Wall clock time and date at job start Tue Mar 31 2020 22:50:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47269 * 2 1 4 4 C 1.52997 * 109.47232 * 239.99603 * 2 1 3 5 5 O 1.45206 * 109.46989 * 119.99587 * 2 1 3 6 6 C 1.34639 * 116.99892 * 59.99951 * 5 2 1 7 7 O 1.21513 * 119.99857 * 359.97438 * 6 5 2 8 8 N 1.34773 * 119.99616 * 179.97438 * 6 5 2 9 9 C 1.47159 * 120.71326 * 359.72613 * 8 6 5 10 10 C 1.54320 * 107.80380 * 132.67850 * 9 8 6 11 11 H 1.09003 * 112.53151 * 182.37892 * 10 9 8 12 12 C 1.54544 * 107.98641 * 306.73873 * 10 9 8 13 13 C 1.55860 * 104.99763 * 89.00698 * 12 10 9 14 14 C 1.54544 * 104.09397 * 0.02562 * 13 12 10 15 15 H 1.09006 * 112.17850 * 146.80982 * 14 13 12 16 16 C 1.47165 * 120.70799 * 179.97438 * 8 6 5 17 17 N 1.48304 * 107.10182 * 58.61961 * 10 9 8 18 18 C 1.34783 * 128.07574 * 106.57394 * 17 10 9 19 19 O 1.21585 * 119.99867 * 179.97438 * 18 17 10 20 20 N 1.34770 * 120.00085 * 359.97438 * 18 17 10 21 21 C 1.46507 * 120.00054 * 180.02562 * 20 18 17 22 22 C 1.50696 * 109.47051 * 179.97438 * 21 20 18 23 23 H 1.08003 * 120.00407 * 0.02562 * 22 21 20 24 24 C 1.37875 * 120.00013 * 179.97438 * 22 21 20 25 25 N 1.31521 * 120.00030 * 0.02562 * 24 22 21 26 26 Si 1.86802 * 120.00359 * 180.02562 * 24 22 21 27 27 H 1.48502 * 109.46770 * 359.97438 * 26 24 22 28 28 H 1.48492 * 109.47171 * 119.99946 * 26 24 22 29 29 H 1.48499 * 109.46835 * 240.00132 * 26 24 22 30 30 H 1.09000 * 109.47140 * 300.00547 * 1 2 3 31 31 H 1.09001 * 109.47230 * 59.99691 * 1 2 3 32 32 H 1.09001 * 109.47375 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47362 * 180.02562 * 3 2 1 34 34 H 1.09002 * 109.46716 * 299.99747 * 3 2 1 35 35 H 1.09000 * 109.47486 * 59.99665 * 3 2 1 36 36 H 1.09001 * 109.46832 * 300.00199 * 4 2 1 37 37 H 1.09002 * 109.47153 * 60.00008 * 4 2 1 38 38 H 1.08996 * 109.46952 * 180.02562 * 4 2 1 39 39 H 1.08997 * 109.74880 * 252.38654 * 9 8 6 40 40 H 1.08999 * 109.75117 * 13.11913 * 9 8 6 41 41 H 1.09003 * 110.36292 * 207.85776 * 12 10 9 42 42 H 1.09000 * 110.36654 * 330.06482 * 12 10 9 43 43 H 1.08997 * 110.90063 * 241.33490 * 13 12 10 44 44 H 1.09002 * 110.55076 * 118.52421 * 13 12 10 45 45 H 1.09005 * 109.74980 * 346.88755 * 16 8 6 46 46 H 1.08998 * 109.74924 * 107.61107 * 16 8 6 47 47 H 0.96999 * 120.00471 * 0.02562 * 20 18 17 48 48 H 1.08996 * 109.47177 * 300.00010 * 21 20 18 49 49 H 1.08996 * 109.46682 * 60.00161 * 21 20 18 50 50 H 0.96993 * 120.00354 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0140 -0.6844 1.1857 6 6 1.6521 -1.9723 1.3385 7 8 0.9508 -2.5094 0.5042 8 7 2.0680 -2.6655 2.4169 9 6 2.9227 -2.0323 3.4338 10 6 2.3313 -2.3637 4.8201 11 1 2.8852 -1.8949 5.6334 12 6 0.8419 -1.9512 4.8146 13 6 0.0772 -3.2076 4.2990 14 6 1.1910 -4.2492 4.0478 15 1 0.8550 -5.2669 4.2466 16 6 1.6814 -4.0736 2.5999 17 7 2.3031 -3.8417 4.9401 18 6 3.1017 -4.6304 5.6863 19 8 2.9473 -5.8364 5.6748 20 7 4.0712 -4.0823 6.4451 21 6 4.9397 -4.9397 7.2558 22 6 5.9319 -4.0865 8.0031 23 1 5.9169 -3.0129 7.8863 24 6 6.8582 -4.6763 8.8368 25 7 6.8762 -5.9836 8.9794 26 14 8.0877 -3.6187 9.7637 27 1 7.8597 -2.1892 9.4324 28 1 7.9140 -3.8227 11.2243 29 1 9.4670 -4.0036 9.3707 30 1 -0.3633 0.5139 0.8899 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9562 -0.8900 35 1 1.6767 1.9564 0.8899 36 1 1.6766 -1.7490 -1.2491 37 1 1.6767 -0.2075 -2.1392 38 1 3.1300 -0.7217 -1.2489 39 1 3.9367 -2.4249 3.3590 40 1 2.9333 -0.9525 3.2855 41 1 0.5151 -1.6969 5.8229 42 1 0.6843 -1.1083 4.1417 43 1 -0.4523 -2.9873 3.3722 44 1 -0.6173 -3.5704 5.0567 45 1 0.8803 -4.3289 1.9061 46 1 2.5424 -4.7180 2.4222 47 1 4.1942 -3.1202 6.4546 48 1 4.3342 -5.5012 7.9673 49 1 5.4738 -5.6333 6.6064 50 1 7.5275 -6.3986 9.5662 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000854027559.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:50:47 Heat of formation + Delta-G solvation = -115.271026 kcal Electronic energy + Delta-G solvation = -31355.642514 eV Core-core repulsion = 27189.567296 eV Total energy + Delta-G solvation = -4166.075218 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.40915 -41.30553 -39.70217 -37.92435 -36.16447 -35.68261 -34.66554 -34.33372 -32.68593 -32.29520 -29.18197 -28.30956 -28.23458 -27.87629 -25.94289 -24.91867 -23.60017 -22.60131 -21.65850 -20.87399 -20.45253 -19.60259 -18.47468 -17.83062 -17.73460 -17.59889 -17.06111 -16.61314 -16.46812 -16.16511 -15.94065 -15.30313 -15.19475 -15.06628 -14.88047 -14.81519 -14.39118 -14.08797 -13.98401 -13.85605 -13.72198 -13.41074 -13.26187 -13.03649 -12.95649 -12.85889 -12.80649 -12.74593 -12.48512 -12.43965 -12.30831 -12.21570 -12.11157 -11.98358 -11.48975 -11.43147 -11.33991 -11.21999 -11.04964 -10.80800 -10.40019 -9.90242 -9.32869 -8.27245 -6.43547 1.03396 1.44553 1.46265 1.58348 1.64785 1.74843 2.19537 2.39399 2.74928 3.08103 3.13541 3.50263 3.56269 3.72488 3.80782 3.83104 3.86525 4.00580 4.04485 4.24370 4.34892 4.42247 4.47949 4.61360 4.61723 4.67217 4.68647 4.72649 4.82428 4.83104 4.88589 4.91211 4.93918 5.02831 5.08304 5.15741 5.16574 5.27741 5.29067 5.33595 5.37574 5.41018 5.48625 5.50838 5.70706 5.85857 6.19345 6.31811 6.68377 7.16832 7.25503 7.26549 7.69181 8.85342 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.016721 B = 0.002680 C = 0.002473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1674.145665 B =10445.704248 C =11320.638626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.126 3.874 3 C -0.136 4.136 4 C -0.181 4.181 5 O -0.363 6.363 6 C 0.656 3.344 7 O -0.590 6.590 8 N -0.587 5.587 9 C 0.107 3.893 10 C 0.112 3.888 11 H 0.122 0.878 12 C -0.114 4.114 13 C -0.116 4.116 14 C 0.133 3.867 15 H 0.100 0.900 16 C 0.128 3.872 17 N -0.635 5.635 18 C 0.716 3.284 19 O -0.646 6.646 20 N -0.719 5.719 21 C 0.287 3.713 22 C -0.551 4.551 23 H 0.085 0.915 24 C 0.003 3.997 25 N -0.931 5.931 26 Si 0.985 3.015 27 H -0.251 1.251 28 H -0.280 1.280 29 H -0.280 1.280 30 H 0.065 0.935 31 H 0.087 0.913 32 H 0.062 0.938 33 H 0.066 0.934 34 H 0.100 0.900 35 H 0.073 0.927 36 H 0.060 0.940 37 H 0.090 0.910 38 H 0.057 0.943 39 H 0.064 0.936 40 H 0.124 0.876 41 H 0.084 0.916 42 H 0.092 0.908 43 H 0.086 0.914 44 H 0.079 0.921 45 H 0.110 0.890 46 H 0.057 0.943 47 H 0.402 0.598 48 H -0.015 1.015 49 H -0.016 1.016 50 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.738 19.724 -17.605 29.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.089 3.911 3 C -0.193 4.193 4 C -0.238 4.238 5 O -0.277 6.277 6 C 0.411 3.589 7 O -0.481 6.481 8 N -0.327 5.327 9 C -0.017 4.017 10 C 0.008 3.992 11 H 0.140 0.860 12 C -0.152 4.152 13 C -0.154 4.154 14 C 0.029 3.971 15 H 0.118 0.882 16 C 0.005 3.995 17 N -0.374 5.374 18 C 0.419 3.581 19 O -0.529 6.529 20 N -0.372 5.372 21 C 0.164 3.836 22 C -0.588 4.588 23 H 0.103 0.897 24 C -0.196 4.196 25 N -0.570 5.570 26 Si 0.808 3.192 27 H -0.174 1.174 28 H -0.205 1.205 29 H -0.206 1.206 30 H 0.084 0.916 31 H 0.106 0.894 32 H 0.081 0.919 33 H 0.085 0.915 34 H 0.118 0.882 35 H 0.092 0.908 36 H 0.079 0.921 37 H 0.108 0.892 38 H 0.076 0.924 39 H 0.082 0.918 40 H 0.142 0.858 41 H 0.103 0.897 42 H 0.110 0.890 43 H 0.105 0.895 44 H 0.097 0.903 45 H 0.128 0.872 46 H 0.075 0.925 47 H 0.238 0.762 48 H 0.003 0.997 49 H 0.002 0.998 50 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -13.875 18.552 -17.751 29.185 hybrid contribution 0.906 -0.307 0.526 1.092 sum -12.969 18.245 -17.224 28.244 Atomic orbital electron populations 1.22453 0.93642 1.03724 1.03645 1.22400 0.94781 0.92558 0.81312 1.21879 1.02298 0.90685 1.04408 1.22478 1.01397 1.02233 0.97691 1.86306 1.71491 1.22692 1.47224 1.17966 0.78434 0.80926 0.81552 1.90885 1.42528 1.71022 1.43668 1.46904 1.52470 1.11798 1.21494 1.22462 0.93020 1.00109 0.86073 1.22964 0.99114 0.79680 0.97392 0.86044 1.22711 0.91749 0.97765 1.02973 1.22729 0.96034 0.94265 1.02375 1.22527 0.86545 1.00690 0.87370 0.88225 1.22092 1.01149 0.79425 0.96825 1.48275 1.34738 1.07443 1.46895 1.15701 0.79579 0.84163 0.78689 1.90845 1.75196 1.14962 1.71852 1.45279 1.33927 1.10917 1.47104 1.18413 0.87385 0.89777 0.88019 1.21598 1.15877 0.94451 1.26919 0.89725 1.26063 0.99707 0.96379 0.97459 1.70152 1.36987 1.11404 1.38477 0.85102 0.77396 0.79088 0.77568 1.17387 1.20546 1.20623 0.91584 0.89384 0.91874 0.91504 0.88168 0.90835 0.92069 0.89169 0.92429 0.91763 0.85753 0.89712 0.88973 0.89514 0.90254 0.87217 0.92507 0.76197 0.99696 0.99792 0.92288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.56 8.37 71.98 0.60 -1.95 16 2 C 0.13 1.92 1.13 -10.80 -0.01 1.90 16 3 C -0.14 -1.27 8.85 71.98 0.64 -0.64 16 4 C -0.18 -2.94 8.37 71.98 0.60 -2.34 16 5 O -0.36 -7.03 8.58 -55.49 -0.48 -7.51 16 6 C 0.66 15.07 7.74 129.79 1.00 16.07 16 7 O -0.59 -15.89 11.35 19.80 0.22 -15.66 16 8 N -0.59 -12.90 2.25 -944.49 -2.12 -15.02 16 9 C 0.11 2.07 5.96 86.70 0.52 2.59 16 10 C 0.11 2.31 4.01 45.62 0.18 2.49 16 11 H 0.12 2.22 6.88 -2.39 -0.02 2.20 16 12 C -0.11 -1.85 6.22 32.11 0.20 -1.65 16 13 C -0.12 -2.15 6.31 32.11 0.20 -1.95 16 14 C 0.13 3.38 4.08 45.47 0.19 3.56 16 15 H 0.10 2.83 7.92 -2.38 -0.02 2.81 16 16 C 0.13 3.09 5.88 86.55 0.51 3.60 16 17 N -0.64 -19.07 2.74 -773.38 -2.12 -21.19 16 18 C 0.72 30.37 8.58 179.05 1.54 31.90 16 19 O -0.65 -33.96 16.65 -3.99 -0.07 -34.03 16 20 N -0.72 -31.05 5.53 -482.30 -2.67 -33.72 16 21 C 0.29 15.91 5.43 85.63 0.46 16.38 16 22 C -0.55 -29.68 9.28 25.60 0.24 -29.44 16 23 H 0.08 4.09 7.60 -2.91 -0.02 4.07 16 24 C 0.00 0.19 5.46 84.65 0.46 0.65 16 25 N -0.93 -56.19 13.29 21.45 0.28 -55.91 16 26 Si 0.99 41.87 29.54 68.60 2.03 43.90 16 27 H -0.25 -9.71 7.11 99.48 0.71 -9.01 16 28 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 29 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 30 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.06 1.26 5.88 -2.39 -0.01 1.25 16 33 H 0.07 0.65 8.14 -2.39 -0.02 0.64 16 34 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 35 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 36 H 0.06 1.35 5.88 -2.39 -0.01 1.34 16 37 H 0.09 1.04 8.14 -2.39 -0.02 1.03 16 38 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 39 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 40 H 0.12 1.84 7.04 -2.39 -0.02 1.83 16 41 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 42 H 0.09 1.25 7.85 -2.39 -0.02 1.23 16 43 H 0.09 1.50 7.84 -2.39 -0.02 1.48 16 44 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 45 H 0.11 2.51 7.11 -2.38 -0.02 2.50 16 46 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 47 H 0.40 14.29 6.74 -92.71 -0.63 13.67 16 48 H -0.01 -0.93 8.14 -2.39 -0.02 -0.95 16 49 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 50 H 0.27 15.07 8.31 -92.71 -0.77 14.30 16 Total: -1.00 -76.01 391.80 2.73 -73.28 By element: Atomic # 1 Polarization: 24.37 SS G_CDS: 0.32 Total: 24.69 kcal Atomic # 6 Polarization: 33.85 SS G_CDS: 7.33 Total: 41.18 kcal Atomic # 7 Polarization: -119.22 SS G_CDS: -6.63 Total: -125.84 kcal Atomic # 8 Polarization: -56.88 SS G_CDS: -0.32 Total: -57.20 kcal Atomic # 14 Polarization: 41.87 SS G_CDS: 2.03 Total: 43.90 kcal Total: -76.01 2.73 -73.28 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000854027559.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.995 kcal (2) G-P(sol) polarization free energy of solvation -76.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds