Wall clock time and date at job start Tue Mar 31 2020 22:32:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52998 * 109.47057 * 2 1 4 4 C 1.53008 * 109.47091 * 119.99593 * 2 1 3 5 5 N 1.46897 * 109.47051 * 177.06758 * 4 2 1 6 6 C 1.46901 * 111.00139 * 156.74758 * 5 4 2 7 7 C 1.50704 * 109.46742 * 287.89129 * 6 5 4 8 8 H 1.07999 * 120.00251 * 4.84074 * 7 6 5 9 9 C 1.37881 * 120.00144 * 184.83390 * 7 6 5 10 10 N 1.31517 * 119.99400 * 0.02562 * 9 7 6 11 11 Si 1.86796 * 120.00178 * 180.02562 * 9 7 6 12 12 H 1.48491 * 109.47238 * 90.00023 * 11 9 7 13 13 H 1.48504 * 109.46965 * 210.00547 * 11 9 7 14 14 H 1.48504 * 109.47079 * 329.99981 * 11 9 7 15 15 C 1.46903 * 111.00046 * 280.69508 * 5 4 2 16 16 N 1.46506 * 109.46693 * 85.74388 * 15 5 4 17 17 C 1.33865 * 124.19941 * 74.48629 * 16 15 5 18 18 O 1.21539 * 123.78880 * 359.97438 * 17 16 15 19 19 N 1.34690 * 112.42383 * 180.02562 * 17 16 15 20 20 C 1.46769 * 106.38227 * 0.02562 * 19 17 16 21 21 C 1.52585 * 110.58866 * 118.71391 * 20 19 17 22 22 C 1.53196 * 109.25624 * 67.08659 * 21 20 19 23 23 O 1.43026 * 109.28420 * 56.66061 * 22 21 20 24 24 C 1.42912 * 114.21852 * 298.40160 * 23 22 21 25 25 C 1.52590 * 110.58437 * 241.28991 * 20 19 17 26 26 C 1.34946 * 124.19274 * 254.52106 * 16 15 5 27 27 O 1.21233 * 127.27551 * 359.97438 * 26 16 15 28 28 H 1.08998 * 109.47525 * 300.00328 * 1 2 3 29 29 H 1.09000 * 109.47237 * 60.01046 * 1 2 3 30 30 H 1.09002 * 109.46864 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47525 * 239.99672 * 2 1 3 32 32 H 1.09003 * 109.47276 * 184.99481 * 3 2 1 33 33 H 1.09002 * 109.47225 * 304.99700 * 3 2 1 34 34 H 1.08997 * 109.47276 * 64.99764 * 3 2 1 35 35 H 1.08999 * 109.47117 * 57.06797 * 4 2 1 36 36 H 1.08996 * 109.46775 * 297.06503 * 4 2 1 37 37 H 1.09004 * 109.47236 * 47.88671 * 6 5 4 38 38 H 1.08994 * 109.47369 * 167.89457 * 6 5 4 39 39 H 0.97000 * 119.99525 * 179.97438 * 10 9 7 40 40 H 1.08999 * 109.47384 * 325.74427 * 15 5 4 41 41 H 1.09002 * 109.47339 * 205.74167 * 15 5 4 42 42 H 0.97005 * 126.80942 * 179.97438 * 19 17 16 43 43 H 1.09002 * 109.50944 * 187.02932 * 21 20 19 44 44 H 1.08992 * 109.51112 * 307.13444 * 21 20 19 45 45 H 1.09001 * 109.49700 * 176.67563 * 22 21 20 46 46 H 1.09002 * 109.49015 * 296.74639 * 22 21 20 47 47 H 1.09002 * 109.49854 * 301.66912 * 24 23 22 48 48 H 1.09010 * 109.51323 * 181.60522 * 24 23 22 49 49 H 1.08999 * 109.51165 * 52.80023 * 25 20 19 50 50 H 1.08998 * 109.51589 * 172.91297 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 1.2494 5 7 3.5072 -0.7829 1.2145 6 6 4.0597 -0.9433 2.5661 7 6 3.9043 0.3472 3.3287 8 1 3.3723 1.1759 2.8852 9 6 4.4412 0.4701 4.5927 10 7 5.0894 -0.5389 5.1326 11 14 4.2480 2.0695 5.5382 12 1 3.0008 2.0214 6.3426 13 1 5.4125 2.2546 6.4409 14 1 4.1772 3.2040 4.5826 15 6 3.9680 -1.8586 0.3264 16 7 4.0355 -1.3604 -1.0497 17 6 4.9874 -0.5372 -1.5060 18 8 5.8995 -0.1143 -0.8231 19 7 4.8202 -0.2293 -2.8065 20 6 3.6131 -0.9381 -3.2479 21 6 2.5503 0.0519 -3.7154 22 6 3.0340 0.7469 -4.9921 23 8 3.3325 -0.2403 -5.9832 24 6 4.3732 -1.1470 -5.6127 25 6 3.9478 -1.9244 -4.3630 26 6 3.1455 -1.6740 -2.0143 27 8 2.1753 -2.3939 -1.9123 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5137 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 3.1263 1.4438 -0.0895 33 1 1.6053 1.9815 -0.8419 34 1 1.7515 1.9298 0.9313 35 1 1.6343 -1.7326 1.2761 36 1 1.7202 -0.1778 2.1385 37 1 3.5249 -1.7387 3.0852 38 1 5.1168 -1.2002 2.4984 39 1 5.4674 -0.4524 6.0217 40 1 3.2705 -2.6947 0.3763 41 1 4.9570 -2.1912 0.6414 42 1 5.3850 0.3473 -3.3445 43 1 1.6217 -0.4808 -3.9203 44 1 2.3792 0.7964 -2.9380 45 1 2.2535 1.4115 -5.3625 46 1 3.9314 1.3256 -4.7735 47 1 5.2844 -0.5878 -5.4005 48 1 4.5565 -1.8445 -6.4301 49 1 4.7630 -2.5731 -4.0427 50 1 3.0695 -2.5286 -4.5904 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000727818018.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:57 Heat of formation + Delta-G solvation = -101.387272 kcal Electronic energy + Delta-G solvation = -32858.850975 eV Core-core repulsion = 28693.377802 eV Total energy + Delta-G solvation = -4165.473173 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.84747 -40.19107 -39.78129 -38.88664 -37.18143 -36.00034 -35.44019 -34.12338 -32.42960 -32.27726 -29.51961 -28.13492 -27.97718 -26.70873 -25.68574 -24.82166 -24.16272 -22.89586 -21.69331 -21.29210 -20.91410 -19.12525 -18.49751 -17.97399 -17.77919 -17.00740 -16.90452 -16.73643 -16.71993 -16.62889 -16.23394 -15.85026 -15.78982 -15.34288 -15.05952 -14.92487 -14.88551 -14.64980 -14.28741 -13.94113 -13.68832 -13.47159 -13.42580 -13.21474 -12.99317 -12.78592 -12.69009 -12.61597 -12.42182 -12.28537 -12.20642 -12.07494 -11.86818 -11.73753 -11.54497 -11.49325 -11.37142 -11.14895 -10.94431 -10.61388 -10.52367 -10.50267 -9.22357 -8.20578 -6.28959 0.51639 1.11539 1.38507 1.40482 1.51554 1.97417 2.07354 2.39464 2.80465 2.93479 3.08399 3.18030 3.32528 3.47315 3.75717 3.85797 3.90121 4.07962 4.15570 4.19729 4.22242 4.25625 4.30642 4.45170 4.50486 4.54393 4.58997 4.63457 4.76120 4.80129 4.81698 4.83242 4.93092 4.98391 5.01047 5.03429 5.04900 5.12735 5.15833 5.23808 5.43312 5.52689 5.63750 5.79648 5.97008 6.05976 6.20792 6.27230 6.30151 6.47286 6.83419 7.14522 7.39103 8.90358 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.017178 B = 0.003657 C = 0.003496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1629.579834 B = 7655.382684 C = 8008.229597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.091 4.091 3 C -0.122 4.122 4 C 0.068 3.932 5 N -0.541 5.541 6 C 0.219 3.781 7 C -0.513 4.513 8 H 0.060 0.940 9 C 0.004 3.996 10 N -0.933 5.933 11 Si 0.965 3.035 12 H -0.270 1.270 13 H -0.283 1.283 14 H -0.269 1.269 15 C 0.283 3.717 16 N -0.566 5.566 17 C 0.704 3.296 18 O -0.569 6.569 19 N -0.703 5.703 20 C 0.129 3.871 21 C -0.149 4.149 22 C 0.067 3.933 23 O -0.389 6.389 24 C 0.065 3.935 25 C -0.146 4.146 26 C 0.533 3.467 27 O -0.484 6.484 28 H 0.053 0.947 29 H 0.072 0.928 30 H 0.051 0.949 31 H 0.064 0.936 32 H 0.034 0.966 33 H 0.066 0.934 34 H 0.039 0.961 35 H 0.026 0.974 36 H 0.063 0.937 37 H -0.027 1.027 38 H 0.006 0.994 39 H 0.264 0.736 40 H 0.080 0.920 41 H 0.083 0.917 42 H 0.447 0.553 43 H 0.099 0.901 44 H 0.084 0.916 45 H 0.121 0.879 46 H 0.065 0.935 47 H 0.066 0.934 48 H 0.123 0.877 49 H 0.090 0.910 50 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.815 -0.053 -24.653 25.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.110 4.110 3 C -0.179 4.179 4 C -0.060 4.060 5 N -0.266 5.266 6 C 0.093 3.907 7 C -0.551 4.551 8 H 0.078 0.922 9 C -0.194 4.194 10 N -0.574 5.574 11 Si 0.790 3.210 12 H -0.196 1.196 13 H -0.208 1.208 14 H -0.194 1.194 15 C 0.072 3.928 16 N -0.312 5.312 17 C 0.404 3.596 18 O -0.443 6.443 19 N -0.370 5.370 20 C 0.039 3.961 21 C -0.187 4.187 22 C -0.009 4.009 23 O -0.308 6.308 24 C -0.011 4.011 25 C -0.185 4.185 26 C 0.322 3.678 27 O -0.356 6.356 28 H 0.073 0.927 29 H 0.091 0.909 30 H 0.070 0.930 31 H 0.082 0.918 32 H 0.053 0.947 33 H 0.085 0.915 34 H 0.058 0.942 35 H 0.044 0.956 36 H 0.082 0.918 37 H -0.009 1.009 38 H 0.024 0.976 39 H 0.073 0.927 40 H 0.098 0.902 41 H 0.101 0.899 42 H 0.294 0.706 43 H 0.117 0.883 44 H 0.102 0.898 45 H 0.139 0.861 46 H 0.083 0.917 47 H 0.084 0.916 48 H 0.141 0.859 49 H 0.108 0.892 50 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -5.686 0.108 -24.316 24.972 hybrid contribution 0.437 -0.108 1.845 1.899 sum -5.249 0.001 -22.471 23.076 Atomic orbital electron populations 1.21725 0.93599 1.01699 1.02383 1.21261 0.96341 0.96507 0.96905 1.21556 1.00098 0.95377 1.00909 1.22222 0.86398 0.98256 0.99131 1.61525 1.09162 1.44155 1.11783 1.19319 0.93093 0.95606 0.82682 1.21339 1.34646 0.99381 0.99776 0.92197 1.25824 0.94830 1.00121 0.98601 1.70071 1.37673 1.32912 1.16695 0.85446 0.77811 0.79497 0.78252 1.19573 1.20830 1.19363 1.21967 1.01772 0.90970 0.78124 1.46769 1.26589 1.45369 1.12489 1.16049 0.81684 0.78698 0.83134 1.91038 1.35036 1.57282 1.60941 1.45453 1.29716 1.52592 1.09235 1.21100 0.87311 0.94306 0.93393 1.22401 0.97531 0.98451 1.00341 1.22697 1.01785 0.90040 0.86405 1.87990 1.56462 1.44477 1.41886 1.22717 0.89875 0.92338 0.96200 1.22397 1.04707 0.97340 0.94069 1.21005 0.81217 0.79835 0.85753 1.90782 1.25277 1.36035 1.83469 0.92742 0.90868 0.93016 0.91822 0.94689 0.91498 0.94170 0.95597 0.91843 1.00899 0.97599 0.92727 0.90211 0.89895 0.70556 0.88303 0.89787 0.86124 0.91662 0.91575 0.85947 0.89165 0.88274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.54 9.19 71.98 0.66 -2.88 16 2 C -0.09 -2.89 2.86 -10.79 -0.03 -2.92 16 3 C -0.12 -3.94 9.00 71.98 0.65 -3.29 16 4 C 0.07 2.66 4.23 86.31 0.36 3.03 16 5 N -0.54 -23.81 3.92 -913.13 -3.58 -27.39 16 6 C 0.22 11.80 4.68 85.56 0.40 12.20 16 7 C -0.51 -29.53 8.40 25.60 0.21 -29.32 16 8 H 0.06 3.42 7.60 -2.91 -0.02 3.40 16 9 C 0.00 0.25 5.46 84.66 0.46 0.71 16 10 N -0.93 -56.82 13.29 21.45 0.28 -56.54 16 11 Si 0.97 45.42 29.54 68.60 2.03 47.44 16 12 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 13 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 14 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 15 C 0.28 10.81 5.51 170.80 0.94 11.75 16 16 N -0.57 -18.13 2.29 -783.69 -1.79 -19.92 16 17 C 0.70 22.62 8.63 179.37 1.55 24.17 16 18 O -0.57 -24.17 17.67 -3.84 -0.07 -24.24 16 19 N -0.70 -14.39 5.38 -442.59 -2.38 -16.77 16 20 C 0.13 2.39 0.84 2.65 0.00 2.40 16 21 C -0.15 -2.24 5.18 30.52 0.16 -2.08 16 22 C 0.07 0.73 6.75 72.05 0.49 1.21 16 23 O -0.39 -5.04 10.75 -148.98 -1.60 -6.64 16 24 C 0.07 0.63 6.74 72.05 0.49 1.12 16 25 C -0.15 -1.96 5.19 30.53 0.16 -1.80 16 26 C 0.53 14.27 4.49 87.75 0.39 14.66 16 27 O -0.48 -14.58 16.76 -2.88 -0.05 -14.63 16 28 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.06 1.96 3.30 -2.39 -0.01 1.95 16 32 H 0.03 1.32 7.84 -2.39 -0.02 1.31 16 33 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.03 1.00 7.55 -2.39 -0.02 0.98 16 36 H 0.06 2.78 6.97 -2.39 -0.02 2.76 16 37 H -0.03 -1.51 8.05 -2.39 -0.02 -1.53 16 38 H 0.01 0.35 7.61 -2.39 -0.02 0.33 16 39 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 40 H 0.08 2.86 7.09 -2.39 -0.02 2.84 16 41 H 0.08 3.36 7.47 -2.39 -0.02 3.34 16 42 H 0.45 6.71 8.04 -92.70 -0.74 5.96 16 43 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 44 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 45 H 0.12 0.95 8.14 -2.39 -0.02 0.93 16 46 H 0.07 0.58 7.56 -2.39 -0.02 0.56 16 47 H 0.07 0.50 7.56 -2.39 -0.02 0.48 16 48 H 0.12 0.77 8.14 -2.38 -0.02 0.75 16 49 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 50 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 Total: -1.00 -74.02 392.55 -0.06 -74.08 By element: Atomic # 1 Polarization: 15.46 SS G_CDS: 0.20 Total: 15.66 kcal Atomic # 6 Polarization: 22.05 SS G_CDS: 6.89 Total: 28.95 kcal Atomic # 7 Polarization: -113.15 SS G_CDS: -7.47 Total: -120.61 kcal Atomic # 8 Polarization: -43.80 SS G_CDS: -1.72 Total: -45.51 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.44 kcal Total: -74.02 -0.06 -74.08 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000727818018.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.304 kcal (2) G-P(sol) polarization free energy of solvation -74.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds