16 41 H 0.13 0.72 8.14 -2.39 -0.02 0.70 16 42 H 0.41 9.23 6.90 -92.71 -0.64 8.59 16 43 H 0.08 2.46 8.14 -2.38 -0.02 2.44 16 44 H 0.10 2.44 7.29 -2.39 -0.02 2.43 16 45 H 0.08 3.03 8.04 -2.39 -0.02 3.01 16 46 H 0.09 3.37 8.14 -2.39 -0.02 3.35 16 47 H 0.38 20.15 7.44 -74.06 -0.55 19.60 16 48 H 0.27 14.70 8.31 -92.71 -0.77 13.93 16 49 H 0.02 1.25 7.81 -2.39 -0.02 1.23 16 50 H 0.03 1.74 7.92 -2.39 -0.02 1.72 16 Total: -1.00 -84.84 393.16 -0.52 -85.36 By element: Atomic # 1 Polarization: 37.80 SS G_CDS: -0.24 Total: 37.57 kcal Atomic # 6 Polarization: 34.03 SS G_CDS: 6.72 Total: 40.76 kcal Atomic # 7 Polarization: -112.45 SS G_CDS: -6.98 Total: -119.43 kcal Atomic # 8 Polarization: -88.21 SS G_CDS: -2.06 Total: -90.26 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.00 kcal Total: -84.84 -0.52 -85.36 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592038790.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.559 kcal (2) G-P(sol) polarization free energy of solvation -84.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds