Wall clock time and date at job start Tue Mar 31 2020 23:03:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47044 * 2 1 4 4 C 1.53000 * 109.47058 * 240.00017 * 2 1 3 5 5 O 1.45200 * 109.46795 * 120.00319 * 2 1 3 6 6 C 1.34632 * 117.00141 * 59.99730 * 5 2 1 7 7 O 1.21508 * 120.00349 * 0.02562 * 6 5 2 8 8 N 1.34776 * 119.99696 * 179.97438 * 6 5 2 9 9 C 1.50245 * 130.84178 * 359.97438 * 8 6 5 10 10 H 1.08994 * 115.85273 * 359.65530 * 9 8 6 11 11 C 1.55846 * 101.04966 * 233.98401 * 9 8 6 12 12 C 1.54853 * 103.44571 * 327.05823 * 11 9 8 13 13 C 1.50239 * 130.83721 * 180.02562 * 8 6 5 14 14 H 1.08995 * 116.46044 * 359.97438 * 13 8 6 15 15 C 1.55847 * 101.05361 * 233.95207 * 13 8 6 16 16 H 1.08991 * 110.63025 * 208.57565 * 15 13 8 17 17 N 1.46503 * 110.62640 * 85.54904 * 15 13 8 18 18 C 1.34779 * 119.99580 * 155.00284 * 17 15 13 19 19 O 1.21585 * 119.99992 * 0.02562 * 18 17 15 20 20 N 1.34781 * 119.99571 * 180.02562 * 18 17 15 21 21 C 1.46496 * 120.00011 * 179.97438 * 20 18 17 22 22 C 1.50694 * 109.47264 * 180.02562 * 21 20 18 23 23 H 1.07999 * 119.99973 * 0.02562 * 22 21 20 24 24 C 1.37880 * 120.00154 * 180.02562 * 22 21 20 25 25 N 1.31513 * 120.00156 * 180.02562 * 24 22 21 26 26 Si 1.86804 * 119.99749 * 0.02562 * 24 22 21 27 27 H 1.48501 * 109.47443 * 90.00083 * 26 24 22 28 28 H 1.48502 * 109.46903 * 210.00113 * 26 24 22 29 29 H 1.48498 * 109.47047 * 329.99881 * 26 24 22 30 30 C 1.54853 * 103.44204 * 327.06299 * 15 13 8 31 31 H 1.09006 * 109.46960 * 299.99942 * 1 2 3 32 32 H 1.09003 * 109.47369 * 59.99965 * 1 2 3 33 33 H 1.08998 * 109.47495 * 179.97438 * 1 2 3 34 34 H 1.09000 * 109.47031 * 179.97438 * 3 2 1 35 35 H 1.09003 * 109.47578 * 300.00105 * 3 2 1 36 36 H 1.09006 * 109.47194 * 60.00202 * 3 2 1 37 37 H 1.08998 * 109.46969 * 300.00324 * 4 2 1 38 38 H 1.09003 * 109.47016 * 59.99801 * 4 2 1 39 39 H 1.09000 * 109.47053 * 180.02562 * 4 2 1 40 40 H 1.08990 * 110.62518 * 208.56964 * 11 9 8 41 41 H 1.09001 * 110.62404 * 85.54754 * 11 9 8 42 42 H 1.08994 * 110.63069 * 241.51222 * 12 11 9 43 43 H 1.09000 * 110.62636 * 118.48715 * 12 11 9 44 44 H 0.96994 * 120.00080 * 335.00100 * 17 15 13 45 45 H 0.97000 * 119.99962 * 0.02562 * 20 18 17 46 46 H 1.09002 * 109.47503 * 300.00581 * 21 20 18 47 47 H 1.09005 * 109.46787 * 60.00046 * 21 20 18 48 48 H 0.97000 * 119.99839 * 180.02562 * 25 24 22 49 49 H 1.09002 * 110.62748 * 118.49166 * 30 15 13 50 50 H 1.09007 * 110.62507 * 241.50562 * 30 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7212 -1.2492 5 8 2.0139 -0.6846 1.1855 6 6 1.6521 -1.9723 1.3383 7 8 0.9515 -2.5097 0.5035 8 7 2.0679 -2.6657 2.4166 9 6 2.9266 -2.2536 3.5786 10 1 3.2876 -1.2253 3.5616 11 6 4.0293 -3.3542 3.5402 12 6 3.2726 -4.6044 3.0281 13 6 1.8163 -4.0891 2.8263 14 1 1.1954 -4.6846 2.1570 15 6 1.2538 -3.8906 4.2661 16 1 1.4779 -4.7567 4.8887 17 7 -0.1893 -3.6411 4.2266 18 6 -0.9535 -3.9349 5.2972 19 8 -0.4451 -4.4067 6.2959 20 7 -2.2811 -3.7058 5.2607 21 6 -3.1119 -4.0257 6.4241 22 6 -4.5478 -3.6780 6.1269 23 1 -4.8149 -3.2608 5.1672 24 6 -5.5206 -3.8924 7.0802 25 7 -6.7737 -3.5894 6.8207 26 14 -5.0585 -4.6132 8.7405 27 1 -4.7281 -3.5141 9.6828 28 1 -6.2009 -5.3970 9.2751 29 1 -3.8791 -5.5018 8.5834 30 6 2.0098 -2.6402 4.7787 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3634 -1.0276 -0.0005 34 1 3.1300 1.4424 0.0005 35 1 1.6767 1.9564 -0.8900 36 1 1.6767 1.9563 0.8900 37 1 1.6766 -1.7489 -1.2492 38 1 1.6766 -0.2074 -2.1392 39 1 3.1300 -0.7216 -1.2490 40 1 4.4307 -3.5304 4.5381 41 1 4.8248 -3.0767 2.8486 42 1 3.2988 -5.4006 3.7719 43 1 3.6928 -4.9469 2.0825 44 1 -0.5947 -3.2644 3.4300 45 1 -2.6867 -3.3298 4.4638 46 1 -3.0344 -5.0904 6.6443 47 1 -2.7690 -3.4509 7.2845 48 1 -7.4580 -3.7399 7.4915 49 1 1.3110 -1.8344 5.0036 50 1 2.6088 -2.8862 5.6556 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000894486559.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:33 Heat of formation + Delta-G solvation = -111.852760 kcal Electronic energy + Delta-G solvation = -30883.984847 eV Core-core repulsion = 26718.057857 eV Total energy + Delta-G solvation = -4165.926991 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.27498 -41.21834 -40.35360 -37.73365 -36.23694 -35.36497 -34.99193 -34.36358 -32.27151 -30.95899 -30.48979 -29.01017 -28.36729 -28.29432 -24.96035 -24.40761 -22.97330 -22.25145 -21.74462 -20.86549 -20.24266 -19.88803 -19.07468 -18.34926 -17.75621 -17.49762 -17.24525 -16.60815 -16.40337 -16.21531 -15.93534 -15.61985 -15.13263 -14.98107 -14.85143 -14.60607 -14.44734 -14.31126 -14.00109 -13.86534 -13.35815 -13.30854 -13.16955 -13.06921 -13.02831 -12.86562 -12.85783 -12.68135 -12.49559 -12.35916 -12.27273 -12.18067 -11.91765 -11.90517 -11.67244 -11.44995 -11.38678 -11.14246 -11.08405 -10.92056 -10.36733 -9.99381 -9.65925 -8.40121 -6.47646 0.97295 1.34336 1.35523 1.49486 1.75601 1.81642 2.18434 2.29082 2.76228 2.95350 3.36626 3.38203 3.56947 3.68434 3.75596 3.80571 3.94716 3.95471 4.08381 4.21839 4.28514 4.33766 4.43788 4.52159 4.59354 4.61220 4.72374 4.75983 4.79376 4.85191 4.87753 5.01076 5.04730 5.05250 5.06779 5.07388 5.13469 5.20307 5.23788 5.27743 5.32502 5.37613 5.48174 5.52560 5.57776 5.92880 6.23915 6.52473 6.54280 7.10902 7.20914 7.26054 7.63373 8.74928 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.012990 B = 0.002823 C = 0.002452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2154.905190 B = 9914.867776 C =11418.460791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.126 3.874 3 C -0.135 4.135 4 C -0.176 4.176 5 O -0.367 6.367 6 C 0.670 3.330 7 O -0.596 6.596 8 N -0.619 5.619 9 C 0.131 3.869 10 H 0.132 0.868 11 C -0.123 4.123 12 C -0.123 4.123 13 C 0.142 3.858 14 H 0.118 0.882 15 C 0.146 3.854 16 H 0.106 0.894 17 N -0.730 5.730 18 C 0.699 3.301 19 O -0.635 6.635 20 N -0.726 5.726 21 C 0.254 3.746 22 C -0.548 4.548 23 H 0.054 0.946 24 C 0.025 3.975 25 N -0.933 5.933 26 Si 0.942 3.058 27 H -0.264 1.264 28 H -0.273 1.273 29 H -0.258 1.258 30 C -0.140 4.140 31 H 0.055 0.945 32 H 0.089 0.911 33 H 0.060 0.940 34 H 0.073 0.927 35 H 0.101 0.899 36 H 0.065 0.935 37 H 0.060 0.940 38 H 0.089 0.911 39 H 0.064 0.936 40 H 0.104 0.896 41 H 0.081 0.919 42 H 0.103 0.897 43 H 0.082 0.918 44 H 0.399 0.601 45 H 0.401 0.599 46 H 0.013 0.987 47 H 0.011 0.989 48 H 0.273 0.727 49 H 0.056 0.944 50 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.297 6.405 -13.732 31.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.090 3.910 3 C -0.192 4.192 4 C -0.233 4.233 5 O -0.281 6.281 6 C 0.427 3.573 7 O -0.488 6.488 8 N -0.360 5.360 9 C 0.029 3.971 10 H 0.149 0.851 11 C -0.162 4.162 12 C -0.161 4.161 13 C 0.041 3.959 14 H 0.135 0.865 15 C 0.040 3.960 16 H 0.124 0.876 17 N -0.385 5.385 18 C 0.399 3.601 19 O -0.517 6.517 20 N -0.379 5.379 21 C 0.130 3.870 22 C -0.586 4.586 23 H 0.072 0.928 24 C -0.175 4.175 25 N -0.572 5.572 26 Si 0.765 3.235 27 H -0.189 1.189 28 H -0.198 1.198 29 H -0.182 1.182 30 C -0.179 4.179 31 H 0.074 0.926 32 H 0.108 0.892 33 H 0.079 0.921 34 H 0.092 0.908 35 H 0.119 0.881 36 H 0.084 0.916 37 H 0.079 0.921 38 H 0.107 0.893 39 H 0.083 0.917 40 H 0.123 0.877 41 H 0.100 0.900 42 H 0.121 0.879 43 H 0.101 0.899 44 H 0.234 0.766 45 H 0.235 0.765 46 H 0.030 0.970 47 H 0.029 0.971 48 H 0.082 0.918 49 H 0.075 0.925 50 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 27.280 5.978 -13.187 30.884 hybrid contribution -1.261 0.130 -0.142 1.276 sum 26.019 6.108 -13.329 29.866 Atomic orbital electron populations 1.22490 0.94582 1.03547 1.03299 1.22378 0.94115 0.92799 0.81718 1.21871 1.02555 0.90605 1.04130 1.22443 1.01675 1.02086 0.97139 1.86304 1.71535 1.22977 1.47313 1.17567 0.78220 0.80569 0.80987 1.90903 1.42735 1.71148 1.44010 1.49351 1.52783 1.13171 1.20732 1.23952 0.90343 1.00685 0.82135 0.85065 1.22986 0.96484 0.92985 1.03700 1.22925 0.91225 0.98641 1.03352 1.23973 0.99004 0.80212 0.92757 0.86452 1.22457 0.77797 0.99226 0.96505 0.87616 1.45058 1.08206 1.69193 1.16026 1.16145 0.81525 0.78776 0.83674 1.90821 1.73669 1.53421 1.33775 1.45196 1.05606 1.67731 1.19368 1.18938 0.88482 0.94964 0.84664 1.21283 0.91124 1.43925 1.02302 0.92807 1.25636 0.94473 0.94906 1.02494 1.69991 1.01658 1.48709 1.36810 0.85793 0.78684 0.79628 0.79400 1.18850 1.19768 1.18196 1.23456 0.98797 0.97157 0.98516 0.92596 0.89195 0.92073 0.90799 0.88076 0.91634 0.92083 0.89268 0.91651 0.87717 0.89995 0.87906 0.89893 0.76635 0.76505 0.96954 0.97111 0.91804 0.92518 0.87776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.70 8.37 71.98 0.60 -3.10 16 2 C 0.13 2.33 1.13 -10.80 -0.01 2.31 16 3 C -0.13 -1.62 8.85 71.98 0.64 -0.99 16 4 C -0.18 -3.05 8.37 71.98 0.60 -2.45 16 5 O -0.37 -8.23 9.76 -55.41 -0.54 -8.77 16 6 C 0.67 16.81 8.13 129.79 1.06 17.87 16 7 O -0.60 -17.89 12.48 19.81 0.25 -17.64 16 8 N -0.62 -12.57 2.90 -864.87 -2.51 -15.08 16 9 C 0.13 1.95 5.33 46.24 0.25 2.19 16 10 H 0.13 1.71 8.14 -2.39 -0.02 1.69 16 11 C -0.12 -1.21 6.44 32.21 0.21 -1.00 16 12 C -0.12 -1.45 6.44 32.19 0.21 -1.24 16 13 C 0.14 2.66 4.87 46.21 0.22 2.89 16 14 H 0.12 2.43 8.14 -2.39 -0.02 2.41 16 15 C 0.15 3.31 2.80 46.61 0.13 3.44 16 16 H 0.11 2.53 7.23 -2.39 -0.02 2.52 16 17 N -0.73 -21.46 5.08 -450.11 -2.29 -23.75 16 18 C 0.70 27.54 8.57 179.05 1.53 29.07 16 19 O -0.63 -29.03 15.99 -3.98 -0.06 -29.10 16 20 N -0.73 -31.02 5.55 -482.30 -2.68 -33.70 16 21 C 0.25 12.87 4.50 85.63 0.38 13.26 16 22 C -0.55 -31.24 9.83 25.60 0.25 -30.99 16 23 H 0.05 3.25 7.84 -2.91 -0.02 3.23 16 24 C 0.03 1.44 5.47 84.66 0.46 1.91 16 25 N -0.93 -56.77 13.96 21.45 0.30 -56.47 16 26 Si 0.94 44.63 27.47 68.60 1.88 46.52 16 27 H -0.26 -12.04 7.11 99.48 0.71 -11.33 16 28 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 29 H -0.26 -12.06 6.54 99.48 0.65 -11.41 16 30 C -0.14 -2.68 6.23 32.23 0.20 -2.48 16 31 H 0.05 1.17 8.14 -2.38 -0.02 1.15 16 32 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.06 1.61 5.88 -2.39 -0.01 1.59 16 34 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.10 0.80 8.14 -2.39 -0.02 0.79 16 36 H 0.06 0.83 8.14 -2.38 -0.02 0.81 16 37 H 0.06 1.42 5.88 -2.39 -0.01 1.41 16 38 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.10 0.68 7.82 -2.39 -0.02 0.66 16 41 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 42 H 0.10 0.96 7.81 -2.39 -0.02 0.95 16 43 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 44 H 0.40 11.14 8.67 -92.71 -0.80 10.34 16 45 H 0.40 15.64 8.34 -92.71 -0.77 14.87 16 46 H 0.01 0.66 7.20 -2.39 -0.02 0.65 16 47 H 0.01 0.57 7.57 -2.38 -0.02 0.55 16 48 H 0.27 15.41 8.31 -92.71 -0.77 14.63 16 49 H 0.06 1.37 7.98 -2.39 -0.02 1.35 16 50 H 0.10 1.69 7.82 -2.38 -0.02 1.67 16 Total: -1.00 -74.97 397.18 0.41 -74.55 By element: Atomic # 1 Polarization: 33.42 SS G_CDS: -0.67 Total: 32.74 kcal Atomic # 6 Polarization: 23.95 SS G_CDS: 6.74 Total: 30.69 kcal Atomic # 7 Polarization: -121.82 SS G_CDS: -7.18 Total: -128.99 kcal Atomic # 8 Polarization: -55.15 SS G_CDS: -0.36 Total: -55.51 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 1.88 Total: 46.52 kcal Total: -74.97 0.41 -74.55 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894486559.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.299 kcal (2) G-P(sol) polarization free energy of solvation -74.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds