Wall clock time and date at job start Tue Mar 31 2020 22:58:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.46616 * 2 1 4 4 C 1.53001 * 109.46923 * 240.00376 * 2 1 3 5 5 O 1.45196 * 109.47340 * 120.00214 * 2 1 3 6 6 C 1.34632 * 116.99949 * 60.00274 * 5 2 1 7 7 O 1.21507 * 120.00186 * 359.97438 * 6 5 2 8 8 N 1.34780 * 119.99844 * 180.02562 * 6 5 2 9 9 C 1.47423 * 125.64950 * 0.03721 * 8 6 5 10 10 C 1.55123 * 104.94231 * 203.96933 * 9 8 6 11 11 H 1.09004 * 110.93392 * 81.21497 * 10 9 8 12 12 O 1.42901 * 111.16199 * 205.12797 * 10 9 8 13 13 C 1.55156 * 101.48779 * 323.22429 * 10 9 8 14 14 H 1.09001 * 110.71827 * 276.82938 * 13 10 9 15 15 N 1.46898 * 110.71959 * 153.73669 * 13 10 9 16 16 C 1.46898 * 110.99934 * 157.44210 * 15 13 10 17 17 C 1.52997 * 109.47390 * 179.97438 * 16 15 13 18 18 H 1.09004 * 109.46881 * 54.99442 * 17 16 15 19 19 C 1.47201 * 109.47013 * 295.00280 * 17 16 15 20 20 N 9.10427 * 100.06244 * 168.25796 * 2 1 3 21 21 C 1.52997 * 109.47504 * 174.99803 * 17 16 15 22 22 C 1.50701 * 109.47212 * 184.99949 * 21 17 16 23 23 H 1.07998 * 120.00129 * 0.02562 * 22 21 17 24 24 C 1.37880 * 119.99861 * 179.97438 * 22 21 17 25 25 N 1.31512 * 119.99594 * 180.02562 * 24 22 21 26 26 Si 1.86797 * 119.99875 * 0.02562 * 24 22 21 27 27 H 1.48504 * 109.47061 * 90.00257 * 26 24 22 28 28 H 1.48497 * 109.46906 * 209.99430 * 26 24 22 29 29 H 1.48498 * 109.47403 * 329.99876 * 26 24 22 30 30 C 1.47022 * 125.64924 * 179.97438 * 8 6 5 31 31 H 1.09003 * 109.47156 * 299.99441 * 1 2 3 32 32 H 1.08994 * 109.47287 * 59.99725 * 1 2 3 33 33 H 1.09005 * 109.46777 * 180.02562 * 1 2 3 34 34 H 1.08999 * 109.46972 * 179.97438 * 3 2 1 35 35 H 1.08994 * 109.47517 * 300.00134 * 3 2 1 36 36 H 1.09003 * 109.46902 * 60.00402 * 3 2 1 37 37 H 1.08995 * 109.47142 * 299.99588 * 4 2 1 38 38 H 1.09007 * 109.46983 * 59.99852 * 4 2 1 39 39 H 1.08999 * 109.46742 * 179.97438 * 4 2 1 40 40 H 1.09000 * 110.36656 * 322.93231 * 9 8 6 41 41 H 1.08996 * 110.36883 * 85.14508 * 9 8 6 42 42 H 0.96701 * 114.00292 * 292.16941 * 12 10 9 43 43 H 1.00902 * 110.99755 * 281.39113 * 15 13 10 44 44 H 1.09003 * 109.47230 * 59.99766 * 16 15 13 45 45 H 1.08998 * 109.46947 * 299.99824 * 16 15 13 46 46 H 1.09002 * 109.47153 * 64.99951 * 21 17 16 47 47 H 1.09001 * 109.46832 * 305.00142 * 21 17 16 48 48 H 0.97002 * 119.99739 * 180.02562 * 25 24 22 49 49 H 1.09002 * 109.88124 * 59.55507 * 30 8 6 50 50 H 1.09001 * 110.01085 * 298.46617 * 30 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0141 -0.6845 1.1855 6 6 1.6524 -1.9723 1.3382 7 8 0.9511 -2.5094 0.5039 8 7 2.0674 -2.6654 2.4170 9 6 2.9159 -2.1396 3.5018 10 6 3.5973 -3.3895 4.1183 11 1 4.4589 -3.6957 3.5251 12 8 3.9709 -3.1556 5.4776 13 6 2.4581 -4.4389 4.0272 14 1 1.7760 -4.3420 4.8719 15 7 3.0087 -5.7991 3.9597 16 6 2.0192 -6.7902 4.4030 17 6 2.6275 -8.1915 4.3183 18 1 3.5562 -8.2194 4.8883 19 6 2.9055 -8.5214 2.9109 20 7 3.1207 -8.7766 1.8243 21 6 1.6434 -9.2105 4.8962 22 6 2.2895 -10.5717 4.9259 23 1 3.3009 -10.6974 4.5687 24 6 1.5896 -11.6565 5.4101 25 7 2.1535 -12.8443 5.4365 26 14 -0.1596 -11.4391 6.0286 27 1 -1.1103 -11.6414 4.9059 28 1 -0.4347 -12.4346 7.0955 29 1 -0.3243 -10.0685 6.5759 30 6 1.7479 -4.0708 2.7075 31 1 -0.3633 0.5138 0.8901 32 1 -0.3633 0.5138 -0.8899 33 1 -0.3633 -1.0277 0.0005 34 1 3.1299 1.4426 0.0005 35 1 1.6766 1.9564 -0.8899 36 1 1.6766 1.9563 0.8901 37 1 1.6767 -1.7488 -1.2493 38 1 1.6766 -0.2072 -2.1393 39 1 3.1300 -0.7208 -1.2495 40 1 3.6651 -1.4571 3.1006 41 1 2.3053 -1.6341 4.2500 42 1 4.6799 -2.5068 5.5847 43 1 3.3397 -6.0095 3.0300 44 1 1.1393 -6.7371 3.7618 45 1 1.7313 -6.5804 5.4332 46 1 0.7496 -9.2461 4.2735 47 1 1.3690 -8.9164 5.9093 48 1 1.6610 -13.6076 5.7767 49 1 2.1111 -4.7079 1.9011 50 1 0.6705 -4.1929 2.8195 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000843118478.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:58:04 Heat of formation + Delta-G solvation = -99.246016 kcal Electronic energy + Delta-G solvation = -29812.813867 eV Core-core repulsion = 25647.433545 eV Total energy + Delta-G solvation = -4165.380321 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.18249 -39.64022 -37.46440 -37.10137 -35.82474 -35.04168 -34.28632 -33.51339 -31.87071 -29.70798 -28.60917 -27.79115 -27.73500 -26.62813 -24.24000 -22.78352 -22.05982 -21.62285 -20.89736 -19.78507 -18.34015 -17.85478 -17.05167 -16.92001 -16.80001 -16.55661 -15.89154 -15.81116 -15.10011 -14.84322 -14.61866 -14.30759 -13.98387 -13.88779 -13.75221 -13.39397 -13.26855 -13.03901 -12.89899 -12.81274 -12.66439 -12.53015 -12.39779 -12.28361 -12.27407 -12.16413 -11.96652 -11.76861 -11.66834 -11.48333 -11.23339 -11.10264 -10.87015 -10.72038 -10.63051 -10.33631 -10.27092 -10.00128 -9.78825 -9.34221 -9.16028 -8.62461 -8.58761 -6.10925 -4.11739 1.67040 2.51723 3.27038 3.34557 3.35060 3.36167 3.47706 3.51647 3.71700 3.91574 4.12822 4.32922 4.37310 4.38042 4.49388 4.51710 4.65064 4.73779 4.81510 4.91192 5.07502 5.08154 5.15772 5.22563 5.23665 5.30517 5.31784 5.35951 5.39318 5.40300 5.48372 5.54100 5.55922 5.59600 5.73985 5.93076 5.95986 5.97898 6.10393 6.12877 6.31703 6.79732 6.93437 7.06127 7.10013 7.16197 7.33692 7.62628 7.99947 8.30160 8.41422 8.92468 9.48712 11.02111 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.017714 B = 0.002182 C = 0.002097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1580.287202 B =12829.021226 C =13350.957703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.135 3.865 3 C -0.140 4.140 4 C -0.184 4.184 5 O -0.362 6.362 6 C 0.668 3.332 7 O -0.562 6.562 8 N -0.599 5.599 9 C 0.072 3.928 10 C 0.104 3.896 11 H 0.081 0.919 12 O -0.542 6.542 13 C 0.086 3.914 14 H 0.111 0.889 15 N -0.670 5.670 16 C 0.062 3.938 17 C 0.018 3.982 18 H 0.118 0.882 19 C 0.235 3.765 20 N -0.465 5.465 21 C -0.004 4.004 22 C -0.528 4.528 23 H 0.074 0.926 24 C 0.071 3.929 25 N -0.896 5.896 26 Si 0.878 3.122 27 H -0.277 1.277 28 H -0.287 1.287 29 H -0.262 1.262 30 C 0.099 3.901 31 H 0.059 0.941 32 H 0.071 0.929 33 H 0.087 0.913 34 H 0.066 0.934 35 H 0.081 0.919 36 H 0.066 0.934 37 H 0.088 0.912 38 H 0.071 0.929 39 H 0.060 0.940 40 H 0.083 0.917 41 H 0.080 0.920 42 H 0.380 0.620 43 H 0.343 0.657 44 H 0.039 0.961 45 H 0.097 0.903 46 H 0.019 0.981 47 H 0.040 0.960 48 H 0.265 0.735 49 H 0.076 0.924 50 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.348 32.000 -4.754 32.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.099 3.901 3 C -0.197 4.197 4 C -0.241 4.241 5 O -0.276 6.276 6 C 0.423 3.577 7 O -0.451 6.451 8 N -0.341 5.341 9 C -0.052 4.052 10 C 0.043 3.957 11 H 0.099 0.901 12 O -0.346 6.346 13 C -0.026 4.026 14 H 0.129 0.871 15 N -0.301 5.301 16 C -0.067 4.067 17 C -0.004 4.004 18 H 0.136 0.864 19 C -0.082 4.082 20 N -0.142 5.142 21 C -0.043 4.043 22 C -0.566 4.566 23 H 0.092 0.908 24 C -0.132 4.132 25 N -0.534 5.534 26 Si 0.705 3.295 27 H -0.203 1.203 28 H -0.213 1.213 29 H -0.187 1.187 30 C -0.025 4.025 31 H 0.078 0.922 32 H 0.090 0.910 33 H 0.106 0.894 34 H 0.085 0.915 35 H 0.100 0.900 36 H 0.085 0.915 37 H 0.106 0.894 38 H 0.090 0.910 39 H 0.079 0.921 40 H 0.102 0.898 41 H 0.098 0.902 42 H 0.227 0.773 43 H 0.163 0.837 44 H 0.058 0.942 45 H 0.115 0.885 46 H 0.038 0.962 47 H 0.058 0.942 48 H 0.074 0.926 49 H 0.094 0.906 50 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 0.242 30.938 -5.996 31.514 hybrid contribution -1.209 0.352 -0.271 1.288 sum -0.967 31.289 -6.266 31.925 Atomic orbital electron populations 1.22521 0.93913 1.05139 1.02527 1.22107 0.94458 0.91510 0.82049 1.21856 1.02252 0.92407 1.03172 1.22525 1.01594 1.03574 0.96451 1.86292 1.71537 1.23295 1.46510 1.17480 0.78748 0.80488 0.80994 1.90934 1.41067 1.70465 1.42603 1.46802 1.53484 1.12545 1.21313 1.23142 0.94506 0.97769 0.89743 1.22908 0.96784 0.92258 0.83710 0.90148 1.86598 1.58825 1.65212 1.23923 1.22622 0.94696 0.89172 0.96093 0.87109 1.60604 1.37664 1.00096 1.31692 1.22229 0.92663 0.89812 1.02032 1.19071 1.03220 0.93962 0.84186 0.86379 1.29223 0.92169 0.92059 0.94761 1.81105 1.10077 1.09469 1.13557 1.19638 0.93954 0.94189 0.96534 1.21018 1.02154 0.90460 1.42963 0.90771 1.24999 0.98046 0.95078 0.95052 1.69906 1.37620 0.99624 1.46293 0.86810 0.85198 0.78518 0.78965 1.20333 1.21252 1.18651 1.22887 1.01733 0.79954 0.97935 0.92155 0.91035 0.89383 0.91454 0.90047 0.91456 0.89364 0.91031 0.92131 0.89812 0.90157 0.77309 0.83735 0.94246 0.88485 0.96231 0.94168 0.92560 0.90598 0.90249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.56 8.37 37.16 0.31 -1.24 16 2 C 0.14 1.15 1.13 -90.62 -0.10 1.05 16 3 C -0.14 -0.79 8.85 37.16 0.33 -0.46 16 4 C -0.18 -1.60 8.37 37.16 0.31 -1.28 16 5 O -0.36 -3.76 9.42 -40.30 -0.38 -4.14 16 6 C 0.67 8.09 7.93 54.06 0.43 8.52 16 7 O -0.56 -8.16 12.21 -19.28 -0.24 -8.40 16 8 N -0.60 -6.20 3.33 -176.17 -0.59 -6.79 16 9 C 0.07 0.55 6.67 -2.41 -0.02 0.53 16 10 C 0.10 0.84 4.13 -24.47 -0.10 0.74 16 11 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 12 O -0.54 -4.34 13.48 -35.23 -0.47 -4.82 16 13 C 0.09 0.83 2.98 -65.88 -0.20 0.63 16 14 H 0.11 1.06 7.86 -51.93 -0.41 0.65 16 15 N -0.67 -7.72 6.36 -104.80 -0.67 -8.38 16 16 C 0.06 0.80 4.99 -3.83 -0.02 0.78 16 17 C 0.02 0.30 2.42 -93.41 -0.23 0.07 16 18 H 0.12 1.97 8.14 -51.93 -0.42 1.55 16 19 C 0.23 4.57 12.98 -20.73 -0.27 4.30 16 20 N -0.47 -9.98 18.54 42.19 0.78 -9.19 16 21 C 0.00 -0.09 3.49 -27.88 -0.10 -0.18 16 22 C -0.53 -14.10 9.15 -34.44 -0.32 -14.41 16 23 H 0.07 2.18 7.84 -52.49 -0.41 1.77 16 24 C 0.07 1.97 5.47 -17.82 -0.10 1.88 16 25 N -0.90 -27.00 13.96 55.43 0.77 -26.23 16 26 Si 0.88 20.58 27.47 -169.99 -4.67 15.91 16 27 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 28 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 29 H -0.26 -5.65 6.54 56.52 0.37 -5.28 16 30 C 0.10 1.02 6.57 -3.07 -0.02 1.00 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.09 0.98 5.88 -51.93 -0.31 0.67 16 34 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 36 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.09 1.01 5.88 -51.93 -0.31 0.70 16 38 H 0.07 0.48 8.14 -51.92 -0.42 0.06 16 39 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 40 H 0.08 0.54 8.04 -51.93 -0.42 0.12 16 41 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 42 H 0.38 1.33 9.12 45.56 0.42 1.74 16 43 H 0.34 4.14 7.18 -39.29 -0.28 3.86 16 44 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.10 1.14 8.08 -51.93 -0.42 0.72 16 46 H 0.02 0.41 7.57 -51.93 -0.39 0.02 16 47 H 0.04 0.79 7.20 -51.93 -0.37 0.42 16 48 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 49 H 0.08 0.88 7.53 -51.93 -0.39 0.49 16 50 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 407.21 15.07 6.14 6.14 Total: -1.00 -34.07 407.21 -6.93 -41.01 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: -7.53 Total: 2.98 kcal Atomic # 6 Polarization: 2.00 SS G_CDS: -0.08 Total: 1.92 kcal Atomic # 7 Polarization: -50.89 SS G_CDS: 0.30 Total: -50.59 kcal Atomic # 8 Polarization: -16.27 SS G_CDS: -1.09 Total: -17.36 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -4.67 Total: 15.91 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -34.07 -6.93 -41.01 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000843118478.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.240 kcal (2) G-P(sol) polarization free energy of solvation -34.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds