Wall clock time and date at job start Tue Mar 31 2020 22:45:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52995 * 109.46858 * 2 1 4 4 C 1.53000 * 109.47304 * 120.00235 * 2 1 3 5 5 O 1.45199 * 109.46733 * 240.00473 * 2 1 3 6 6 C 1.34640 * 117.00515 * 59.99681 * 5 2 1 7 7 O 1.21508 * 119.99403 * 359.97438 * 6 5 2 8 8 N 1.34772 * 119.99862 * 179.97438 * 6 5 2 9 9 C 1.47143 * 136.02494 * 359.63249 * 8 6 5 10 10 C 1.53302 * 87.81542 * 153.28399 * 9 8 6 11 11 C 1.47148 * 136.01523 * 180.02562 * 8 6 5 12 12 C 1.53042 * 113.93467 * 273.08417 * 10 9 8 13 13 C 1.51735 * 108.10484 * 309.59532 * 12 10 9 14 14 O 1.21281 * 120.26349 * 111.36084 * 13 12 10 15 15 N 1.33793 * 119.46567 * 291.38704 * 13 12 10 16 16 C 1.47020 * 120.39510 * 0.18757 * 15 13 12 17 17 C 1.52977 * 108.91239 * 71.61597 * 16 15 13 18 18 N 1.45659 * 114.41786 * 139.77503 * 10 9 8 19 19 C 1.46889 * 111.00116 * 299.72256 * 18 10 9 20 20 C 1.50702 * 109.47294 * 176.78318 * 19 18 10 21 21 H 1.07999 * 119.99642 * 5.15416 * 20 19 18 22 22 C 1.37880 * 120.00290 * 185.15610 * 20 19 18 23 23 N 1.31518 * 119.99467 * 0.02562 * 22 20 19 24 24 Si 1.86789 * 119.99990 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47431 * 60.00213 * 24 22 20 26 26 H 1.48502 * 109.47190 * 179.97438 * 24 22 20 27 27 H 1.48498 * 109.47587 * 299.99894 * 24 22 20 28 28 H 1.08998 * 109.47173 * 60.00051 * 1 2 3 29 29 H 1.09004 * 109.46661 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46659 * 299.99621 * 1 2 3 31 31 H 1.09003 * 109.47596 * 60.00586 * 3 2 1 32 32 H 1.09003 * 109.47056 * 180.02562 * 3 2 1 33 33 H 1.09001 * 109.47648 * 300.00124 * 3 2 1 34 34 H 1.08996 * 109.46773 * 59.99758 * 4 2 1 35 35 H 1.08994 * 109.46825 * 179.97438 * 4 2 1 36 36 H 1.08995 * 109.46793 * 300.00167 * 4 2 1 37 37 H 1.09004 * 113.47489 * 267.99745 * 9 8 6 38 38 H 1.09006 * 113.47376 * 38.45926 * 9 8 6 39 39 H 1.08994 * 113.48509 * 321.49936 * 11 8 6 40 40 H 1.08999 * 113.48350 * 91.93746 * 11 8 6 41 41 H 1.09003 * 109.73638 * 69.24638 * 12 10 9 42 42 H 1.08998 * 109.73895 * 189.89862 * 12 10 9 43 43 H 0.97005 * 119.80232 * 180.16491 * 15 13 12 44 44 H 1.09000 * 109.56532 * 191.44803 * 16 15 13 45 45 H 1.09004 * 109.55966 * 311.67075 * 16 15 13 46 46 H 1.08997 * 109.24382 * 33.52774 * 17 16 15 47 47 H 1.09000 * 109.25001 * 152.97936 * 17 16 15 48 48 H 1.09001 * 109.47213 * 296.78776 * 19 18 10 49 49 H 1.09009 * 109.47077 * 56.78135 * 19 18 10 50 50 H 0.97003 * 119.99363 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 8 2.0140 -0.6844 -1.1856 6 6 1.6522 -0.1728 -2.3773 7 8 0.9508 0.8183 -2.4252 8 7 2.0680 -0.7599 -3.5169 9 6 2.8990 -1.9227 -3.8669 10 6 2.1130 -2.0153 -5.1799 11 6 1.8959 -0.5156 -4.9577 12 6 0.8277 -2.8397 -5.0773 13 6 1.1705 -4.1691 -4.4311 14 8 0.7681 -4.4289 -3.3169 15 7 1.9206 -5.0520 -5.1002 16 6 2.4137 -4.7380 -6.4492 17 6 3.5074 -3.6737 -6.3420 18 7 2.9246 -2.3357 -6.3462 19 6 3.9559 -1.3132 -6.5669 20 6 4.8234 -1.7177 -7.7309 21 1 4.5785 -2.5981 -8.3065 22 6 5.9295 -0.9637 -8.0612 23 7 6.2279 0.1081 -7.3599 24 14 7.0051 -1.4655 -9.5035 25 1 6.1932 -1.4747 -10.7469 26 1 8.1213 -0.4970 -9.6492 27 1 7.5556 -2.8233 -9.2618 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3632 0.5138 0.8900 31 1 1.6768 1.9563 0.8900 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9564 -0.8900 34 1 1.6768 -1.7489 1.2491 35 1 3.1301 -0.7216 1.2489 36 1 1.6768 -0.2075 2.1391 37 1 3.9517 -1.6775 -4.0074 38 1 2.7490 -2.7778 -3.2077 39 1 0.8946 -0.1773 -5.2244 40 1 2.6800 0.1064 -5.3895 41 1 0.0984 -2.3097 -4.4645 42 1 0.4182 -3.0085 -6.0732 43 1 2.1407 -5.9044 -4.6927 44 1 2.8241 -5.6383 -6.9066 45 1 1.5930 -4.3604 -7.0590 46 1 4.0627 -3.8212 -5.4158 47 1 4.1876 -3.7710 -7.1881 48 1 3.4792 -0.3573 -6.7838 49 1 4.5704 -1.2178 -5.6716 50 1 7.0059 0.6387 -7.5924 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931303682.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:45:51 Heat of formation + Delta-G solvation = -75.289038 kcal Electronic energy + Delta-G solvation = -32116.482899 eV Core-core repulsion = 27952.141430 eV Total energy + Delta-G solvation = -4164.341469 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.72803 -41.47680 -40.01760 -38.14999 -37.32696 -35.78258 -35.10701 -34.23466 -32.24174 -30.14904 -28.90314 -28.40831 -28.35690 -27.81038 -27.45833 -24.37760 -24.07409 -22.72193 -21.18240 -20.70500 -19.46711 -19.17894 -18.38658 -18.25142 -17.91426 -17.60584 -17.38937 -16.78920 -16.59682 -16.47541 -15.78617 -15.58132 -15.31982 -15.13074 -14.94349 -14.65240 -14.32302 -14.18430 -13.88188 -13.70685 -13.65723 -13.39641 -13.26152 -13.06872 -12.95911 -12.92484 -12.87052 -12.78601 -12.57178 -12.55737 -12.44503 -12.33313 -12.13713 -12.00548 -11.65587 -11.45624 -11.20448 -11.13229 -10.88868 -10.54510 -10.05243 -9.98091 -8.96329 -8.14676 -6.23178 0.84478 1.50086 1.51490 1.53906 1.58287 1.63509 2.36134 2.44800 2.62621 2.87085 3.18321 3.21611 3.49779 3.69963 3.71421 3.75499 3.82060 3.89493 4.06252 4.20962 4.25942 4.33521 4.40561 4.45274 4.46952 4.54071 4.57010 4.57161 4.66029 4.70695 4.76491 4.81930 4.82031 4.89355 5.05243 5.06749 5.16658 5.23809 5.28319 5.38582 5.40134 5.42172 5.69080 5.91298 6.04967 6.17982 6.27776 6.49992 6.64862 6.94106 7.12731 7.23287 7.46769 8.96122 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.011836 B = 0.003834 C = 0.003132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2365.141626 B = 7301.444581 C = 8937.121970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.118 3.882 3 C -0.178 4.178 4 C -0.134 4.134 5 O -0.372 6.372 6 C 0.678 3.322 7 O -0.588 6.588 8 N -0.630 5.630 9 C 0.078 3.922 10 C 0.111 3.889 11 C 0.131 3.869 12 C -0.099 4.099 13 C 0.521 3.479 14 O -0.593 6.593 15 N -0.711 5.711 16 C 0.113 3.887 17 C 0.043 3.957 18 N -0.524 5.524 19 C 0.205 3.795 20 C -0.524 4.524 21 H 0.085 0.915 22 C 0.006 3.994 23 N -0.934 5.934 24 Si 0.962 3.038 25 H -0.266 1.266 26 H -0.297 1.297 27 H -0.264 1.264 28 H 0.061 0.939 29 H 0.057 0.943 30 H 0.099 0.901 31 H 0.100 0.900 32 H 0.055 0.945 33 H 0.059 0.941 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.111 0.889 37 H 0.075 0.925 38 H 0.070 0.930 39 H 0.100 0.900 40 H 0.090 0.910 41 H 0.093 0.907 42 H 0.134 0.866 43 H 0.407 0.593 44 H 0.128 0.872 45 H 0.098 0.902 46 H 0.018 0.982 47 H 0.107 0.893 48 H 0.017 0.983 49 H -0.028 1.028 50 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.787 -7.503 8.107 14.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.082 3.918 3 C -0.235 4.235 4 C -0.191 4.191 5 O -0.287 6.287 6 C 0.435 3.565 7 O -0.479 6.479 8 N -0.372 5.372 9 C -0.048 4.048 10 C 0.019 3.981 11 C 0.010 3.990 12 C -0.140 4.140 13 C 0.308 3.692 14 O -0.475 6.475 15 N -0.362 5.362 16 C -0.011 4.011 17 C -0.085 4.085 18 N -0.247 5.247 19 C 0.080 3.920 20 C -0.562 4.562 21 H 0.103 0.897 22 C -0.192 4.192 23 N -0.574 5.574 24 Si 0.787 3.213 25 H -0.191 1.191 26 H -0.223 1.223 27 H -0.189 1.189 28 H 0.080 0.920 29 H 0.076 0.924 30 H 0.118 0.882 31 H 0.119 0.881 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.130 0.870 37 H 0.093 0.907 38 H 0.088 0.912 39 H 0.118 0.882 40 H 0.108 0.892 41 H 0.112 0.888 42 H 0.152 0.848 43 H 0.243 0.757 44 H 0.146 0.854 45 H 0.116 0.884 46 H 0.036 0.964 47 H 0.125 0.875 48 H 0.035 0.965 49 H -0.010 1.010 50 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -9.503 -6.911 8.484 14.493 hybrid contribution 1.743 0.248 0.283 1.783 sum -7.760 -6.663 8.767 13.471 Atomic orbital electron populations 1.22449 0.93513 1.02782 1.04559 1.22561 0.95120 0.92769 0.81372 1.22466 1.01330 0.95171 1.04535 1.21879 1.02179 1.01109 0.93887 1.86350 1.71528 1.57047 1.13802 1.17361 0.78681 0.80089 0.80360 1.90852 1.43042 1.27148 1.86883 1.48095 1.52765 1.32096 1.04266 1.23816 0.96302 0.87820 0.96822 1.21870 0.94107 0.94438 0.87717 1.23373 1.04102 0.96582 0.74927 1.21739 0.95631 0.91883 1.04710 1.20699 0.77237 0.86458 0.84814 1.90724 1.55946 1.79601 1.21210 1.46063 1.51507 1.19626 1.19050 1.22097 0.97472 0.99591 0.81898 1.22468 0.96901 0.87011 1.02074 1.60137 1.26439 1.04055 1.34107 1.19511 0.87659 0.90231 0.94638 1.21583 1.08978 1.11608 1.13997 0.89745 1.25822 0.99220 0.94903 0.99294 1.70091 1.28187 1.17485 1.41662 0.85543 0.77908 0.78032 0.79786 1.19123 1.22342 1.18903 0.92036 0.92425 0.88231 0.88110 0.92552 0.92239 0.91658 0.91661 0.87005 0.90731 0.91170 0.88158 0.89187 0.88822 0.84802 0.75657 0.85376 0.88373 0.96350 0.87531 0.96487 1.01048 0.93070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.44 8.37 71.98 0.60 -3.83 16 2 C 0.12 3.18 1.13 -10.79 -0.01 3.16 16 3 C -0.18 -4.59 8.37 71.98 0.60 -3.99 16 4 C -0.13 -2.63 8.85 71.98 0.64 -1.99 16 5 O -0.37 -13.21 9.91 -55.50 -0.55 -13.76 16 6 C 0.68 26.23 8.26 129.79 1.07 27.31 16 7 O -0.59 -23.91 12.66 19.82 0.25 -23.66 16 8 N -0.63 -23.49 3.52 -988.09 -3.48 -26.97 16 9 C 0.08 2.80 6.88 83.34 0.57 3.37 16 10 C 0.11 3.55 1.02 4.14 0.00 3.55 16 11 C 0.13 4.57 7.27 83.29 0.61 5.18 16 12 C -0.10 -2.69 5.00 30.19 0.15 -2.54 16 13 C 0.52 14.97 5.80 88.14 0.51 15.48 16 14 O -0.59 -21.76 17.80 -3.03 -0.05 -21.82 16 15 N -0.71 -15.48 5.29 -462.07 -2.45 -17.92 16 16 C 0.11 2.14 6.46 86.27 0.56 2.70 16 17 C 0.04 1.25 5.04 86.48 0.44 1.68 16 18 N -0.52 -17.74 4.41 -857.52 -3.78 -21.52 16 19 C 0.20 9.17 3.78 85.56 0.32 9.49 16 20 C -0.52 -25.00 8.19 25.60 0.21 -24.79 16 21 H 0.08 3.69 6.10 -2.91 -0.02 3.67 16 22 C 0.01 0.31 5.46 84.65 0.46 0.78 16 23 N -0.93 -52.31 13.29 21.45 0.28 -52.02 16 24 Si 0.96 39.92 29.54 68.60 2.03 41.95 16 25 H -0.27 -10.61 7.11 99.48 0.71 -9.91 16 26 H -0.30 -12.71 7.11 99.48 0.71 -12.00 16 27 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 28 H 0.06 1.90 5.88 -2.39 -0.01 1.89 16 29 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 31 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 32 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.06 1.90 5.88 -2.39 -0.01 1.89 16 34 H 0.06 1.31 8.14 -2.39 -0.02 1.30 16 35 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.07 2.99 6.34 -2.38 -0.02 2.98 16 38 H 0.07 2.57 6.74 -2.38 -0.02 2.56 16 39 H 0.10 3.13 8.10 -2.39 -0.02 3.11 16 40 H 0.09 3.58 5.52 -2.39 -0.01 3.56 16 41 H 0.09 2.70 7.87 -2.39 -0.02 2.68 16 42 H 0.13 2.90 7.14 -2.39 -0.02 2.88 16 43 H 0.41 7.55 8.92 -92.70 -0.83 6.73 16 44 H 0.13 1.55 8.14 -2.39 -0.02 1.53 16 45 H 0.10 1.74 6.99 -2.39 -0.02 1.73 16 46 H 0.02 0.58 7.55 -2.39 -0.02 0.56 16 47 H 0.11 3.32 5.36 -2.39 -0.01 3.31 16 48 H 0.02 0.84 6.29 -2.39 -0.02 0.83 16 49 H -0.03 -1.43 6.27 -2.38 -0.01 -1.44 16 50 H 0.26 14.09 8.31 -92.71 -0.77 13.32 16 Total: -1.00 -68.51 382.00 -0.87 -69.38 By element: Atomic # 1 Polarization: 30.64 SS G_CDS: 0.15 Total: 30.79 kcal Atomic # 6 Polarization: 28.83 SS G_CDS: 6.74 Total: 35.57 kcal Atomic # 7 Polarization: -109.02 SS G_CDS: -9.42 Total: -118.44 kcal Atomic # 8 Polarization: -58.89 SS G_CDS: -0.35 Total: -59.24 kcal Atomic # 14 Polarization: 39.92 SS G_CDS: 2.03 Total: 41.95 kcal Total: -68.51 -0.87 -69.38 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931303682.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.909 kcal (2) G-P(sol) polarization free energy of solvation -68.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds