Wall clock time and date at job start Tue Mar 31 2020 22:33:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53008 * 109.46849 * 2 1 4 4 C 1.53002 * 109.47042 * 119.99815 * 2 1 3 5 5 N 1.46500 * 109.46750 * 65.00158 * 4 2 1 6 6 C 1.46495 * 120.00022 * 269.99611 * 5 4 2 7 7 C 1.50696 * 109.47192 * 270.00247 * 6 5 4 8 8 H 1.08000 * 120.00168 * 359.97438 * 7 6 5 9 9 C 1.37882 * 120.00274 * 180.02562 * 7 6 5 10 10 N 1.31516 * 119.99772 * 359.97438 * 9 7 6 11 11 Si 1.86794 * 120.00347 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.47474 * 89.99466 * 11 9 7 13 13 H 1.48500 * 109.47196 * 209.99942 * 11 9 7 14 14 H 1.48499 * 109.47060 * 329.99711 * 11 9 7 15 15 C 1.34781 * 119.99864 * 89.99861 * 5 4 2 16 16 O 1.21281 * 120.00049 * 179.97438 * 15 5 4 17 17 C 1.50702 * 119.99969 * 359.97438 * 15 5 4 18 18 C 1.52996 * 109.47076 * 179.97438 * 17 15 5 19 19 C 1.52999 * 109.47188 * 179.97438 * 18 17 15 20 20 N 1.46506 * 109.46967 * 180.02562 * 19 18 17 21 21 C 1.34763 * 124.17431 * 90.02896 * 20 19 18 22 22 O 1.21234 * 127.16039 * 359.92588 * 21 20 19 23 23 C 1.51585 * 105.68455 * 179.97438 * 21 20 19 24 24 N 1.47309 * 103.59064 * 359.97438 * 23 21 20 25 25 C 1.46504 * 126.68818 * 180.02562 * 24 23 21 26 26 C 1.33784 * 124.17723 * 269.72544 * 20 19 18 27 27 O 1.21539 * 123.77572 * 0.03940 * 26 20 19 28 28 H 1.09003 * 109.47205 * 299.99821 * 1 2 3 29 29 H 1.09000 * 109.47548 * 59.99569 * 1 2 3 30 30 H 1.09003 * 109.47146 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47099 * 240.00447 * 2 1 3 32 32 H 1.09004 * 109.46808 * 179.97438 * 3 2 1 33 33 H 1.08998 * 109.47111 * 300.00070 * 3 2 1 34 34 H 1.09003 * 109.47070 * 60.00097 * 3 2 1 35 35 H 1.09000 * 109.47196 * 305.00280 * 4 2 1 36 36 H 1.09000 * 109.46858 * 185.00092 * 4 2 1 37 37 H 1.08996 * 109.47311 * 30.00460 * 6 5 4 38 38 H 1.09002 * 109.47028 * 150.00688 * 6 5 4 39 39 H 0.96997 * 120.00092 * 180.02562 * 10 9 7 40 40 H 1.08994 * 109.47199 * 60.00089 * 17 15 5 41 41 H 1.08997 * 109.46903 * 299.99644 * 17 15 5 42 42 H 1.09011 * 109.47030 * 59.99939 * 18 17 15 43 43 H 1.09005 * 109.47630 * 300.00244 * 18 17 15 44 44 H 1.08994 * 109.46812 * 60.00569 * 19 18 17 45 45 H 1.08997 * 109.47178 * 300.00192 * 19 18 17 46 46 H 1.09003 * 110.59995 * 118.52446 * 23 21 20 47 47 H 1.09001 * 110.60165 * 241.47120 * 23 21 20 48 48 H 1.08997 * 109.47182 * 90.00246 * 25 24 23 49 49 H 1.09005 * 109.47073 * 210.00531 * 25 24 23 50 50 H 1.08999 * 109.47477 * 329.99687 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.6524 -2.1328 1.1906 6 6 0.3746 -2.5659 1.7612 7 6 0.5716 -2.9408 3.2075 8 1 1.5509 -2.8645 3.6565 9 6 -0.4981 -3.3822 3.9572 10 7 -1.6905 -3.4756 3.4103 11 14 -0.2540 -3.8462 5.7501 12 1 -0.4675 -2.6506 6.6044 13 1 -1.2278 -4.9028 6.1249 14 1 1.1276 -4.3543 5.9462 15 6 2.4715 -3.0330 0.6115 16 8 2.1509 -4.2017 0.5633 17 6 3.7858 -2.5874 0.0240 18 6 4.5168 -3.7954 -0.5652 19 6 5.8508 -3.3429 -1.1622 20 7 6.5505 -4.4996 -1.7269 21 6 6.4133 -4.9199 -3.0000 22 8 5.7132 -4.4315 -3.8610 23 6 7.3154 -6.1310 -3.1312 24 7 7.9125 -6.2646 -1.7912 25 6 8.8719 -7.2836 -1.3581 26 6 7.4089 -5.2655 -1.0441 27 8 7.6989 -5.0814 0.1217 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5137 -0.8900 32 1 3.1300 1.4426 0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6766 1.9564 0.8900 35 1 1.6053 -0.2617 2.1370 36 1 3.1263 -0.6443 1.2952 37 1 -0.3484 -1.7532 1.6918 38 1 0.0043 -3.4298 1.2092 39 1 -2.4430 -3.7857 3.9378 40 1 4.3989 -2.1375 0.8048 41 1 3.6026 -1.8544 -0.7617 42 1 3.9037 -4.2457 -1.3460 43 1 4.7000 -4.5281 0.2208 44 1 6.4639 -2.8924 -0.3818 45 1 5.6673 -2.6104 -1.9483 46 1 6.7330 -7.0176 -3.3820 47 1 8.0882 -5.9543 -3.8792 48 1 9.8863 -6.9265 -1.5359 49 1 8.7372 -7.4807 -0.2945 50 1 8.7059 -8.2018 -1.9215 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000726710535.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:08 Heat of formation + Delta-G solvation = -111.993794 kcal Electronic energy + Delta-G solvation = -30256.421428 eV Core-core repulsion = 26090.488322 eV Total energy + Delta-G solvation = -4165.933106 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.33813 -40.88612 -39.70850 -37.88577 -37.30210 -36.94507 -35.41476 -34.29239 -34.07026 -30.77253 -29.70825 -28.05621 -27.94637 -27.15190 -26.77252 -24.92705 -23.48053 -23.02032 -21.38006 -21.16254 -19.85724 -18.70360 -18.52877 -18.25082 -17.80892 -17.53884 -17.23776 -16.76215 -16.53351 -16.18632 -15.89220 -15.60803 -15.48261 -15.40221 -15.07473 -14.92007 -14.55459 -14.44804 -14.21257 -13.73734 -13.62599 -13.44791 -13.34637 -13.27824 -13.07588 -13.02414 -12.92527 -12.86324 -12.65837 -12.49373 -12.17330 -12.09597 -11.95849 -11.93013 -11.79333 -11.50339 -11.49165 -11.31605 -10.95565 -10.63459 -10.57603 -9.97425 -9.37289 -8.23044 -6.37602 0.59415 1.06770 1.33133 1.36376 1.46684 1.85007 1.89238 2.03995 2.31005 2.46594 3.03855 3.05780 3.59638 3.67168 3.86873 3.94430 3.95446 4.07424 4.18528 4.23992 4.28422 4.35876 4.38169 4.41356 4.56504 4.59971 4.67745 4.71134 4.72875 4.85230 4.85944 4.92473 4.95376 5.05694 5.07398 5.09496 5.16301 5.17231 5.24216 5.31888 5.40735 5.46670 5.52472 5.60441 5.88947 6.06721 6.08493 6.33217 6.70244 6.82474 6.98371 7.27868 7.50744 8.83517 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.010829 B = 0.002861 C = 0.002444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2585.082329 B = 9783.753580 C =11454.383423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.107 4.107 3 C -0.136 4.136 4 C 0.109 3.891 5 N -0.599 5.599 6 C 0.261 3.739 7 C -0.544 4.544 8 H 0.050 0.950 9 C 0.007 3.993 10 N -0.928 5.928 11 Si 0.965 3.035 12 H -0.261 1.261 13 H -0.280 1.280 14 H -0.275 1.275 15 C 0.491 3.509 16 O -0.604 6.604 17 C -0.120 4.120 18 C -0.108 4.108 19 C 0.124 3.876 20 N -0.582 5.582 21 C 0.515 3.485 22 O -0.499 6.499 23 C 0.073 3.927 24 N -0.625 5.625 25 C 0.114 3.886 26 C 0.687 3.313 27 O -0.583 6.583 28 H 0.048 0.952 29 H 0.066 0.934 30 H 0.027 0.973 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.065 0.935 34 H 0.055 0.945 35 H 0.068 0.932 36 H 0.103 0.897 37 H 0.036 0.964 38 H -0.012 1.012 39 H 0.267 0.733 40 H 0.119 0.881 41 H 0.126 0.874 42 H 0.052 0.948 43 H 0.043 0.957 44 H 0.106 0.894 45 H 0.118 0.882 46 H 0.150 0.850 47 H 0.162 0.838 48 H 0.078 0.922 49 H 0.064 0.936 50 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.827 2.333 -15.524 27.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.126 4.126 3 C -0.193 4.193 4 C -0.014 4.014 5 N -0.328 5.328 6 C 0.140 3.860 7 C -0.583 4.583 8 H 0.068 0.932 9 C -0.191 4.191 10 N -0.568 5.568 11 Si 0.790 3.210 12 H -0.186 1.186 13 H -0.206 1.206 14 H -0.200 1.200 15 C 0.281 3.719 16 O -0.487 6.487 17 C -0.160 4.160 18 C -0.147 4.147 19 C 0.003 3.997 20 N -0.327 5.327 21 C 0.305 3.695 22 O -0.371 6.371 23 C -0.052 4.052 24 N -0.364 5.364 25 C -0.025 4.025 26 C 0.389 3.611 27 O -0.460 6.460 28 H 0.067 0.933 29 H 0.085 0.915 30 H 0.046 0.954 31 H 0.092 0.908 32 H 0.095 0.905 33 H 0.085 0.915 34 H 0.074 0.926 35 H 0.087 0.913 36 H 0.122 0.878 37 H 0.054 0.946 38 H 0.006 0.994 39 H 0.075 0.925 40 H 0.137 0.863 41 H 0.144 0.856 42 H 0.071 0.929 43 H 0.062 0.938 44 H 0.125 0.875 45 H 0.136 0.864 46 H 0.167 0.833 47 H 0.179 0.821 48 H 0.096 0.904 49 H 0.083 0.917 50 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 22.314 2.005 -15.284 27.121 hybrid contribution -0.926 -0.644 1.295 1.717 sum 21.388 1.361 -13.989 25.593 Atomic orbital electron populations 1.21905 0.96518 1.00508 1.01644 1.21541 0.95448 0.97917 0.97696 1.21730 1.01989 0.93193 1.02409 1.21899 1.01341 0.79319 0.98820 1.48212 1.20122 1.08761 1.55726 1.18803 0.81357 0.94156 0.91712 1.21765 0.94874 1.44710 0.96903 0.93166 1.25841 0.94720 0.95166 1.03413 1.70053 1.00640 1.47736 1.38374 0.85451 0.77763 0.78500 0.79318 1.18612 1.20574 1.20037 1.21417 0.87164 0.85252 0.78083 1.90632 1.76821 1.20283 1.60923 1.21588 0.92089 0.99465 1.02872 1.21487 0.95558 0.97760 0.99906 1.21745 0.91830 0.85619 1.00544 1.46542 1.41782 1.30441 1.13886 1.21542 0.81620 0.85582 0.80785 1.90822 1.40080 1.61723 1.44501 1.22771 0.98200 0.97586 0.86616 1.47739 1.46908 1.29910 1.11811 1.21796 0.90182 0.89174 1.01358 1.16174 0.79312 0.80893 0.84684 1.90964 1.65408 1.74181 1.15434 0.93302 0.91469 0.95411 0.90816 0.90511 0.91548 0.92618 0.91318 0.87849 0.94630 0.99420 0.92459 0.86312 0.85606 0.92925 0.93807 0.87529 0.86422 0.83299 0.82080 0.90362 0.91730 0.86794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.59 8.18 71.98 0.59 -4.01 16 2 C -0.11 -2.72 3.12 -10.79 -0.03 -2.75 16 3 C -0.14 -2.41 9.19 71.98 0.66 -1.74 16 4 C 0.11 3.37 4.70 86.38 0.41 3.77 16 5 N -0.60 -25.95 2.28 -826.16 -1.88 -27.83 16 6 C 0.26 14.50 4.23 85.63 0.36 14.86 16 7 C -0.54 -32.51 9.39 25.60 0.24 -32.27 16 8 H 0.05 2.98 7.81 -2.91 -0.02 2.96 16 9 C 0.01 0.44 5.46 84.66 0.46 0.90 16 10 N -0.93 -57.72 13.29 21.45 0.28 -57.43 16 11 Si 0.97 46.49 29.54 68.60 2.03 48.51 16 12 H -0.26 -11.72 7.11 99.48 0.71 -11.02 16 13 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 14 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 15 C 0.49 21.23 7.67 87.66 0.67 21.90 16 16 O -0.60 -33.19 15.56 -3.03 -0.05 -33.24 16 17 C -0.12 -3.36 4.25 29.85 0.13 -3.23 16 18 C -0.11 -3.18 4.83 30.59 0.15 -3.03 16 19 C 0.12 2.65 5.70 86.38 0.49 3.14 16 20 N -0.58 -12.81 2.60 -773.13 -2.01 -14.82 16 21 C 0.52 9.71 8.31 87.94 0.73 10.44 16 22 O -0.50 -12.35 17.76 -2.89 -0.05 -12.40 16 23 C 0.07 0.64 7.66 85.76 0.66 1.29 16 24 N -0.62 -8.87 3.42 -866.95 -2.96 -11.84 16 25 C 0.11 0.91 11.17 127.77 1.43 2.33 16 26 C 0.69 16.21 8.31 179.44 1.49 17.70 16 27 O -0.58 -18.54 17.15 -3.84 -0.07 -18.61 16 28 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.03 1.07 5.89 -2.39 -0.01 1.05 16 31 H 0.07 1.80 7.30 -2.39 -0.02 1.78 16 32 H 0.08 1.04 8.14 -2.38 -0.02 1.02 16 33 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.07 2.32 8.07 -2.39 -0.02 2.30 16 36 H 0.10 2.43 6.44 -2.39 -0.02 2.41 16 37 H 0.04 1.98 5.98 -2.39 -0.01 1.97 16 38 H -0.01 -0.80 7.42 -2.39 -0.02 -0.82 16 39 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 40 H 0.12 2.71 7.40 -2.39 -0.02 2.69 16 41 H 0.13 2.63 7.26 -2.39 -0.02 2.61 16 42 H 0.05 1.75 8.10 -2.38 -0.02 1.74 16 43 H 0.04 1.58 8.10 -2.38 -0.02 1.56 16 44 H 0.11 2.10 7.85 -2.39 -0.02 2.08 16 45 H 0.12 2.00 8.00 -2.39 -0.02 1.98 16 46 H 0.15 0.66 8.14 -2.39 -0.02 0.64 16 47 H 0.16 0.25 8.14 -2.39 -0.02 0.23 16 48 H 0.08 0.39 8.14 -2.39 -0.02 0.37 16 49 H 0.06 0.79 8.04 -2.38 -0.02 0.77 16 50 H 0.11 0.14 8.14 -2.39 -0.02 0.12 16 Total: -1.00 -91.51 410.36 4.64 -86.87 By element: Atomic # 1 Polarization: 10.56 SS G_CDS: 0.92 Total: 11.48 kcal Atomic # 6 Polarization: 20.87 SS G_CDS: 8.44 Total: 29.31 kcal Atomic # 7 Polarization: -105.35 SS G_CDS: -6.58 Total: -111.92 kcal Atomic # 8 Polarization: -64.09 SS G_CDS: -0.16 Total: -64.25 kcal Atomic # 14 Polarization: 46.49 SS G_CDS: 2.03 Total: 48.51 kcal Total: -91.51 4.64 -86.87 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000726710535.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.125 kcal (2) G-P(sol) polarization free energy of solvation -91.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds