Wall clock time and date at job start Tue Mar 31 2020 22:52:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.46631 * 2 1 4 4 C 1.53000 * 109.46837 * 240.00322 * 2 1 3 5 5 O 1.45195 * 109.46938 * 120.00270 * 2 1 3 6 6 C 1.34635 * 117.00591 * 60.00120 * 5 2 1 7 7 O 1.21516 * 119.99681 * 359.97438 * 6 5 2 8 8 N 1.34777 * 120.00527 * 179.97438 * 6 5 2 9 9 C 1.47842 * 125.29260 * 180.81619 * 8 6 5 10 10 C 1.53917 * 107.80209 * 182.72211 * 9 8 6 11 11 H 1.09001 * 112.92378 * 248.06435 * 10 9 8 12 12 C 1.54600 * 108.00438 * 122.43964 * 10 9 8 13 13 C 1.54043 * 103.74040 * 275.80181 * 12 10 9 14 14 N 1.46850 * 106.52317 * 331.57821 * 13 12 10 15 15 C 1.34775 * 125.32229 * 198.28222 * 14 13 12 16 16 O 1.21587 * 119.99648 * 180.02562 * 15 14 13 17 17 N 1.34769 * 120.00187 * 0.02562 * 15 14 13 18 18 C 1.46500 * 120.00241 * 180.02562 * 17 15 14 19 19 C 1.50706 * 109.46949 * 180.02562 * 18 17 15 20 20 H 1.07995 * 120.00167 * 359.72205 * 19 18 17 21 21 C 1.37879 * 119.99394 * 179.97438 * 19 18 17 22 22 N 1.31514 * 120.00338 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99424 * 180.02562 * 21 19 18 24 24 H 1.48490 * 109.47405 * 60.00219 * 23 21 19 25 25 H 1.48503 * 109.46845 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.47399 * 299.99813 * 23 21 19 27 27 C 1.46124 * 109.35317 * 18.53938 * 14 13 12 28 28 H 1.08997 * 110.72829 * 237.76871 * 27 14 13 29 29 C 1.46666 * 125.27479 * 359.97438 * 8 6 5 30 30 H 1.08995 * 109.47572 * 299.99730 * 1 2 3 31 31 H 1.09002 * 109.47460 * 60.00139 * 1 2 3 32 32 H 1.09004 * 109.47014 * 179.97438 * 1 2 3 33 33 H 1.09006 * 109.46542 * 180.02562 * 3 2 1 34 34 H 1.08993 * 109.47699 * 299.99586 * 3 2 1 35 35 H 1.09003 * 109.47090 * 60.00472 * 3 2 1 36 36 H 1.08993 * 109.47348 * 299.99294 * 4 2 1 37 37 H 1.08993 * 109.47576 * 60.00363 * 4 2 1 38 38 H 1.09009 * 109.46583 * 179.97438 * 4 2 1 39 39 H 1.08997 * 110.60270 * 62.77187 * 9 8 6 40 40 H 1.09000 * 109.30068 * 301.92259 * 9 8 6 41 41 H 1.09002 * 110.56966 * 157.23370 * 12 10 9 42 42 H 1.08997 * 110.69461 * 34.42415 * 12 10 9 43 43 H 1.08997 * 110.04345 * 212.31351 * 13 12 10 44 44 H 1.08994 * 110.08784 * 90.86777 * 13 12 10 45 45 H 0.97010 * 119.99849 * 0.02562 * 17 15 14 46 46 H 1.09000 * 109.47175 * 60.00333 * 18 17 15 47 47 H 1.09001 * 109.47297 * 299.99840 * 18 17 15 48 48 H 0.96996 * 119.99730 * 179.97438 * 22 21 19 49 49 H 1.09000 * 109.92210 * 43.66779 * 29 8 6 50 50 H 1.08994 * 109.92471 * 282.36041 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 8 2.0139 -0.6845 1.1855 6 6 1.6523 -1.9723 1.3383 7 8 0.9509 -2.5095 0.5039 8 7 2.0680 -2.6658 2.4166 9 6 1.7563 -4.0845 2.6921 10 6 2.3715 -4.4452 4.0560 11 1 3.1991 -5.1501 3.9755 12 6 1.2353 -4.9522 4.9737 13 6 0.6296 -3.6601 5.5539 14 7 1.7118 -2.6678 5.5828 15 6 1.7151 -1.5398 6.3203 16 8 2.6656 -0.7833 6.2697 17 7 0.6650 -1.2503 7.1138 18 6 0.6683 -0.0238 7.9150 19 6 -0.6106 0.0620 8.7075 20 1 -1.3537 -0.7166 8.6195 21 6 -0.8341 1.1373 9.5411 22 7 0.0684 2.0883 9.6442 23 14 -2.4191 1.2433 10.5240 24 1 -2.5245 0.0654 11.4219 25 1 -2.4157 2.4867 11.3360 26 1 -3.5775 1.2627 9.5949 27 6 2.7817 -3.0918 4.6824 28 1 3.7243 -3.1871 5.2212 29 6 2.9145 -2.1349 3.4903 30 1 -0.3634 0.5137 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 3.1299 1.4425 -0.0005 34 1 1.6766 1.9564 -0.8899 35 1 1.6766 1.9563 0.8901 36 1 1.6767 -1.7488 -1.2493 37 1 1.6767 -0.2074 -2.1392 38 1 3.1300 -0.7208 -1.2495 39 1 2.1761 -4.7267 1.9179 40 1 0.6748 -4.2148 2.7305 41 1 1.6370 -5.5783 5.7704 42 1 0.4896 -5.4994 4.3970 43 1 0.2613 -3.8408 6.5637 44 1 -0.1826 -3.3088 4.9176 45 1 -0.0932 -1.8541 7.1544 46 1 0.7463 0.8407 7.2557 47 1 1.5180 -0.0380 8.5976 48 1 -0.0891 2.8449 10.2303 49 1 2.5740 -1.1391 3.7737 50 1 3.9524 -2.0954 3.1598 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000838572656.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:52:12 Heat of formation + Delta-G solvation = -126.054772 kcal Electronic energy + Delta-G solvation = -31169.271846 eV Core-core repulsion = 27002.729010 eV Total energy + Delta-G solvation = -4166.542836 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.24756 -41.44311 -39.80187 -38.04337 -36.34226 -36.14296 -35.01431 -34.32841 -33.09768 -31.10183 -29.38929 -28.42276 -28.39064 -28.28660 -25.67169 -25.02858 -23.52257 -22.76847 -21.30378 -20.87592 -20.53523 -19.53146 -18.88995 -18.13462 -17.74126 -17.67562 -17.18787 -16.92236 -16.47662 -16.08061 -15.98377 -15.47221 -15.10920 -15.05493 -14.81534 -14.63908 -14.41635 -14.16750 -14.08291 -13.87095 -13.78559 -13.40445 -13.25658 -13.15444 -12.96406 -12.93049 -12.91264 -12.80169 -12.68751 -12.54663 -12.35469 -12.24800 -12.11940 -12.00498 -11.72347 -11.51539 -11.43749 -11.20969 -11.17592 -10.80437 -10.07681 -9.85169 -9.42655 -8.29500 -6.46433 1.04713 1.41871 1.46646 1.54406 1.65939 1.71347 2.17947 2.37647 2.78434 3.05158 3.08499 3.35309 3.43390 3.60487 3.70009 3.75341 3.89871 4.00158 4.15160 4.22477 4.30024 4.43895 4.47372 4.56796 4.58688 4.65859 4.70973 4.72890 4.75094 4.78510 4.81277 4.82012 4.97833 5.02906 5.04957 5.11528 5.16380 5.22545 5.24853 5.25497 5.30748 5.39583 5.41134 5.49249 5.70904 5.83477 6.17726 6.29278 6.64574 7.14749 7.18875 7.23702 7.67352 8.82653 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.010825 B = 0.003141 C = 0.002684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2585.971540 B = 8910.940428 C =10428.836193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.121 3.879 3 C -0.138 4.138 4 C -0.172 4.172 5 O -0.377 6.377 6 C 0.661 3.339 7 O -0.586 6.586 8 N -0.601 5.601 9 C 0.127 3.873 10 C -0.085 4.085 11 H 0.158 0.842 12 C -0.107 4.107 13 C 0.088 3.912 14 N -0.627 5.627 15 C 0.707 3.293 16 O -0.640 6.640 17 N -0.722 5.722 18 C 0.289 3.711 19 C -0.557 4.557 20 H 0.081 0.919 21 C 0.006 3.994 22 N -0.930 5.930 23 Si 0.986 3.014 24 H -0.260 1.260 25 H -0.284 1.284 26 H -0.264 1.264 27 C 0.144 3.856 28 H 0.103 0.897 29 C 0.102 3.898 30 H 0.046 0.954 31 H 0.096 0.904 32 H 0.066 0.934 33 H 0.069 0.931 34 H 0.109 0.891 35 H 0.054 0.946 36 H 0.066 0.934 37 H 0.094 0.906 38 H 0.062 0.938 39 H 0.094 0.906 40 H 0.074 0.926 41 H 0.103 0.897 42 H 0.115 0.885 43 H 0.081 0.919 44 H 0.056 0.944 45 H 0.401 0.599 46 H -0.019 1.019 47 H -0.012 1.012 48 H 0.269 0.731 49 H 0.044 0.956 50 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.814 -15.927 -18.927 24.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.085 3.915 3 C -0.195 4.195 4 C -0.229 4.229 5 O -0.292 6.292 6 C 0.416 3.584 7 O -0.478 6.478 8 N -0.342 5.342 9 C 0.007 3.993 10 C -0.104 4.104 11 H 0.175 0.825 12 C -0.145 4.145 13 C -0.035 4.035 14 N -0.365 5.365 15 C 0.409 3.591 16 O -0.522 6.522 17 N -0.376 5.376 18 C 0.166 3.834 19 C -0.595 4.595 20 H 0.099 0.901 21 C -0.194 4.194 22 N -0.568 5.568 23 Si 0.808 3.192 24 H -0.185 1.185 25 H -0.209 1.209 26 H -0.189 1.189 27 C 0.039 3.961 28 H 0.121 0.879 29 C -0.023 4.023 30 H 0.065 0.935 31 H 0.115 0.885 32 H 0.085 0.915 33 H 0.088 0.912 34 H 0.127 0.873 35 H 0.073 0.927 36 H 0.085 0.915 37 H 0.113 0.887 38 H 0.081 0.919 39 H 0.112 0.888 40 H 0.092 0.908 41 H 0.122 0.878 42 H 0.133 0.867 43 H 0.099 0.901 44 H 0.074 0.926 45 H 0.236 0.764 46 H -0.001 1.001 47 H 0.006 0.994 48 H 0.078 0.922 49 H 0.062 0.938 50 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 3.269 -15.175 -19.173 24.669 hybrid contribution -0.867 0.837 0.711 1.399 sum 2.402 -14.337 -18.462 23.498 Atomic orbital electron populations 1.22467 0.94174 1.03740 1.03179 1.22460 0.94537 0.92649 0.81873 1.21901 1.02460 0.91237 1.03931 1.22417 1.01607 1.02222 0.96658 1.86375 1.71547 1.23569 1.47723 1.17686 0.78723 0.80571 0.81401 1.90858 1.42225 1.70985 1.43725 1.47313 1.53154 1.13194 1.20521 1.22439 1.01221 0.77987 0.97657 1.23066 1.00576 0.94641 0.92086 0.82478 1.22628 0.97344 0.94929 0.99601 1.22286 0.89909 0.89033 1.02234 1.47217 1.22284 1.21643 1.45376 1.15816 0.83127 0.81057 0.79087 1.90842 1.37514 1.51842 1.72020 1.45352 1.19840 1.26366 1.46030 1.18380 0.96333 0.80577 0.88118 1.21542 1.03255 1.08503 1.26184 0.90075 1.26057 1.01168 0.94500 0.97703 1.70135 1.36867 1.11051 1.38743 0.85200 0.77875 0.77896 0.78197 1.18452 1.20944 1.18852 1.21858 0.92040 0.93787 0.88390 0.87902 1.22175 0.95299 0.97883 0.86910 0.93491 0.88485 0.91490 0.91167 0.87276 0.92712 0.91481 0.88703 0.91883 0.88775 0.90806 0.87822 0.86662 0.90085 0.92574 0.76374 1.00076 0.99424 0.92177 0.93760 0.89317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.29 8.37 71.98 0.60 -3.69 16 2 C 0.12 2.91 1.13 -10.79 -0.01 2.90 16 3 C -0.14 -2.69 8.85 71.98 0.64 -2.05 16 4 C -0.17 -3.49 8.37 71.98 0.60 -2.88 16 5 O -0.38 -11.64 9.46 -55.44 -0.52 -12.16 16 6 C 0.66 20.08 7.91 129.79 1.03 21.10 16 7 O -0.59 -18.67 12.20 19.79 0.24 -18.43 16 8 N -0.60 -15.58 3.34 -945.66 -3.16 -18.74 16 9 C 0.13 2.15 6.34 86.43 0.55 2.70 16 10 C -0.08 -1.06 4.13 -9.37 -0.04 -1.10 16 11 H 0.16 0.83 8.14 -2.39 -0.02 0.81 16 12 C -0.11 -1.16 6.24 31.49 0.20 -0.96 16 13 C 0.09 1.82 6.25 86.67 0.54 2.36 16 14 N -0.63 -18.91 3.04 -809.70 -2.46 -21.37 16 15 C 0.71 30.63 8.08 179.06 1.45 32.08 16 16 O -0.64 -33.50 15.93 -3.99 -0.06 -33.56 16 17 N -0.72 -32.66 5.51 -482.30 -2.66 -35.31 16 18 C 0.29 16.46 5.43 85.63 0.46 16.92 16 19 C -0.56 -30.98 9.28 25.60 0.24 -30.75 16 20 H 0.08 4.08 7.60 -2.91 -0.02 4.06 16 21 C 0.01 0.31 5.46 84.66 0.46 0.77 16 22 N -0.93 -56.77 13.29 21.45 0.28 -56.48 16 23 Si 0.99 42.71 29.54 68.60 2.03 44.73 16 24 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 25 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 26 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 27 C 0.14 3.38 3.54 45.78 0.16 3.55 16 28 H 0.10 2.34 8.14 -2.39 -0.02 2.33 16 29 C 0.10 2.81 6.40 86.49 0.55 3.36 16 30 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.10 1.72 8.14 -2.39 -0.02 1.71 16 32 H 0.07 1.88 5.88 -2.38 -0.01 1.87 16 33 H 0.07 1.31 8.14 -2.38 -0.02 1.29 16 34 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.07 1.65 5.88 -2.39 -0.01 1.64 16 37 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.06 1.21 8.14 -2.38 -0.02 1.19 16 39 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 40 H 0.07 1.30 7.29 -2.39 -0.02 1.28 16 41 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 42 H 0.12 0.73 7.62 -2.39 -0.02 0.72 16 43 H 0.08 1.61 7.50 -2.39 -0.02 1.59 16 44 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 45 H 0.40 15.38 6.89 -92.70 -0.64 14.74 16 46 H -0.02 -1.21 8.14 -2.39 -0.02 -1.23 16 47 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16 48 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 49 H 0.04 1.67 7.12 -2.39 -0.02 1.65 16 50 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 Total: -1.00 -81.91 395.62 1.42 -80.49 By element: Atomic # 1 Polarization: 26.23 SS G_CDS: 0.30 Total: 26.53 kcal Atomic # 6 Polarization: 36.88 SS G_CDS: 7.43 Total: 44.31 kcal Atomic # 7 Polarization: -123.92 SS G_CDS: -7.99 Total: -131.91 kcal Atomic # 8 Polarization: -63.81 SS G_CDS: -0.35 Total: -64.16 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.73 kcal Total: -81.91 1.42 -80.49 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838572656.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.561 kcal (2) G-P(sol) polarization free energy of solvation -81.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds