Wall clock time and date at job start Tue Mar 31 2020 22:32:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52998 * 109.47057 * 2 1 4 4 C 1.53008 * 109.47091 * 119.99593 * 2 1 3 5 5 N 1.46897 * 109.47051 * 177.06758 * 4 2 1 6 6 C 1.46901 * 111.00139 * 156.74758 * 5 4 2 7 7 C 1.50704 * 109.46742 * 287.89129 * 6 5 4 8 8 H 1.07999 * 120.00251 * 4.84074 * 7 6 5 9 9 C 1.37881 * 120.00144 * 184.83390 * 7 6 5 10 10 N 1.31517 * 119.99400 * 0.02562 * 9 7 6 11 11 Si 1.86796 * 120.00178 * 180.02562 * 9 7 6 12 12 H 1.48491 * 109.47238 * 90.00023 * 11 9 7 13 13 H 1.48504 * 109.46965 * 210.00547 * 11 9 7 14 14 H 1.48504 * 109.47079 * 329.99981 * 11 9 7 15 15 C 1.46903 * 111.00046 * 280.69508 * 5 4 2 16 16 N 1.46506 * 109.46693 * 85.74388 * 15 5 4 17 17 C 1.33865 * 124.19941 * 74.48629 * 16 15 5 18 18 O 1.21539 * 123.78880 * 359.97438 * 17 16 15 19 19 N 1.34690 * 112.42383 * 180.02562 * 17 16 15 20 20 C 1.46769 * 106.38227 * 0.02562 * 19 17 16 21 21 C 1.52585 * 110.58866 * 118.71391 * 20 19 17 22 22 C 1.53196 * 109.25624 * 67.08659 * 21 20 19 23 23 O 1.43026 * 109.28420 * 56.66061 * 22 21 20 24 24 C 1.42912 * 114.21852 * 298.40160 * 23 22 21 25 25 C 1.52590 * 110.58437 * 241.28991 * 20 19 17 26 26 C 1.34946 * 124.19274 * 254.52106 * 16 15 5 27 27 O 1.21233 * 127.27551 * 359.97438 * 26 16 15 28 28 H 1.08998 * 109.47525 * 300.00328 * 1 2 3 29 29 H 1.09000 * 109.47237 * 60.01046 * 1 2 3 30 30 H 1.09002 * 109.46864 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47525 * 239.99672 * 2 1 3 32 32 H 1.09003 * 109.47276 * 184.99481 * 3 2 1 33 33 H 1.09002 * 109.47225 * 304.99700 * 3 2 1 34 34 H 1.08997 * 109.47276 * 64.99764 * 3 2 1 35 35 H 1.08999 * 109.47117 * 57.06797 * 4 2 1 36 36 H 1.08996 * 109.46775 * 297.06503 * 4 2 1 37 37 H 1.09004 * 109.47236 * 47.88671 * 6 5 4 38 38 H 1.08994 * 109.47369 * 167.89457 * 6 5 4 39 39 H 0.97000 * 119.99525 * 179.97438 * 10 9 7 40 40 H 1.08999 * 109.47384 * 325.74427 * 15 5 4 41 41 H 1.09002 * 109.47339 * 205.74167 * 15 5 4 42 42 H 0.97005 * 126.80942 * 179.97438 * 19 17 16 43 43 H 1.09002 * 109.50944 * 187.02932 * 21 20 19 44 44 H 1.08992 * 109.51112 * 307.13444 * 21 20 19 45 45 H 1.09001 * 109.49700 * 176.67563 * 22 21 20 46 46 H 1.09002 * 109.49015 * 296.74639 * 22 21 20 47 47 H 1.09002 * 109.49854 * 301.66912 * 24 23 22 48 48 H 1.09010 * 109.51323 * 181.60522 * 24 23 22 49 49 H 1.08999 * 109.51165 * 52.80023 * 25 20 19 50 50 H 1.08998 * 109.51589 * 172.91297 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 1.2494 5 7 3.5072 -0.7829 1.2145 6 6 4.0597 -0.9433 2.5661 7 6 3.9043 0.3472 3.3287 8 1 3.3723 1.1759 2.8852 9 6 4.4412 0.4701 4.5927 10 7 5.0894 -0.5389 5.1326 11 14 4.2480 2.0695 5.5382 12 1 3.0008 2.0214 6.3426 13 1 5.4125 2.2546 6.4409 14 1 4.1772 3.2040 4.5826 15 6 3.9680 -1.8586 0.3264 16 7 4.0355 -1.3604 -1.0497 17 6 4.9874 -0.5372 -1.5060 18 8 5.8995 -0.1143 -0.8231 19 7 4.8202 -0.2293 -2.8065 20 6 3.6131 -0.9381 -3.2479 21 6 2.5503 0.0519 -3.7154 22 6 3.0340 0.7469 -4.9921 23 8 3.3325 -0.2403 -5.9832 24 6 4.3732 -1.1470 -5.6127 25 6 3.9478 -1.9244 -4.3630 26 6 3.1455 -1.6740 -2.0143 27 8 2.1753 -2.3939 -1.9123 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5137 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 3.1263 1.4438 -0.0895 33 1 1.6053 1.9815 -0.8419 34 1 1.7515 1.9298 0.9313 35 1 1.6343 -1.7326 1.2761 36 1 1.7202 -0.1778 2.1385 37 1 3.5249 -1.7387 3.0852 38 1 5.1168 -1.2002 2.4984 39 1 5.4674 -0.4524 6.0217 40 1 3.2705 -2.6947 0.3763 41 1 4.9570 -2.1912 0.6414 42 1 5.3850 0.3473 -3.3445 43 1 1.6217 -0.4808 -3.9203 44 1 2.3792 0.7964 -2.9380 45 1 2.2535 1.4115 -5.3625 46 1 3.9314 1.3256 -4.7735 47 1 5.2844 -0.5878 -5.4005 48 1 4.5565 -1.8445 -6.4301 49 1 4.7630 -2.5731 -4.0427 50 1 3.0695 -2.5286 -4.5904 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000727818018.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:58 Heat of formation + Delta-G solvation = -78.173975 kcal Electronic energy + Delta-G solvation = -32857.844371 eV Core-core repulsion = 28693.377802 eV Total energy + Delta-G solvation = -4164.466569 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.70728 -39.36073 -38.50215 -37.42385 -35.99108 -34.74439 -33.78947 -32.26898 -31.67503 -31.44608 -27.69250 -26.74003 -26.65830 -25.60041 -24.20311 -23.96853 -23.00610 -21.16968 -20.58179 -20.25748 -19.52177 -17.94946 -16.97748 -16.73683 -16.46800 -16.34680 -15.77007 -15.59944 -15.32736 -15.08507 -15.04038 -14.68691 -14.37952 -13.98648 -13.84173 -13.79198 -13.51986 -13.47137 -12.90291 -12.83013 -12.53313 -12.28237 -11.88455 -11.80085 -11.62787 -11.58561 -11.46929 -11.20263 -11.13033 -10.88939 -10.77138 -10.65395 -10.50630 -10.33047 -10.23412 -9.96623 -9.86556 -9.70658 -9.56080 -9.47560 -9.25979 -8.43508 -7.46526 -6.02225 -4.02603 1.67837 2.34984 3.05988 3.27200 3.32668 3.39147 3.43964 3.45882 3.85180 4.12161 4.22093 4.42537 4.47626 4.74038 4.76000 4.89024 4.91571 5.10156 5.16523 5.25004 5.30571 5.31016 5.34936 5.40416 5.52706 5.58127 5.60047 5.63144 5.69149 5.80644 5.85761 5.92814 6.01727 6.15875 6.26673 6.36256 6.43674 6.51667 6.74043 6.78864 6.81198 6.88815 7.10519 7.21541 7.30821 7.45796 7.77155 8.01761 8.11537 8.35858 8.46875 9.03170 9.60824 11.08648 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.017178 B = 0.003657 C = 0.003496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1629.579834 B = 7655.382684 C = 8008.229597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.097 4.097 3 C -0.131 4.131 4 C 0.065 3.935 5 N -0.537 5.537 6 C 0.201 3.799 7 C -0.501 4.501 8 H 0.064 0.936 9 C 0.056 3.944 10 N -0.899 5.899 11 Si 0.897 3.103 12 H -0.282 1.282 13 H -0.287 1.287 14 H -0.273 1.273 15 C 0.280 3.720 16 N -0.561 5.561 17 C 0.705 3.295 18 O -0.516 6.516 19 N -0.730 5.730 20 C 0.122 3.878 21 C -0.152 4.152 22 C 0.065 3.935 23 O -0.379 6.379 24 C 0.065 3.935 25 C -0.150 4.150 26 C 0.537 3.463 27 O -0.469 6.469 28 H 0.054 0.946 29 H 0.047 0.953 30 H 0.050 0.950 31 H 0.058 0.942 32 H 0.063 0.937 33 H 0.033 0.967 34 H 0.054 0.946 35 H 0.025 0.975 36 H 0.087 0.913 37 H -0.007 1.007 38 H 0.038 0.962 39 H 0.261 0.739 40 H 0.071 0.929 41 H 0.097 0.903 42 H 0.433 0.567 43 H 0.096 0.904 44 H 0.090 0.910 45 H 0.104 0.896 46 H 0.054 0.946 47 H 0.054 0.946 48 H 0.103 0.897 49 H 0.086 0.914 50 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.537 -1.318 -21.950 22.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.116 4.116 3 C -0.189 4.189 4 C -0.063 4.063 5 N -0.262 5.262 6 C 0.077 3.923 7 C -0.539 4.539 8 H 0.082 0.918 9 C -0.145 4.145 10 N -0.538 5.538 11 Si 0.725 3.275 12 H -0.208 1.208 13 H -0.213 1.213 14 H -0.198 1.198 15 C 0.069 3.931 16 N -0.308 5.308 17 C 0.405 3.595 18 O -0.386 6.386 19 N -0.397 5.397 20 C 0.030 3.970 21 C -0.190 4.190 22 C -0.012 4.012 23 O -0.297 6.297 24 C -0.012 4.012 25 C -0.189 4.189 26 C 0.323 3.677 27 O -0.339 6.339 28 H 0.073 0.927 29 H 0.066 0.934 30 H 0.069 0.931 31 H 0.076 0.924 32 H 0.082 0.918 33 H 0.052 0.948 34 H 0.073 0.927 35 H 0.043 0.957 36 H 0.105 0.895 37 H 0.011 0.989 38 H 0.056 0.944 39 H 0.071 0.929 40 H 0.089 0.911 41 H 0.115 0.885 42 H 0.277 0.723 43 H 0.114 0.886 44 H 0.109 0.891 45 H 0.122 0.878 46 H 0.073 0.927 47 H 0.072 0.928 48 H 0.121 0.879 49 H 0.104 0.896 50 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -4.375 -1.157 -21.521 21.992 hybrid contribution 0.064 0.375 1.070 1.135 sum -4.310 -0.782 -20.452 20.916 Atomic orbital electron populations 1.21769 0.95880 1.01194 1.01132 1.21294 0.94554 0.97123 0.98601 1.21660 1.01938 0.94976 1.00282 1.22207 0.87665 0.98088 0.98309 1.61608 1.07996 1.42758 1.13811 1.19739 0.95059 0.97047 0.80439 1.21075 1.34779 0.98846 0.99223 0.91822 1.24951 0.95255 0.96655 0.97616 1.69948 1.36807 1.30845 1.16225 0.86505 0.77452 0.83824 0.79688 1.20818 1.21280 1.19814 1.22170 1.02420 0.91352 0.77196 1.46889 1.25713 1.45014 1.13173 1.15927 0.82458 0.79080 0.82029 1.91070 1.32993 1.55248 1.59255 1.45619 1.29586 1.53308 1.11164 1.20947 0.87515 0.93822 0.94687 1.22367 0.98102 0.99045 0.99527 1.22607 1.00735 0.90221 0.87601 1.87987 1.55974 1.44162 1.41595 1.22574 0.89916 0.92188 0.96521 1.22347 1.04351 0.97770 0.94447 1.20391 0.81944 0.80141 0.85219 1.90791 1.24728 1.35351 1.83067 0.92731 0.93377 0.93116 0.92353 0.91751 0.94810 0.92719 0.95700 0.89488 0.98883 0.94438 0.92929 0.91146 0.88492 0.72302 0.88563 0.89107 0.87793 0.92727 0.92787 0.87883 0.89561 0.88485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 9.19 37.15 0.34 -1.65 16 2 C -0.10 -1.57 2.86 -90.62 -0.26 -1.83 16 3 C -0.13 -2.17 9.00 37.16 0.33 -1.84 16 4 C 0.07 1.25 4.23 -3.82 -0.02 1.24 16 5 N -0.54 -11.26 3.92 -239.97 -0.94 -12.20 16 6 C 0.20 5.12 4.68 -4.97 -0.02 5.09 16 7 C -0.50 -13.88 8.40 -34.44 -0.29 -14.17 16 8 H 0.06 1.76 7.60 -52.49 -0.40 1.36 16 9 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 10 N -0.90 -26.56 13.29 55.43 0.74 -25.82 16 11 Si 0.90 21.83 29.54 -169.99 -5.02 16.81 16 12 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 13 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 14 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 15 C 0.28 5.09 5.51 -63.31 -0.35 4.74 16 16 N -0.56 -8.90 2.29 -124.11 -0.28 -9.18 16 17 C 0.70 11.27 8.63 -87.81 -0.76 10.51 16 18 O -0.52 -10.59 17.67 5.33 0.09 -10.49 16 19 N -0.73 -8.04 5.38 -53.84 -0.29 -8.33 16 20 C 0.12 1.25 0.84 -133.07 -0.11 1.14 16 21 C -0.15 -1.37 5.18 -26.84 -0.14 -1.51 16 22 C 0.07 0.47 6.75 37.26 0.25 0.72 16 23 O -0.38 -3.16 10.75 -35.23 -0.38 -3.54 16 24 C 0.06 0.43 6.74 37.26 0.25 0.68 16 25 C -0.15 -1.21 5.19 -26.84 -0.14 -1.35 16 26 C 0.54 7.46 4.49 -10.73 -0.05 7.41 16 27 O -0.47 -7.34 16.76 5.60 0.09 -7.25 16 28 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 29 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.06 0.93 3.30 -51.93 -0.17 0.76 16 32 H 0.06 1.23 7.84 -51.93 -0.41 0.82 16 33 H 0.03 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.02 0.47 7.55 -51.93 -0.39 0.07 16 36 H 0.09 1.83 6.97 -51.93 -0.36 1.47 16 37 H -0.01 -0.17 8.05 -51.93 -0.42 -0.59 16 38 H 0.04 1.04 7.61 -51.93 -0.40 0.64 16 39 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 40 H 0.07 1.21 7.09 -51.93 -0.37 0.85 16 41 H 0.10 1.82 7.47 -51.93 -0.39 1.43 16 42 H 0.43 3.74 8.04 -40.82 -0.33 3.41 16 43 H 0.10 0.89 8.14 -51.93 -0.42 0.46 16 44 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 45 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 46 H 0.05 0.35 7.56 -51.93 -0.39 -0.04 16 47 H 0.05 0.31 7.56 -51.93 -0.39 -0.08 16 48 H 0.10 0.53 8.14 -51.92 -0.42 0.10 16 49 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 50 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 392.55 15.07 5.92 5.92 Total: -1.00 -32.83 392.55 -9.33 -42.15 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: -8.20 Total: 1.26 kcal Atomic # 6 Polarization: 11.74 SS G_CDS: -1.05 Total: 10.68 kcal Atomic # 7 Polarization: -54.76 SS G_CDS: -0.78 Total: -55.54 kcal Atomic # 8 Polarization: -21.09 SS G_CDS: -0.19 Total: -21.28 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -32.83 -9.33 -42.15 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000727818018.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.021 kcal (2) G-P(sol) polarization free energy of solvation -32.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds