Wall clock time and date at job start Tue Mar 31 2020 22:43:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50692 * 120.00148 * 2 1 4 4 C 1.53004 * 109.47277 * 124.99784 * 3 2 1 5 5 O 1.42897 * 109.47307 * 180.02562 * 4 3 2 6 6 C 1.42899 * 113.99886 * 180.02562 * 5 4 3 7 7 C 1.53003 * 109.47055 * 179.97438 * 6 5 4 8 8 N 1.46498 * 109.47074 * 64.99781 * 7 6 5 9 9 C 1.34779 * 120.00154 * 179.97438 * 8 7 6 10 10 O 1.21348 * 119.99768 * 0.02562 * 9 8 7 11 11 C 1.49450 * 120.00032 * 180.02562 * 9 8 7 12 12 O 1.21356 * 119.99981 * 353.51350 * 11 9 8 13 13 N 1.34774 * 120.00149 * 173.78998 * 11 9 8 14 14 C 1.47074 * 120.88489 * 180.82986 * 13 11 9 15 15 C 1.53700 * 108.27666 * 128.75482 * 14 13 11 16 16 N 1.46902 * 109.25471 * 54.08571 * 15 14 13 17 17 C 1.46896 * 110.99756 * 172.60834 * 16 15 14 18 18 C 1.50697 * 109.47435 * 294.29945 * 17 16 15 19 19 H 1.08007 * 119.99537 * 0.02562 * 18 17 16 20 20 C 1.37877 * 120.00581 * 180.02562 * 18 17 16 21 21 N 1.31513 * 119.99549 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 120.00075 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47231 * 89.99962 * 22 20 18 24 24 H 1.48509 * 109.46798 * 209.99505 * 22 20 18 25 25 H 1.48496 * 109.47221 * 329.99568 * 22 20 18 26 26 C 1.46893 * 111.26804 * 296.75687 * 16 15 14 27 27 C 1.47082 * 120.87694 * 1.11057 * 13 11 9 28 28 H 1.08006 * 120.00213 * 0.02562 * 1 2 3 29 29 H 1.08006 * 120.00198 * 180.02562 * 1 2 3 30 30 H 1.07998 * 119.99628 * 179.97438 * 2 1 3 31 31 H 1.08997 * 109.47205 * 4.99792 * 3 2 1 32 32 H 1.09001 * 109.47121 * 244.99704 * 3 2 1 33 33 H 1.08997 * 109.46997 * 59.99880 * 4 3 2 34 34 H 1.09001 * 109.46979 * 300.00006 * 4 3 2 35 35 H 1.09000 * 109.47651 * 60.00067 * 6 5 4 36 36 H 1.08997 * 109.47471 * 299.99368 * 6 5 4 37 37 H 1.09003 * 109.47166 * 305.00465 * 7 6 5 38 38 H 1.09001 * 109.47490 * 184.99886 * 7 6 5 39 39 H 0.97003 * 119.99969 * 0.02562 * 8 7 6 40 40 H 1.08996 * 109.63545 * 248.52272 * 14 13 11 41 41 H 1.09000 * 109.62802 * 9.11122 * 14 13 11 42 42 H 1.09001 * 109.64614 * 294.08434 * 15 14 13 43 43 H 1.09001 * 109.41940 * 173.95105 * 15 14 13 44 44 H 1.09000 * 109.47800 * 54.30221 * 17 16 15 45 45 H 1.09008 * 109.46958 * 174.30245 * 17 16 15 46 46 H 0.97005 * 119.99532 * 180.02562 * 21 20 18 47 47 H 1.09006 * 109.49533 * 303.14448 * 26 16 15 48 48 H 1.08999 * 109.49656 * 183.06504 * 26 16 15 49 49 H 1.08992 * 109.62979 * 350.89963 * 27 13 11 50 50 H 1.09003 * 109.62769 * 111.48017 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 3.0350 1.3330 1.1817 5 8 3.7491 2.5708 1.1820 6 6 4.6885 2.6995 2.2511 7 6 5.3911 4.0551 2.1522 8 7 4.4153 5.1273 2.3624 9 6 4.8099 6.4154 2.3204 10 8 5.9734 6.6869 2.1080 11 6 3.8145 7.5092 2.5355 12 8 2.6339 7.2452 2.6305 13 7 4.2275 8.7895 2.6183 14 6 3.2669 9.8793 2.8477 15 6 3.7712 10.7261 4.0270 16 7 5.1488 11.1596 3.7579 17 6 5.6085 12.1142 4.7754 18 6 4.8001 13.3822 4.6764 19 1 4.0222 13.4698 3.9322 20 6 5.0533 14.4302 5.5357 21 7 6.0002 14.3232 6.4421 22 14 4.0506 16.0016 5.4133 23 1 2.8569 15.8966 6.2903 24 1 4.8820 17.1541 5.8447 25 1 3.6161 16.2033 4.0077 26 6 6.0600 10.0113 3.6636 27 6 5.6502 9.1344 2.4756 28 1 -0.5401 0.9353 -0.0004 29 1 -0.5401 -0.9353 0.0004 30 1 1.8499 -0.9353 0.0004 31 1 1.3586 2.1315 0.0895 32 1 2.6213 1.4025 -0.9314 33 1 3.7399 0.5065 1.0922 34 1 2.4772 1.2356 2.1130 35 1 5.4280 1.9016 2.1832 36 1 4.1655 2.6298 3.2048 37 1 5.8397 4.1606 1.1644 38 1 6.1691 4.1175 2.9131 39 1 3.4853 4.9103 2.5326 40 1 3.1945 10.4980 1.9533 41 1 2.2892 9.4612 3.0873 42 1 3.7487 10.1322 4.9407 43 1 3.1313 11.6005 4.1451 44 1 5.4811 11.6786 5.7664 45 1 6.6619 12.3413 4.6110 46 1 6.1781 15.0605 7.0469 47 1 6.0056 9.4274 4.5824 48 1 7.0799 10.3672 3.5182 49 1 6.2489 8.2237 2.4689 50 1 5.8024 9.6829 1.5460 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602257888.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:25 Heat of formation + Delta-G solvation = -69.799442 kcal Electronic energy + Delta-G solvation = -29042.028110 eV Core-core repulsion = 24877.924688 eV Total energy + Delta-G solvation = -4164.103422 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.90337 -39.07892 -38.45707 -37.56105 -35.93842 -35.06775 -34.15364 -32.36845 -30.78782 -30.71337 -29.07657 -28.38395 -25.89806 -24.64585 -23.51541 -23.23082 -22.54506 -21.67695 -20.74772 -20.29054 -19.39009 -17.61092 -17.35445 -17.12539 -16.66204 -16.33561 -16.01424 -15.88159 -15.57810 -15.15556 -14.74958 -14.66408 -14.44009 -14.23389 -14.11271 -13.87231 -13.71229 -13.47940 -13.34147 -13.04543 -12.76226 -12.36767 -12.25527 -12.01834 -11.87564 -11.63265 -11.50325 -11.40862 -11.23834 -10.94557 -10.78552 -10.71377 -10.57530 -10.53640 -10.16745 -9.88687 -9.87195 -9.52406 -9.34195 -8.94082 -8.56012 -8.43630 -7.28688 -6.04127 -4.05912 1.40167 1.73324 2.28903 3.07946 3.20716 3.31435 3.37838 3.42017 3.49918 4.26090 4.34810 4.41547 4.45203 4.56204 4.62090 4.72085 4.78993 4.87411 4.91230 4.92687 5.16319 5.31281 5.33681 5.35490 5.39320 5.46342 5.47727 5.54400 5.63288 5.71185 5.82211 5.87370 5.96493 6.11649 6.23537 6.32243 6.38101 6.45826 6.53492 6.61281 6.64761 6.92831 7.25470 7.30682 7.39607 7.70673 7.77219 7.99253 8.04800 8.15320 8.50979 9.01355 9.58565 11.06653 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.025927 B = 0.001735 C = 0.001657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.687751 B =16136.361766 C =16892.807171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.157 4.157 3 C -0.095 4.095 4 C 0.067 3.933 5 O -0.386 6.386 6 C 0.049 3.951 7 C 0.120 3.880 8 N -0.696 5.696 9 C 0.513 3.487 10 O -0.509 6.509 11 C 0.502 3.498 12 O -0.535 6.535 13 N -0.569 5.569 14 C 0.110 3.890 15 C 0.052 3.948 16 N -0.537 5.537 17 C 0.193 3.807 18 C -0.509 4.509 19 H 0.064 0.936 20 C 0.056 3.944 21 N -0.898 5.898 22 Si 0.898 3.102 23 H -0.281 1.281 24 H -0.287 1.287 25 H -0.273 1.273 26 C 0.042 3.958 27 C 0.059 3.941 28 H 0.099 0.901 29 H 0.099 0.901 30 H 0.110 0.890 31 H 0.077 0.923 32 H 0.081 0.919 33 H 0.051 0.949 34 H 0.052 0.948 35 H 0.070 0.930 36 H 0.060 0.940 37 H 0.083 0.917 38 H 0.091 0.909 39 H 0.416 0.584 40 H 0.079 0.921 41 H 0.090 0.910 42 H 0.025 0.975 43 H 0.099 0.901 44 H -0.009 1.009 45 H 0.032 0.968 46 H 0.261 0.739 47 H 0.024 0.976 48 H 0.082 0.918 49 H 0.149 0.851 50 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.686 -29.296 -10.272 31.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.175 4.175 3 C -0.132 4.132 4 C -0.010 4.010 5 O -0.306 6.306 6 C -0.028 4.028 7 C -0.004 4.004 8 N -0.349 5.349 9 C 0.295 3.705 10 O -0.387 6.387 11 C 0.284 3.716 12 O -0.413 6.413 13 N -0.301 5.301 14 C -0.012 4.012 15 C -0.077 4.077 16 N -0.262 5.262 17 C 0.068 3.932 18 C -0.548 4.548 19 H 0.082 0.918 20 C -0.146 4.146 21 N -0.537 5.537 22 Si 0.726 3.274 23 H -0.208 1.208 24 H -0.213 1.213 25 H -0.197 1.197 26 C -0.087 4.087 27 C -0.062 4.062 28 H 0.117 0.883 29 H 0.117 0.883 30 H 0.128 0.872 31 H 0.096 0.904 32 H 0.099 0.901 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.088 0.912 36 H 0.078 0.922 37 H 0.102 0.898 38 H 0.109 0.891 39 H 0.252 0.748 40 H 0.098 0.902 41 H 0.108 0.892 42 H 0.043 0.957 43 H 0.117 0.883 44 H 0.009 0.991 45 H 0.050 0.950 46 H 0.071 0.929 47 H 0.042 0.958 48 H 0.100 0.900 49 H 0.165 0.835 50 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -4.399 -28.749 -10.813 31.029 hybrid contribution -0.792 0.272 1.157 1.429 sum -5.191 -28.476 -9.655 30.514 Atomic orbital electron populations 1.23949 0.95927 1.02210 1.00108 1.22780 0.96033 0.97921 1.00812 1.20659 0.98000 0.96054 0.98455 1.22444 0.93949 0.86008 0.98561 1.87930 1.55039 1.37845 1.49747 1.22775 0.92459 0.96842 0.90685 1.21529 0.91268 0.83953 1.03604 1.45708 1.13832 1.04642 1.70757 1.20340 0.88447 0.84149 0.77585 1.90376 1.19078 1.81149 1.48054 1.19864 0.88282 0.83973 0.79476 1.90732 1.17121 1.82854 1.50622 1.48181 1.10469 1.04977 1.66488 1.22150 0.92218 0.86978 0.99847 1.22409 0.92760 0.98435 0.94063 1.62112 1.00502 1.12505 1.51126 1.19730 0.96589 0.89712 0.87164 1.21154 1.18443 0.98525 1.16678 0.91796 1.24992 0.95463 0.98832 0.95283 1.69962 1.31341 1.32465 1.19962 0.86493 0.79837 0.82670 0.78391 1.20755 1.21264 1.19742 1.22414 0.98003 0.92238 0.96069 1.23381 0.80058 1.03631 0.99117 0.88277 0.88264 0.87231 0.90417 0.90056 0.93094 0.93021 0.91151 0.92189 0.89829 0.89136 0.74757 0.90242 0.89190 0.95702 0.88321 0.99145 0.94977 0.92910 0.95784 0.89979 0.83522 0.90844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -0.94 14.32 29.01 0.42 -0.52 16 2 C -0.16 -0.81 9.52 -36.03 -0.34 -1.15 16 3 C -0.09 -0.56 6.03 -27.88 -0.17 -0.73 16 4 C 0.07 0.39 5.92 37.16 0.22 0.61 16 5 O -0.39 -2.97 10.29 -35.23 -0.36 -3.34 16 6 C 0.05 0.28 6.07 37.16 0.23 0.51 16 7 C 0.12 0.90 6.06 -4.04 -0.02 0.88 16 8 N -0.70 -7.11 5.49 -60.73 -0.33 -7.44 16 9 C 0.51 6.83 7.81 -11.58 -0.09 6.73 16 10 O -0.51 -7.38 13.03 5.50 0.07 -7.31 16 11 C 0.50 7.77 7.77 -11.59 -0.09 7.68 16 12 O -0.54 -9.00 15.95 5.49 0.09 -8.92 16 13 N -0.57 -9.25 3.00 -172.69 -0.52 -9.77 16 14 C 0.11 1.83 6.62 -3.37 -0.02 1.80 16 15 C 0.05 1.02 5.47 -3.46 -0.02 1.01 16 16 N -0.54 -11.56 4.62 -235.47 -1.09 -12.65 16 17 C 0.19 5.01 4.72 -4.98 -0.02 4.98 16 18 C -0.51 -14.15 8.41 -34.44 -0.29 -14.44 16 19 H 0.06 1.74 7.13 -52.48 -0.37 1.37 16 20 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 21 N -0.90 -26.59 13.29 55.43 0.74 -25.85 16 22 Si 0.90 21.52 29.54 -169.99 -5.02 16.50 16 23 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 24 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 25 H -0.27 -6.43 7.11 56.52 0.40 -6.02 16 26 C 0.04 0.77 5.62 -3.70 -0.02 0.75 16 27 C 0.06 0.94 6.35 -3.60 -0.02 0.92 16 28 H 0.10 0.50 7.84 -52.48 -0.41 0.09 16 29 H 0.10 0.40 8.06 -52.48 -0.42 -0.03 16 30 H 0.11 0.44 8.06 -52.49 -0.42 0.02 16 31 H 0.08 0.52 7.79 -51.93 -0.40 0.11 16 32 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 34 H 0.05 0.28 8.14 -51.93 -0.42 -0.15 16 35 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 36 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 37 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.42 4.06 7.96 -40.82 -0.32 3.74 16 40 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 41 H 0.09 1.43 7.07 -51.93 -0.37 1.06 16 42 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.10 2.02 6.67 -51.93 -0.35 1.68 16 44 H -0.01 -0.26 8.12 -51.93 -0.42 -0.68 16 45 H 0.03 0.89 7.97 -51.92 -0.41 0.47 16 46 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 47 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 48 H 0.08 1.46 7.99 -51.93 -0.41 1.05 16 49 H 0.15 2.26 3.93 -56.51 -0.22 2.04 16 50 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 LS Contribution 409.13 15.07 6.17 6.17 Total: -1.00 -32.35 409.13 -8.94 -41.29 By element: Atomic # 1 Polarization: 9.14 SS G_CDS: -8.33 Total: 0.80 kcal Atomic # 6 Polarization: 10.86 SS G_CDS: -0.35 Total: 10.51 kcal Atomic # 7 Polarization: -54.50 SS G_CDS: -1.20 Total: -55.70 kcal Atomic # 8 Polarization: -19.36 SS G_CDS: -0.20 Total: -19.56 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -32.35 -8.94 -41.29 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602257888.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.508 kcal (2) G-P(sol) polarization free energy of solvation -32.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds